RNA–Protein interactions for RNA: ENST00000536710.1

PRKDC-208, Transcript of protein kinase, DNA-activated, catalytic subunit, human

TSL 4

Gene PRKDC, Length 554 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PRKDC-208	ENST00000536710	SLA2	Q9H6Q3	261 aa		5.21	□□□□□ -1.58
PRKDC-208	ENST00000536710	PRMT7	Q9NVM4	692 aa	Predicted RBP	5.21	□□□□□ -1.58
PRKDC-208	ENST00000536710	NPAP1	Q9NZP6	1156 aa		5.21	□□□□□ -1.58
PRKDC-208	ENST00000536710	RASAL2	Q9UJF2	1139 aa		5.21	□□□□□ -1.58
PRKDC-208	ENST00000536710	GTF3C4	Q9UKN8	822 aa		5.21	□□□□□ -1.58
PRKDC-208	ENST00000536710	GRIP1	Q9Y3R0	1128 aa		5.21	□□□□□ -1.58
PRKDC-208	ENST00000536710	LILRA5	A6NI73	299 aa		5.2	□□□□□ -1.58
PRKDC-208	ENST00000536710	ANKRD66	B4E2M5	251 aa		5.2	□□□□□ -1.58
PRKDC-208	ENST00000536710	EIF3D	O15371	548 aa	Known RBP eCLIP	5.2	□□□□□ -1.58
PRKDC-208	ENST00000536710	ZNHIT1	O43257	154 aa		5.2	□□□□□ -1.58
PRKDC-208	ENST00000536710	MED24	O75448	989 aa		5.2	□□□□□ -1.58
PRKDC-208	ENST00000536710	TOMM70	O94826	608 aa		5.2	□□□□□ -1.58
PRKDC-208	ENST00000536710	CAMTA2	O94983	1202 aa		5.2	□□□□□ -1.58
PRKDC-208	ENST00000536710	IGKV2-30	P06310	120 aa		5.2	□□□□□ -1.58
PRKDC-208	ENST00000536710	FAM106CP	P0CH98	169 aa		5.2	□□□□□ -1.58
PRKDC-208	ENST00000536710	ITGA2	P17301	1181 aa		5.2	□□□□□ -1.58
PRKDC-208	ENST00000536710	USP8	P40818	1118 aa		5.2	□□□□□ -1.58
PRKDC-208	ENST00000536710	CDKN2A	P42771	156 aa	Known RBP	5.2	□□□□□ -1.58
PRKDC-208	ENST00000536710	TNNT3	P45378	269 aa	Predicted RBP	5.2	□□□□□ -1.58
PRKDC-208	ENST00000536710	BRWD1-AS2	P59051	145 aa		5.2	□□□□□ -1.58
PRKDC-208	ENST00000536710	TUBA1B	P68363	451 aa		5.2	□□□□□ -1.58
PRKDC-208	ENST00000536710	REL	Q04864	619 aa	Predicted RBP	5.2	□□□□□ -1.58
PRKDC-208	ENST00000536710	EGR4	Q05215	589 aa		5.2	□□□□□ -1.58
PRKDC-208	ENST00000536710	TROAP	Q12815	778 aa		5.2	□□□□□ -1.58
PRKDC-208	ENST00000536710	BFSP1	Q12934	665 aa		5.2	□□□□□ -1.58
PRKDC-208	ENST00000536710	GTF2H2	Q13888	395 aa		5.2	□□□□□ -1.58
PRKDC-208	ENST00000536710	KLHL26	Q53HC5	615 aa		5.2	□□□□□ -1.58
PRKDC-208	ENST00000536710	PLA2G4F	Q68DD2	849 aa		5.2	□□□□□ -1.58
PRKDC-208	ENST00000536710	AWAT2	Q6E213	333 aa		5.2	□□□□□ -1.58
PRKDC-208	ENST00000536710	GTF2H2C	Q6P1K8	395 aa		5.2	□□□□□ -1.58
PRKDC-208	ENST00000536710	PLEKHM3	Q6ZWE6	761 aa		5.2	□□□□□ -1.58
PRKDC-208	ENST00000536710	MEPCE	Q7L2J0	689 aa	Known RBP	5.2	□□□□□ -1.58
PRKDC-208	ENST00000536710	SFR1	Q86XK3	245 aa		5.2	□□□□□ -1.58
PRKDC-208	ENST00000536710	FAM114A1	Q8IWE2	563 aa		5.2	□□□□□ -1.58
PRKDC-208	ENST00000536710	CCAR2	Q8N163	923 aa	Known RBP	5.2	□□□□□ -1.58
PRKDC-208	ENST00000536710	KCNH5	Q8NCM2	988 aa		5.2	□□□□□ -1.58
PRKDC-208	ENST00000536710	PAPD5	Q8NDF8	572 aa	Known RBP	5.2	□□□□□ -1.58
PRKDC-208	ENST00000536710	BBS10	Q8TAM1	723 aa		5.2	□□□□□ -1.58
PRKDC-208	ENST00000536710	DEPDC1B	Q8WUY9	529 aa		5.2	□□□□□ -1.58
PRKDC-208	ENST00000536710	SMPDL3B	Q92485	455 aa		5.2	□□□□□ -1.58
PRKDC-208	ENST00000536710	FIG4	Q92562	907 aa		5.2	□□□□□ -1.58
PRKDC-208	ENST00000536710	ARSG	Q96EG1	525 aa		5.2	□□□□□ -1.58
PRKDC-208	ENST00000536710	PHF21B	Q96EK2	531 aa		5.2	□□□□□ -1.58
PRKDC-208	ENST00000536710	FAM84B	Q96KN1	310 aa	Predicted RBP	5.2	□□□□□ -1.58
PRKDC-208	ENST00000536710	FERMT1	Q9BQL6	677 aa		5.2	□□□□□ -1.58
PRKDC-208	ENST00000536710	SYT17	Q9BSW7	474 aa		5.2	□□□□□ -1.58
PRKDC-208	ENST00000536710	THUMPD3	Q9BV44	507 aa	Known RBP	5.2	□□□□□ -1.58
PRKDC-208	ENST00000536710	MBNL1	Q9NR56	388 aa	Known RBP	5.2	□□□□□ -1.58
PRKDC-208	ENST00000536710	TMEM30A	Q9NV96	361 aa		5.2	□□□□□ -1.58
PRKDC-208	ENST00000536710	OSER1	Q9NX31	292 aa		5.2	□□□□□ -1.58
PRKDC-208	ENST00000536710	POMT1	Q9Y6A1	747 aa		5.2	□□□□□ -1.58
PRKDC-208	ENST00000536710	TRAV34	A0A0B4J273	112 aa		5.19	□□□□□ -1.58
PRKDC-208	ENST00000536710	HNRNPCL2	B2RXH8	293 aa		5.19	□□□□□ -1.58
PRKDC-208	ENST00000536710	TRIM77	I1YAP6	450 aa		5.19	□□□□□ -1.58
PRKDC-208	ENST00000536710	WDR46	O15213	610 aa	Known RBP	5.19	□□□□□ -1.58
PRKDC-208	ENST00000536710	GPR137B	O60478	399 aa		5.19	□□□□□ -1.58
PRKDC-208	ENST00000536710	WDR1	O75083	606 aa		5.19	□□□□□ -1.58
PRKDC-208	ENST00000536710	ATP5B	P06576	529 aa	Known RBP	5.19	□□□□□ -1.58
PRKDC-208	ENST00000536710	OR2T7	P0C7T2	308 aa		5.19	□□□□□ -1.58
PRKDC-208	ENST00000536710	EEF1B2	P24534	225 aa	Known RBP	5.19	□□□□□ -1.58
PRKDC-208	ENST00000536710	AZGP1	P25311	298 aa	Known RBP	5.19	□□□□□ -1.58
PRKDC-208	ENST00000536710	COPB2	P35606	906 aa		5.19	□□□□□ -1.58
PRKDC-208	ENST00000536710	SLC9A3	P48764	834 aa		5.19	□□□□□ -1.58
PRKDC-208	ENST00000536710	CAPZA1	P52907	286 aa		5.19	□□□□□ -1.58
PRKDC-208	ENST00000536710	POLG	P54098	1239 aa	Predicted RBP	5.19	□□□□□ -1.58
PRKDC-208	ENST00000536710	TPD52	P55327	224 aa	Predicted RBP	5.19	□□□□□ -1.58
PRKDC-208	ENST00000536710	MZT1	Q08AG7	82 aa		5.19	□□□□□ -1.58
PRKDC-208	ENST00000536710	ACSM1	Q08AH1	577 aa		5.19	□□□□□ -1.58
PRKDC-208	ENST00000536710	SLC39A14	Q15043	492 aa		5.19	□□□□□ -1.58
PRKDC-208	ENST00000536710	KLC3	Q6P597	504 aa		5.19	□□□□□ -1.58
PRKDC-208	ENST00000536710	GFRAL	Q6UXV0	394 aa		5.19	□□□□□ -1.58
PRKDC-208	ENST00000536710	TMPRSS11F	Q6ZWK6	438 aa		5.19	□□□□□ -1.58
PRKDC-208	ENST00000536710	ZNF575	Q86XF7	245 aa		5.19	□□□□□ -1.58
PRKDC-208	ENST00000536710	TMEM219	Q86XT9	240 aa		5.19	□□□□□ -1.58
PRKDC-208	ENST00000536710	IQCF1	Q8N6M8	205 aa		5.19	□□□□□ -1.58
PRKDC-208	ENST00000536710	DAZL	Q92904	295 aa	Known RBP	5.19	□□□□□ -1.58
PRKDC-208	ENST00000536710	ZNF385A	Q96PM9	386 aa	Known RBP	5.19	□□□□□ -1.58
PRKDC-208	ENST00000536710	MGME1	Q9BQP7	344 aa		5.19	□□□□□ -1.58
PRKDC-208	ENST00000536710	NEURL2	Q9BR09	285 aa		5.19	□□□□□ -1.58
PRKDC-208	ENST00000536710	CSTL1	Q9H114	145 aa		5.19	□□□□□ -1.58
PRKDC-208	ENST00000536710	UBTD1	Q9HAC8	227 aa		5.19	□□□□□ -1.58
PRKDC-208	ENST00000536710	TRPC7	Q9HCX4	862 aa		5.19	□□□□□ -1.58
PRKDC-208	ENST00000536710	ZNF112	Q9UJU3	913 aa		5.19	□□□□□ -1.58
PRKDC-208	ENST00000536710	CPSF3	Q9UKF6	684 aa	Known RBP	5.19	□□□□□ -1.58
PRKDC-208	ENST00000536710	LIPG	Q9Y5X9	500 aa		5.19	□□□□□ -1.58
PRKDC-208	ENST00000536710		A0A1W2PPM1	405 aa		5.18	□□□□□ -1.58
PRKDC-208	ENST00000536710	ELOVL7	A1L3X0	281 aa		5.18	□□□□□ -1.58
PRKDC-208	ENST00000536710	SLU7	O95391	586 aa	Known RBP	5.18	□□□□□ -1.58
PRKDC-208	ENST00000536710	SP100	P23497	879 aa	Predicted RBP	5.18	□□□□□ -1.58
PRKDC-208	ENST00000536710	TLX1	P31314	330 aa	Predicted RBP	5.18	□□□□□ -1.58
PRKDC-208	ENST00000536710	IL15	P40933	162 aa	Predicted RBP	5.18	□□□□□ -1.58
PRKDC-208	ENST00000536710	PRKCI	P41743	596 aa		5.18	□□□□□ -1.58
PRKDC-208	ENST00000536710	PDLIM4	P50479	330 aa		5.18	□□□□□ -1.58
PRKDC-208	ENST00000536710	HNRNPK	P61978	463 aa	Known RBP eCLIP	5.18	□□□□□ -1.58
PRKDC-208	ENST00000536710	EEF1A1	P68104	462 aa	Known RBP	5.18	□□□□□ -1.58
PRKDC-208	ENST00000536710	PRKAA1	Q13131	559 aa		5.18	□□□□□ -1.58
PRKDC-208	ENST00000536710	RAB6C	Q53S08	254 aa		5.18	□□□□□ -1.58
PRKDC-208	ENST00000536710	EEF1A1P5	Q5VTE0	462 aa		5.18	□□□□□ -1.58
PRKDC-208	ENST00000536710	C9orf47	Q6ZRZ4	202 aa		5.18	□□□□□ -1.58
PRKDC-208	ENST00000536710	ASB18	Q6ZVZ8	466 aa		5.18	□□□□□ -1.58

Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms