RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 BRINP1O60477 761 aa14.71□□□□□ -0.05
CPSF1-208ENST00000532560 MPOP05164 745 aa14.71□□□□□ -0.05
CPSF1-208ENST00000532560 THRAP10827 490 aa14.71□□□□□ -0.05
CPSF1-208ENST00000532560 ARCN1P48444 511 aaKnown RBP14.71□□□□□ -0.05
CPSF1-208ENST00000532560 LIMK2P53671 638 aa14.71□□□□□ -0.05
CPSF1-208ENST00000532560 CFHR1Q03591 330 aa14.71□□□□□ -0.05
CPSF1-208ENST00000532560 CYP4F3Q08477 520 aa14.71□□□□□ -0.05
CPSF1-208ENST00000532560 TRA2AQ13595 282 aaKnown RBP eCLIP14.71□□□□□ -0.05
CPSF1-208ENST00000532560 GPR18Q14330 331 aa14.71□□□□□ -0.05
CPSF1-208ENST00000532560 TYSND1Q2T9J0 566 aa14.71□□□□□ -0.05
CPSF1-208ENST00000532560 ANKRD20A4Q4UJ75 823 aa14.71□□□□□ -0.05
CPSF1-208ENST00000532560 C3orf38Q5JPI3 329 aa14.71□□□□□ -0.05
CPSF1-208ENST00000532560 RNF187Q5TA31 235 aaPredicted RBP14.71□□□□□ -0.05
CPSF1-208ENST00000532560 CAPRIN2Q6IMN6 1127 aaKnown RBP14.71□□□□□ -0.05
CPSF1-208ENST00000532560 MRNIPQ6NTE8 343 aa14.71□□□□□ -0.05
CPSF1-208ENST00000532560 USP53Q70EK8 1073 aa14.71□□□□□ -0.05
CPSF1-208ENST00000532560 ZNF572Q7Z3I7 529 aaPredicted RBP14.71□□□□□ -0.05
CPSF1-208ENST00000532560 PROSER1Q86XN7 944 aa14.71□□□□□ -0.05
CPSF1-208ENST00000532560 CFAP206Q8IYR0 622 aa14.71□□□□□ -0.05
CPSF1-208ENST00000532560 LSMEM2Q8N112 164 aa14.71□□□□□ -0.05
CPSF1-208ENST00000532560 LILRA3Q8N6C8 439 aaPredicted RBP14.71□□□□□ -0.05
CPSF1-208ENST00000532560 TMEM159Q96B96 161 aa14.71□□□□□ -0.05
CPSF1-208ENST00000532560 ZNF669Q96BR6 464 aaPredicted RBP14.71□□□□□ -0.05
CPSF1-208ENST00000532560 SIGLEC10Q96LC7 697 aa14.71□□□□□ -0.05
CPSF1-208ENST00000532560 C12orf66Q96MD2 445 aa14.71□□□□□ -0.05
CPSF1-208ENST00000532560 TBC1D10AQ9BXI6 508 aa14.71□□□□□ -0.05
CPSF1-208ENST00000532560 ZMYND15Q9H091 742 aa14.71□□□□□ -0.05
CPSF1-208ENST00000532560 OR52A5Q9H2C5 316 aa14.71□□□□□ -0.05
CPSF1-208ENST00000532560 SEMA6CQ9H3T2 930 aa14.71□□□□□ -0.05
CPSF1-208ENST00000532560 PDP2Q9P2J9 529 aa14.71□□□□□ -0.05
CPSF1-208ENST00000532560 AK5Q9Y6K8 562 aa14.71□□□□□ -0.05
CPSF1-208ENST00000532560 RPS6KL1Q9Y6S9 549 aa14.71□□□□□ -0.05
CPSF1-208ENST00000532560 MAP1BP46821 2468 aaKnown RBP14.71□□□□□ -0.05
CPSF1-208ENST00000532560 MN1Q10571 1320 aaPredicted RBP14.7□□□□□ -0.06
CPSF1-208ENST00000532560 PRAMEF33A0A0G2JMD5 474 aa14.7□□□□□ -0.06
CPSF1-208ENST00000532560 IGHV5-10-1A0A0J9YXX1 117 aa14.7□□□□□ -0.06
CPSF1-208ENST00000532560 ZCWPW2A0A1B0GU75 182 aa14.7□□□□□ -0.06
CPSF1-208ENST00000532560 PRMT5O14744 637 aaPredicted RBP14.7□□□□□ -0.06
CPSF1-208ENST00000532560 PLD2O14939 933 aa14.7□□□□□ -0.06
CPSF1-208ENST00000532560 HGSO14964 777 aaPredicted RBP14.7□□□□□ -0.06
CPSF1-208ENST00000532560 URI1O94763 535 aaPredicted RBP14.7□□□□□ -0.06
CPSF1-208ENST00000532560 USP1O94782 785 aa14.7□□□□□ -0.06
CPSF1-208ENST00000532560 SEC31AO94979 1220 aaKnown RBP14.7□□□□□ -0.06
CPSF1-208ENST00000532560 POLBP06746 335 aa14.7□□□□□ -0.06
CPSF1-208ENST00000532560 HOXB3P14651 431 aaPredicted RBP14.7□□□□□ -0.06
CPSF1-208ENST00000532560 H2AFXP16104 143 aaPredicted RBP14.7□□□□□ -0.06
CPSF1-208ENST00000532560 OGNP20774 298 aaKnown RBP14.7□□□□□ -0.06
CPSF1-208ENST00000532560 RPS3P23396 243 aaKnown RBP eCLIP14.7□□□□□ -0.065e-7■□□□□ 11
CPSF1-208ENST00000532560 MLLT3P42568 568 aaPredicted RBP14.7□□□□□ -0.06
CPSF1-208ENST00000532560 PLOD1Q02809 727 aaPredicted RBP14.7□□□□□ -0.06
CPSF1-208ENST00000532560 ST3GAL2Q16842 350 aa14.7□□□□□ -0.06
CPSF1-208ENST00000532560 DNAJC21Q5F1R6 531 aaKnown RBP14.7□□□□□ -0.06
CPSF1-208ENST00000532560 PHF19Q5T6S3 580 aa14.7□□□□□ -0.06
CPSF1-208ENST00000532560 HIBCHQ6NVY1 386 aaPredicted RBP14.7□□□□□ -0.06
CPSF1-208ENST00000532560 TMEM71Q6P5X7 295 aa14.7□□□□□ -0.06
CPSF1-208ENST00000532560 ZNF449Q6P9G9 518 aa14.7□□□□□ -0.06
CPSF1-208ENST00000532560 ZNF574Q6ZN55 896 aaPredicted RBP14.7□□□□□ -0.06
CPSF1-208ENST00000532560 LDB1Q86U70 411 aaPredicted RBP14.7□□□□□ -0.06
CPSF1-208ENST00000532560 LRRC6Q86X45 466 aa14.7□□□□□ -0.06
CPSF1-208ENST00000532560 OTUD6BQ8N6M0 293 aa14.7□□□□□ -0.06
CPSF1-208ENST00000532560 SPDYE1Q8NFV5 336 aaPredicted RBP14.7□□□□□ -0.06
CPSF1-208ENST00000532560 ZFPM2Q8WW38 1151 aa14.7□□□□□ -0.06
CPSF1-208ENST00000532560 STAMBPL1Q96FJ0 436 aa14.7□□□□□ -0.06
CPSF1-208ENST00000532560 SNF8Q96H20 258 aa14.7□□□□□ -0.06
CPSF1-208ENST00000532560 CCDC74BQ96LY2 380 aa14.7□□□□□ -0.06
CPSF1-208ENST00000532560 FCRL3Q96P31 734 aaPredicted RBP14.7□□□□□ -0.06
CPSF1-208ENST00000532560 INSM2Q96T92 566 aaPredicted RBP14.7□□□□□ -0.06
CPSF1-208ENST00000532560 TRIM56Q9BRZ2 755 aaKnown RBP14.7□□□□□ -0.06
CPSF1-208ENST00000532560 TSSK1BQ9BXA7 367 aa14.7□□□□□ -0.06
CPSF1-208ENST00000532560 P2RY12Q9H244 342 aa14.7□□□□□ -0.06
CPSF1-208ENST00000532560 IMP3Q9NV31 184 aaKnown RBP14.7□□□□□ -0.06
CPSF1-208ENST00000532560 HEBP2Q9Y5Z4 205 aa14.7□□□□□ -0.06
CPSF1-208ENST00000532560 MAD1L1Q9Y6D9 718 aa14.7□□□□□ -0.06
CPSF1-208ENST00000532560 KIF26BQ2KJY2 2108 aa14.69□□□□□ -0.06
CPSF1-208ENST00000532560 NDC80O14777 642 aa14.69□□□□□ -0.06
CPSF1-208ENST00000532560 PFDN6O15212 129 aa14.69□□□□□ -0.06
CPSF1-208ENST00000532560 UBXN7O94888 489 aa14.69□□□□□ -0.06
CPSF1-208ENST00000532560 TUBBP07437 444 aa14.69□□□□□ -0.06
CPSF1-208ENST00000532560 PGAM1P18669 254 aa14.69□□□□□ -0.06
CPSF1-208ENST00000532560 NDUFS1P28331 727 aa14.69□□□□□ -0.06
CPSF1-208ENST00000532560 MAPK9P45984 424 aa14.69□□□□□ -0.06
CPSF1-208ENST00000532560 CAPZBP47756 277 aa14.69□□□□□ -0.06
CPSF1-208ENST00000532560 CD151P48509 253 aa14.69□□□□□ -0.06
CPSF1-208ENST00000532560 NEPROQ6NW34 567 aa14.69□□□□□ -0.06
CPSF1-208ENST00000532560 RAB11FIP2Q7L804 512 aa14.69□□□□□ -0.06
CPSF1-208ENST00000532560 SDCCAG8Q86SQ7 713 aaPredicted RBP14.69□□□□□ -0.06
CPSF1-208ENST00000532560 PDZD3Q86UT5 571 aa14.69□□□□□ -0.06
CPSF1-208ENST00000532560 ELMO1Q92556 727 aa14.69□□□□□ -0.06
CPSF1-208ENST00000532560 PRR11Q96HE9 360 aaPredicted RBP14.69□□□□□ -0.06
CPSF1-208ENST00000532560 TCF12Q99081 682 aa14.69□□□□□ -0.06
CPSF1-208ENST00000532560 CMKLR1Q99788 373 aa14.69□□□□□ -0.06
CPSF1-208ENST00000532560 CARD6Q9BX69 1037 aa14.69□□□□□ -0.06
CPSF1-208ENST00000532560 ASCL3Q9NQ33 180 aa14.69□□□□□ -0.06
CPSF1-208ENST00000532560 TMEM9Q9P0T7 183 aa14.69□□□□□ -0.06
CPSF1-208ENST00000532560 GNPTGQ9UJJ9 305 aa14.69□□□□□ -0.06
CPSF1-208ENST00000532560 ZMIZ1Q9ULJ6 1067 aa14.69□□□□□ -0.06
CPSF1-208ENST00000532560 LOXL2Q9Y4K0 774 aa14.69□□□□□ -0.06
CPSF1-208ENST00000532560 MRFAP1Q9Y605 127 aa14.69□□□□□ -0.06
CPSF1-208ENST00000532560 CFAP20Q9Y6A4 193 aaKnown RBP14.69□□□□□ -0.06
CPSF1-208ENST00000532560 FREM2Q5SZK8 3169 aa14.69□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms