RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 OSBPL8Q9BZF1 889 aa14.4□□□□□ -0.1
VPS28-215ENST00000531924 LHX9Q9NQ69 397 aa14.4□□□□□ -0.1
VPS28-215ENST00000531924 SOHLH2Q9NX45 425 aa14.4□□□□□ -0.1
VPS28-215ENST00000531924 FKBPLQ9UIM3 349 aa14.4□□□□□ -0.1
VPS28-215ENST00000531924 PCDHA3Q9Y5H8 950 aa14.4□□□□□ -0.1
VPS28-215ENST00000531924 HEBP2Q9Y5Z4 205 aa14.4□□□□□ -0.1
VPS28-215ENST00000531924 OR6C74A6NCV1 312 aa14.39□□□□□ -0.11
VPS28-215ENST00000531924 OR5K3A6NET4 321 aa14.39□□□□□ -0.11
VPS28-215ENST00000531924 C21orf140B9A014 251 aa14.39□□□□□ -0.11
VPS28-215ENST00000531924 CREG1O75629 220 aa14.39□□□□□ -0.11
VPS28-215ENST00000531924 ZNF189O75820 626 aaPredicted RBP14.39□□□□□ -0.11
VPS28-215ENST00000531924 TJP3O95049 919 aa14.39□□□□□ -0.11
VPS28-215ENST00000531924 NTRK1P04629 796 aa14.39□□□□□ -0.11
VPS28-215ENST00000531924 EBLN1P0CF75 366 aa14.39□□□□□ -0.11
VPS28-215ENST00000531924 RBP3P10745 1247 aa14.39□□□□□ -0.11
VPS28-215ENST00000531924 ITGALP20701 1170 aa14.39□□□□□ -0.11
VPS28-215ENST00000531924 PSMB4P28070 264 aa14.39□□□□□ -0.11
VPS28-215ENST00000531924 CTNNA1P35221 906 aaKnown RBP14.39□□□□□ -0.11
VPS28-215ENST00000531924 RWDD2BP57060 319 aa14.39□□□□□ -0.11
VPS28-215ENST00000531924 RPS15P62841 145 aaKnown RBP14.39□□□□□ -0.11
VPS28-215ENST00000531924 TMPRSS15P98073 1019 aa14.39□□□□□ -0.11
VPS28-215ENST00000531924 PWWP2BQ6NUJ5 590 aa14.39□□□□□ -0.11
VPS28-215ENST00000531924 DUS1LQ6P1R4 473 aaKnown RBP14.39□□□□□ -0.11
VPS28-215ENST00000531924 SARM1Q6SZW1 724 aa14.39□□□□□ -0.11
VPS28-215ENST00000531924 RANBP10Q6VN20 620 aa14.39□□□□□ -0.11
VPS28-215ENST00000531924 TMEM126BQ8IUX1 230 aa14.39□□□□□ -0.11
VPS28-215ENST00000531924 CT55Q8WUE5 264 aa14.39□□□□□ -0.11
VPS28-215ENST00000531924 HEXDCQ8WVB3 486 aa14.39□□□□□ -0.11
VPS28-215ENST00000531924 SEC14L1Q92503 715 aa14.39□□□□□ -0.11
VPS28-215ENST00000531924 SLC41A2Q96JW4 573 aa14.39□□□□□ -0.11
VPS28-215ENST00000531924 INSM2Q96T92 566 aaPredicted RBP14.39□□□□□ -0.11
VPS28-215ENST00000531924 COPS8Q99627 209 aa14.39□□□□□ -0.11
VPS28-215ENST00000531924 CCM2Q9BSQ5 444 aa14.39□□□□□ -0.11
VPS28-215ENST00000531924 EPN3Q9H201 632 aa14.39□□□□□ -0.11
VPS28-215ENST00000531924 FANCEQ9HB96 536 aa14.39□□□□□ -0.11
VPS28-215ENST00000531924 FGF21Q9NSA1 209 aa14.39□□□□□ -0.11
VPS28-215ENST00000531924 MAN2B2Q9Y2E5 1009 aa14.39□□□□□ -0.11
VPS28-215ENST00000531924 EFR3BQ9Y2G0 817 aa14.39□□□□□ -0.11
VPS28-215ENST00000531924 KCNMB2Q9Y691 235 aa14.39□□□□□ -0.11
VPS28-215ENST00000531924 EPN1Q9Y6I3 576 aaPredicted RBP14.39□□□□□ -0.11
VPS28-215ENST00000531924 CCDC66A2RUB6 948 aa14.38□□□□□ -0.11
VPS28-215ENST00000531924 GOLGA6L9A6NEM1 432 aa14.38□□□□□ -0.11
VPS28-215ENST00000531924 GOLGA6L3A6NEY3 463 aa14.38□□□□□ -0.11
VPS28-215ENST00000531924 GAPDHSO14556 408 aaPredicted RBP14.38□□□□□ -0.11
VPS28-215ENST00000531924 RFPL1O75677 317 aa14.38□□□□□ -0.11
VPS28-215ENST00000531924 ZBTB11O95625 1053 aaPredicted RBP14.38□□□□□ -0.11
VPS28-215ENST00000531924 NDUFS1P28331 727 aa14.38□□□□□ -0.11
VPS28-215ENST00000531924 CA5AP35218 305 aa14.38□□□□□ -0.11
VPS28-215ENST00000531924 HADHAP40939 763 aa14.38□□□□□ -0.11
VPS28-215ENST00000531924 BCL7AQ4VC05 210 aa14.38□□□□□ -0.11
VPS28-215ENST00000531924 TEX19Q8NA77 164 aa14.38□□□□□ -0.11
VPS28-215ENST00000531924 SPATA13Q96N96 652 aa14.38□□□□□ -0.11
VPS28-215ENST00000531924 ALS2CR12Q96Q35 445 aa14.38□□□□□ -0.11
VPS28-215ENST00000531924 FAM118BQ9BPY3 351 aa14.38□□□□□ -0.11
VPS28-215ENST00000531924 TBL1YQ9BQ87 522 aa14.38□□□□□ -0.11
VPS28-215ENST00000531924 GPR87Q9BY21 358 aa14.38□□□□□ -0.11
VPS28-215ENST00000531924 FAM96AQ9H5X1 160 aa14.38□□□□□ -0.11
VPS28-215ENST00000531924 VPS37BQ9H9H4 285 aa14.38□□□□□ -0.11
VPS28-215ENST00000531924 SEMA5BQ9P283 1151 aa14.38□□□□□ -0.11
VPS28-215ENST00000531924 FEZ2Q9UHY8 353 aaPredicted RBP14.38□□□□□ -0.11
VPS28-215ENST00000531924 SLC24A2Q9UI40 661 aa14.38□□□□□ -0.11
VPS28-215ENST00000531924 PCDHGA6Q9Y5G7 932 aa14.38□□□□□ -0.11
VPS28-215ENST00000531924 IFRD1O00458 451 aaPredicted RBP14.37□□□□□ -0.11
VPS28-215ENST00000531924 PJA2O43164 708 aa14.37□□□□□ -0.11
VPS28-215ENST00000531924 CPNE3O75131 537 aaKnown RBP14.37□□□□□ -0.11
VPS28-215ENST00000531924 SCRG1O75711 98 aa14.37□□□□□ -0.11
VPS28-215ENST00000531924 TIAF1O95411 115 aa14.37□□□□□ -0.11
VPS28-215ENST00000531924 RECKO95980 971 aa14.37□□□□□ -0.11
VPS28-215ENST00000531924 KLK3P07288 261 aaPredicted RBP14.37□□□□□ -0.11
VPS28-215ENST00000531924 ARCN1P48444 511 aaKnown RBP14.37□□□□□ -0.11
VPS28-215ENST00000531924 TUBB4BP68371 445 aa14.37□□□□□ -0.11
VPS28-215ENST00000531924 KLRB1Q12918 225 aa14.37□□□□□ -0.11
VPS28-215ENST00000531924 TUBB2AQ13885 445 aa14.37□□□□□ -0.11
VPS28-215ENST00000531924 ARHGEF18Q6ZSZ5 1173 aa14.37□□□□□ -0.11
VPS28-215ENST00000531924 TAS2R42Q7RTR8 314 aa14.37□□□□□ -0.11
VPS28-215ENST00000531924 TMTC1Q8IUR5 882 aa14.37□□□□□ -0.11
VPS28-215ENST00000531924 CARFQ8N187 725 aa14.37□□□□□ -0.11
VPS28-215ENST00000531924 NXPE1Q8N323 547 aa14.37□□□□□ -0.11
VPS28-215ENST00000531924 SPDYE1Q8NFV5 336 aaPredicted RBP14.37□□□□□ -0.11
VPS28-215ENST00000531924 OR4E2Q8NGC2 313 aa14.37□□□□□ -0.11
VPS28-215ENST00000531924 OR8K5Q8NH50 307 aa14.37□□□□□ -0.11
VPS28-215ENST00000531924 CCDC110Q8TBZ0 833 aa14.37□□□□□ -0.11
VPS28-215ENST00000531924 HM13Q8TCT9 377 aa14.37□□□□□ -0.11
VPS28-215ENST00000531924 NAT14Q8WUY8 206 aa14.37□□□□□ -0.11
VPS28-215ENST00000531924 LCN9Q8WX39 176 aa14.37□□□□□ -0.11
VPS28-215ENST00000531924 MR1Q95460 341 aa14.37□□□□□ -0.11
VPS28-215ENST00000531924 PANX2Q96RD6 677 aa14.37□□□□□ -0.11
VPS28-215ENST00000531924 FERD3LQ96RJ6 166 aa14.37□□□□□ -0.11
VPS28-215ENST00000531924 TUBB2BQ9BVA1 445 aa14.37□□□□□ -0.11
VPS28-215ENST00000531924 SRMSQ9H3Y6 488 aa14.37□□□□□ -0.11
VPS28-215ENST00000531924 ACTL8Q9H568 366 aa14.37□□□□□ -0.11
VPS28-215ENST00000531924 KIR3DX1Q9H7L2 352 aa14.37□□□□□ -0.11
VPS28-215ENST00000531924 KCND1Q9NSA2 647 aa14.37□□□□□ -0.11
VPS28-215ENST00000531924 TP53TG5Q9Y2B4 290 aa14.37□□□□□ -0.11
VPS28-215ENST00000531924 UBR5O95071 2799 aaPredicted RBP14.36□□□□□ -0.11
VPS28-215ENST00000531924 GSAPA4D1B5 854 aa14.36□□□□□ -0.11
VPS28-215ENST00000531924 MATN2O00339 956 aa14.36□□□□□ -0.11
VPS28-215ENST00000531924 ATP1B2P14415 290 aaPredicted RBP14.36□□□□□ -0.11
VPS28-215ENST00000531924 POLR2CP19387 275 aaPredicted RBP14.36□□□□□ -0.11
VPS28-215ENST00000531924 CDH3P22223 829 aa14.36□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms