RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 OR52B6Q8NGF0 335 aa20.34■□□□□ 0.85
VPS28-209ENST00000528142 UBTD2Q8WUN7 234 aa20.34■□□□□ 0.85
VPS28-209ENST00000528142 SUSD6Q92537 303 aa20.34■□□□□ 0.85
VPS28-209ENST00000528142 GLYATL1Q969I3 302 aa20.34■□□□□ 0.85
VPS28-209ENST00000528142 TMEM79Q9BSE2 394 aa20.34■□□□□ 0.85
VPS28-209ENST00000528142 NOL11Q9H8H0 719 aaKnown RBP20.34■□□□□ 0.85
VPS28-209ENST00000528142 SLC7A8Q9UHI5 535 aa20.34■□□□□ 0.85
VPS28-209ENST00000528142 ARNTLO00327 626 aa20.33■□□□□ 0.85
VPS28-209ENST00000528142 PLK4O00444 970 aa20.33■□□□□ 0.85
VPS28-209ENST00000528142 OR7A17O14581 309 aa20.33■□□□□ 0.85
VPS28-209ENST00000528142 MPC1LP0DKB6 136 aa20.33■□□□□ 0.85
VPS28-209ENST00000528142 EZRP15311 586 aaKnown RBP20.33■□□□□ 0.85
VPS28-209ENST00000528142 GDI1P31150 447 aa20.33■□□□□ 0.85
VPS28-209ENST00000528142 HSPA14Q0VDF9 509 aa20.33■□□□□ 0.85
VPS28-209ENST00000528142 LDLRAP1Q5SW96 308 aa20.33■□□□□ 0.85
VPS28-209ENST00000528142 ZNF648Q5T619 568 aaPredicted RBP20.33■□□□□ 0.85
VPS28-209ENST00000528142 EGFLAMQ63HQ2 1017 aa20.33■□□□□ 0.85
VPS28-209ENST00000528142 PGM2L1Q6PCE3 622 aa20.33■□□□□ 0.85
VPS28-209ENST00000528142 EFL1Q7Z2Z2 1120 aaKnown RBP20.33■□□□□ 0.85
VPS28-209ENST00000528142 VRK3Q8IV63 474 aa20.33■□□□□ 0.85
VPS28-209ENST00000528142 DDIASQ8IXT1 998 aa20.33■□□□□ 0.85
VPS28-209ENST00000528142 PPP1R16AQ96I34 528 aa20.33■□□□□ 0.85
VPS28-209ENST00000528142 BTRCQ9Y297 605 aa20.33■□□□□ 0.85
VPS28-209ENST00000528142 DOCK8Q8NF50 2099 aa20.33■□□□□ 0.84
VPS28-209ENST00000528142 KPNA5O15131 536 aa20.32■□□□□ 0.84
VPS28-209ENST00000528142 CRCPO75575 148 aa20.32■□□□□ 0.84
VPS28-209ENST00000528142 OR4F21O95013 312 aa20.32■□□□□ 0.84
VPS28-209ENST00000528142 ALDOCP09972 364 aaKnown RBP20.32■□□□□ 0.84
VPS28-209ENST00000528142 LINC00032P0C843 101 aa20.32■□□□□ 0.84
VPS28-209ENST00000528142 HSPA7P48741 367 aa20.32■□□□□ 0.84
VPS28-209ENST00000528142 CREB5Q02930 508 aa20.32■□□□□ 0.84
VPS28-209ENST00000528142 GTF2H2Q13888 395 aa20.32■□□□□ 0.84
VPS28-209ENST00000528142 CDKL4Q5MAI5 379 aa20.32■□□□□ 0.84
VPS28-209ENST00000528142 GTF2H2CQ6P1K8 395 aa20.32■□□□□ 0.84
VPS28-209ENST00000528142 METTL2BQ6P1Q9 378 aaKnown RBP20.32■□□□□ 0.84
VPS28-209ENST00000528142 DEFB107AQ8IZN7 70 aa20.32■□□□□ 0.84
VPS28-209ENST00000528142 CD244Q9BZW8 370 aa20.32■□□□□ 0.84
VPS28-209ENST00000528142 ZDHHC4Q9NPG8 344 aa20.32■□□□□ 0.84
VPS28-209ENST00000528142 POLG2Q9UHN1 485 aa20.32■□□□□ 0.84
VPS28-209ENST00000528142 PSMD12O00232 456 aaPredicted RBP20.32■□□□□ 0.84
VPS28-209ENST00000528142 AIM2O14862 343 aa20.32■□□□□ 0.84
VPS28-209ENST00000528142 VPS4BO75351 444 aa20.32■□□□□ 0.84
VPS28-209ENST00000528142 SOD1P00441 154 aa20.32■□□□□ 0.84
VPS28-209ENST00000528142 EPHX1P07099 455 aa20.32■□□□□ 0.84
VPS28-209ENST00000528142 GRB7Q14451 532 aa20.32■□□□□ 0.84
VPS28-209ENST00000528142 ITPRIPL2Q3MIP1 535 aa20.32■□□□□ 0.84
VPS28-209ENST00000528142 TMEM52BQ4KMG9 183 aa20.32■□□□□ 0.84
VPS28-209ENST00000528142 XKR7Q5GH72 579 aa20.32■□□□□ 0.84
VPS28-209ENST00000528142 LETMD1Q6P1Q0 360 aa20.32■□□□□ 0.84
VPS28-209ENST00000528142 ERN2Q76MJ5 926 aaKnown RBP20.32■□□□□ 0.84
VPS28-209ENST00000528142 NET1Q7Z628 596 aaPredicted RBP20.32■□□□□ 0.84
VPS28-209ENST00000528142 MMAAQ8IVH4 418 aaKnown RBP20.32■□□□□ 0.84
VPS28-209ENST00000528142 RASGEF1AQ8N9B8 481 aa20.32■□□□□ 0.84
VPS28-209ENST00000528142 ASB11Q8WXH4 323 aa20.32■□□□□ 0.84
VPS28-209ENST00000528142 EGFL8Q99944 293 aa20.32■□□□□ 0.84
VPS28-209ENST00000528142 TRMT61BQ9BVS5 477 aaKnown RBP20.32■□□□□ 0.84
VPS28-209ENST00000528142 SLC12A9Q9BXP2 914 aa20.32■□□□□ 0.84
VPS28-209ENST00000528142 RNPEPL1Q9HAU8 725 aa20.32■□□□□ 0.84
VPS28-209ENST00000528142 CD248Q9HCU0 757 aa20.32■□□□□ 0.84
VPS28-209ENST00000528142 CACNA2D2Q9NY47 1150 aa20.32■□□□□ 0.84
VPS28-209ENST00000528142 LMCD1Q9NZU5 365 aa20.32■□□□□ 0.84
VPS28-209ENST00000528142 CNOT6Q9ULM6 557 aaKnown RBP20.32■□□□□ 0.84
VPS28-209ENST00000528142 PDE10AQ9Y233 779 aa20.32■□□□□ 0.84
VPS28-209ENST00000528142 COQ6Q9Y2Z9 468 aa20.32■□□□□ 0.84
VPS28-209ENST00000528142 SPTBN5Q9NRC6 3674 aaKnown RBP20.31■□□□□ 0.84
VPS28-209ENST00000528142 GIPC1O14908 333 aa20.31■□□□□ 0.84
VPS28-209ENST00000528142 CHUKO15111 745 aa20.31■□□□□ 0.84
VPS28-209ENST00000528142 RECQL5O94762 991 aaPredicted RBP20.31■□□□□ 0.84
VPS28-209ENST00000528142 FTH1P02794 183 aa20.31■□□□□ 0.84
VPS28-209ENST00000528142 C8GP07360 202 aa20.31■□□□□ 0.84
VPS28-209ENST00000528142 PRR35P0CG20 571 aa20.31■□□□□ 0.84
VPS28-209ENST00000528142 ENPP2Q13822 863 aa20.31■□□□□ 0.84
VPS28-209ENST00000528142 ZNF765Q7L2R6 523 aa20.31■□□□□ 0.84
VPS28-209ENST00000528142 DSG4Q86SJ6 1040 aa20.31■□□□□ 0.84
VPS28-209ENST00000528142 RASGRP3Q8IV61 690 aa20.31■□□□□ 0.84
VPS28-209ENST00000528142 BEND7Q8N7W2 519 aaPredicted RBP20.31■□□□□ 0.84
VPS28-209ENST00000528142 KYQ8NBH2 561 aa20.31■□□□□ 0.84
VPS28-209ENST00000528142 RCN3Q96D15 328 aa20.31■□□□□ 0.84
VPS28-209ENST00000528142 LRCH3Q96II8 777 aa20.31■□□□□ 0.84
VPS28-209ENST00000528142 CDK15Q96Q40 435 aa20.31■□□□□ 0.84
VPS28-209ENST00000528142 GIMAP2Q9UG22 337 aa20.31■□□□□ 0.84
VPS28-209ENST00000528142 OR2AG2A6NM03 316 aa20.3■□□□□ 0.84
VPS28-209ENST00000528142 QSOX1O00391 747 aa20.3■□□□□ 0.84
VPS28-209ENST00000528142 ENO2P09104 434 aaPredicted RBP20.3■□□□□ 0.84
VPS28-209ENST00000528142 LBPP18428 481 aa20.3■□□□□ 0.84
VPS28-209ENST00000528142 RPIAP49247 311 aa20.3■□□□□ 0.84
VPS28-209ENST00000528142 NUDT2P50583 147 aa20.3■□□□□ 0.84
VPS28-209ENST00000528142 CTSCP53634 463 aa20.3■□□□□ 0.84
VPS28-209ENST00000528142 CDKL1Q00532 357 aa20.3■□□□□ 0.84
VPS28-209ENST00000528142 TRAF3Q13114 568 aa20.3■□□□□ 0.84
VPS28-209ENST00000528142 BOP1Q14137 746 aaKnown RBP20.3■□□□□ 0.84
VPS28-209ENST00000528142 FASTKQ14296 549 aaKnown RBP20.3■□□□□ 0.84
VPS28-209ENST00000528142 COL19A1Q14993 1142 aa20.3■□□□□ 0.84
VPS28-209ENST00000528142 PREPLQ4J6C6 727 aaPredicted RBP20.3■□□□□ 0.84
VPS28-209ENST00000528142 GK5Q6ZS86 529 aa20.3■□□□□ 0.84
VPS28-209ENST00000528142 NEK10Q6ZWH5 1172 aa20.3■□□□□ 0.84
VPS28-209ENST00000528142 ENDOVQ8N8Q3 282 aaKnown RBP20.3■□□□□ 0.84
VPS28-209ENST00000528142 CDYL2Q8N8U2 506 aa20.3■□□□□ 0.84
VPS28-209ENST00000528142 DCBLD1Q8N8Z6 715 aa20.3■□□□□ 0.84
VPS28-209ENST00000528142 ELMO1Q92556 727 aa20.3■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms