RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 COG4Q9H9E3 785 aa10.41□□□□□ -0.74
CD44-227ENST00000528086 TREX1Q9NSU2 369 aa10.41□□□□□ -0.74
CD44-227ENST00000528086 SLC39A1Q9NY26 324 aa10.41□□□□□ -0.74
CD44-227ENST00000528086 EPHA6Q9UF33 1036 aa10.41□□□□□ -0.74
CD44-227ENST00000528086 CRLS1Q9UJA2 301 aa10.41□□□□□ -0.74
CD44-227ENST00000528086 RIMKLBQ9ULI2 386 aa10.41□□□□□ -0.74
CD44-227ENST00000528086 TCAF1Q9Y4C2 921 aa10.41□□□□□ -0.74
CD44-227ENST00000528086 BHMG1C9JSJ3 638 aaPredicted RBP10.4□□□□□ -0.74
CD44-227ENST00000528086 ZNF185O15231 689 aa10.4□□□□□ -0.74
CD44-227ENST00000528086 ZNF189O75820 626 aaPredicted RBP10.4□□□□□ -0.74
CD44-227ENST00000528086 TIAF1O95411 115 aa10.4□□□□□ -0.74
CD44-227ENST00000528086 GOT2P00505 430 aaKnown RBP10.4□□□□□ -0.74
CD44-227ENST00000528086 PTMAP06454 111 aaKnown RBP10.4□□□□□ -0.74
CD44-227ENST00000528086 ACADLP28330 430 aa10.4□□□□□ -0.74
CD44-227ENST00000528086 NMBRP28336 390 aa10.4□□□□□ -0.74
CD44-227ENST00000528086 CSTF2P33240 577 aaKnown RBP eCLIP10.4□□□□□ -0.74
CD44-227ENST00000528086 MAGEA6P43360 314 aa10.4□□□□□ -0.74
CD44-227ENST00000528086 PREPP48147 710 aa10.4□□□□□ -0.74
CD44-227ENST00000528086 PDE1BQ01064 536 aa10.4□□□□□ -0.74
CD44-227ENST00000528086 CACNG1Q06432 222 aa10.4□□□□□ -0.74
CD44-227ENST00000528086 VAC14Q08AM6 782 aa10.4□□□□□ -0.74
CD44-227ENST00000528086 BIRC2Q13490 618 aa10.4□□□□□ -0.74
CD44-227ENST00000528086 KCNJ11Q14654 390 aa10.4□□□□□ -0.74
CD44-227ENST00000528086 TRIP13Q15645 432 aaPredicted RBP10.4□□□□□ -0.74
CD44-227ENST00000528086 CYP1B1Q16678 543 aa10.4□□□□□ -0.74
CD44-227ENST00000528086 PACS1Q6VY07 963 aa10.4□□□□□ -0.74
CD44-227ENST00000528086 FAM92BQ6ZTR7 304 aa10.4□□□□□ -0.74
CD44-227ENST00000528086 LINC00523Q86TU6 105 aa10.4□□□□□ -0.74
CD44-227ENST00000528086 CAND1Q86VP6 1230 aaKnown RBP10.4□□□□□ -0.74
CD44-227ENST00000528086 SLC35F6Q8N357 371 aa10.4□□□□□ -0.74
CD44-227ENST00000528086 MPP5Q8N3R9 675 aa10.4□□□□□ -0.74
CD44-227ENST00000528086 PHC3Q8NDX5 983 aa10.4□□□□□ -0.74
CD44-227ENST00000528086 HM13Q8TCT9 377 aa10.4□□□□□ -0.74
CD44-227ENST00000528086 ULK4Q96C45 1275 aa10.4□□□□□ -0.74
CD44-227ENST00000528086 CXorf40BQ96DE9 158 aa10.4□□□□□ -0.74
CD44-227ENST00000528086 AHCYL2Q96HN2 611 aaKnown RBP10.4□□□□□ -0.74
CD44-227ENST00000528086 ZNF514Q96K75 400 aaPredicted RBP10.4□□□□□ -0.74
CD44-227ENST00000528086 C12orf66Q96MD2 445 aa10.4□□□□□ -0.74
CD44-227ENST00000528086 TTC25Q96NG3 672 aa10.4□□□□□ -0.74
CD44-227ENST00000528086 TGM7Q96PF1 710 aa10.4□□□□□ -0.74
CD44-227ENST00000528086 ALS2CR12Q96Q35 445 aa10.4□□□□□ -0.74
CD44-227ENST00000528086 CCNL2Q96S94 520 aaPredicted RBP10.4□□□□□ -0.74
CD44-227ENST00000528086 DDA1Q9BW61 102 aa10.4□□□□□ -0.74
CD44-227ENST00000528086 ZCCHC2Q9C0B9 1178 aaKnown RBP10.4□□□□□ -0.74
CD44-227ENST00000528086 RAB33BQ9H082 229 aa10.4□□□□□ -0.74
CD44-227ENST00000528086 ZNF768Q9H5H4 540 aaKnown RBP10.4□□□□□ -0.74
CD44-227ENST00000528086 EIF2B3Q9NR50 452 aaKnown RBP10.4□□□□□ -0.74
CD44-227ENST00000528086 FBXO8Q9NRD0 319 aa10.4□□□□□ -0.74
CD44-227ENST00000528086 CHRAC1Q9NRG0 131 aa10.4□□□□□ -0.74
CD44-227ENST00000528086 IMP3Q9NV31 184 aaKnown RBP10.4□□□□□ -0.74
CD44-227ENST00000528086 PAK5Q9P286 719 aa10.4□□□□□ -0.74
CD44-227ENST00000528086 SLC24A2Q9UI40 661 aa10.4□□□□□ -0.74
CD44-227ENST00000528086 PILRAQ9UKJ1 303 aa10.4□□□□□ -0.74
CD44-227ENST00000528086 TTC7AQ9ULT0 858 aaPredicted RBP10.4□□□□□ -0.74
CD44-227ENST00000528086 CDYLQ9Y232 598 aa10.4□□□□□ -0.74
CD44-227ENST00000528086 ZKSCAN5Q9Y2L8 839 aa10.4□□□□□ -0.74
CD44-227ENST00000528086 C17orf113A0A1B0GUU1 675 aa10.39□□□□□ -0.75
CD44-227ENST00000528086 SLC5A10A0PJK1 596 aa10.39□□□□□ -0.75
CD44-227ENST00000528086 ATXN7O15265 892 aaPredicted RBP10.39□□□□□ -0.75
CD44-227ENST00000528086 AVILO75366 819 aa10.39□□□□□ -0.75
CD44-227ENST00000528086 TMEM63AO94886 807 aa10.39□□□□□ -0.75
CD44-227ENST00000528086 DLGAP3O95886 979 aa10.39□□□□□ -0.75
CD44-227ENST00000528086 AMD1P17707 334 aa10.39□□□□□ -0.75
CD44-227ENST00000528086 F8A1P23610 371 aa10.39□□□□□ -0.75
CD44-227ENST00000528086 ADRA1DP25100 572 aa10.39□□□□□ -0.75
CD44-227ENST00000528086 ARCN1P48444 511 aaKnown RBP10.39□□□□□ -0.75
CD44-227ENST00000528086 SEPHS1P49903 392 aa10.39□□□□□ -0.75
CD44-227ENST00000528086 TMPRSS3P57727 454 aa10.39□□□□□ -0.75
CD44-227ENST00000528086 CYP4F2P78329 520 aa10.39□□□□□ -0.75
CD44-227ENST00000528086 KCNAB1Q14722 419 aa10.39□□□□□ -0.75
CD44-227ENST00000528086 LINC00303Q3SY05 128 aa10.39□□□□□ -0.75
CD44-227ENST00000528086 CES3Q6UWW8 571 aa10.39□□□□□ -0.75
CD44-227ENST00000528086 TAS2R42Q7RTR8 314 aa10.39□□□□□ -0.75
CD44-227ENST00000528086 PRSS42Q7Z5A4 293 aa10.39□□□□□ -0.75
CD44-227ENST00000528086 FAM129CQ86XR2 697 aa10.39□□□□□ -0.75
CD44-227ENST00000528086 PLXDC1Q8IUK5 500 aa10.39□□□□□ -0.75
CD44-227ENST00000528086 VRK3Q8IV63 474 aa10.39□□□□□ -0.75
CD44-227ENST00000528086 TRIM48Q8IWZ4 208 aa10.39□□□□□ -0.75
CD44-227ENST00000528086 EXD3Q8N9H8 876 aa10.39□□□□□ -0.75
CD44-227ENST00000528086 AVL9Q8NBF6 648 aa10.39□□□□□ -0.75
CD44-227ENST00000528086 FLVCR1-AS1Q8TAF5 88 aa10.39□□□□□ -0.75
CD44-227ENST00000528086 SGSM3Q96HU1 749 aa10.39□□□□□ -0.75
CD44-227ENST00000528086 SLC41A2Q96JW4 573 aa10.39□□□□□ -0.75
CD44-227ENST00000528086 MAP3K3Q99759 626 aa10.39□□□□□ -0.75
CD44-227ENST00000528086 CCM2Q9BSQ5 444 aa10.39□□□□□ -0.75
CD44-227ENST00000528086 AP1M1Q9BXS5 423 aa10.39□□□□□ -0.75
CD44-227ENST00000528086 EPB41L1Q9H4G0 881 aa10.39□□□□□ -0.75
CD44-227ENST00000528086 KIR3DX1Q9H7L2 352 aa10.39□□□□□ -0.75
CD44-227ENST00000528086 AKIRIN1Q9H9L7 192 aaPredicted RBP10.39□□□□□ -0.75
CD44-227ENST00000528086 ACSL5Q9ULC5 683 aa10.39□□□□□ -0.75
CD44-227ENST00000528086 PYCARDQ9ULZ3 195 aa10.39□□□□□ -0.75
CD44-227ENST00000528086 TMEM184BQ9Y519 407 aaPredicted RBP10.39□□□□□ -0.75
CD44-227ENST00000528086 CCDC88CQ9P219 2028 aa10.38□□□□□ -0.75
CD44-227ENST00000528086 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP10.38□□□□□ -0.75
CD44-227ENST00000528086 HEATR9A2RTY3 570 aa10.38□□□□□ -0.75
CD44-227ENST00000528086 OR5K3A6NET4 321 aa10.38□□□□□ -0.75
CD44-227ENST00000528086 IQCF5A8MTL0 148 aa10.38□□□□□ -0.75
CD44-227ENST00000528086 BTN3A3O00478 584 aa10.38□□□□□ -0.75
CD44-227ENST00000528086 TERTO14746 1132 aaKnown RBP10.38□□□□□ -0.75
CD44-227ENST00000528086 F7P08709 466 aaPredicted RBP10.38□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms