RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 SLC19A1P41440 591 aa13.97□□□□□ -0.17
NUP54-216ENST00000514901 EPHA4P54764 986 aa13.97□□□□□ -0.17
NUP54-216ENST00000514901 SHC2P98077 582 aa13.97□□□□□ -0.17
NUP54-216ENST00000514901 SQSTM1Q13501 440 aa13.97□□□□□ -0.17
NUP54-216ENST00000514901 RPE65Q16518 533 aa13.97□□□□□ -0.17
NUP54-216ENST00000514901 HP1BP3Q5SSJ5 553 aaPredicted RBP13.97□□□□□ -0.17
NUP54-216ENST00000514901 CDCP2Q5VXM1 449 aa13.97□□□□□ -0.17
NUP54-216ENST00000514901 CAPRIN2Q6IMN6 1127 aaKnown RBP13.97□□□□□ -0.17
NUP54-216ENST00000514901 ZDHHC24Q6UX98 284 aa13.97□□□□□ -0.17
NUP54-216ENST00000514901 SPRED1Q7Z699 444 aa13.97□□□□□ -0.17
NUP54-216ENST00000514901 CNTN4Q8IWV2 1026 aa13.97□□□□□ -0.17
NUP54-216ENST00000514901 PALM2Q8IXS6 379 aa13.97□□□□□ -0.17
NUP54-216ENST00000514901 ZBED8Q8IZ13 594 aa13.97□□□□□ -0.17
NUP54-216ENST00000514901 Q8N9G6 341 aaPredicted RBP13.97□□□□□ -0.17
NUP54-216ENST00000514901 FBXO36Q8NEA4 188 aa13.97□□□□□ -0.17
NUP54-216ENST00000514901 GSDMBQ8TAX9 411 aa13.97□□□□□ -0.17
NUP54-216ENST00000514901 ASZ1Q8WWH4 475 aa13.97□□□□□ -0.17
NUP54-216ENST00000514901 ELMO1Q92556 727 aa13.97□□□□□ -0.17
NUP54-216ENST00000514901 TMEM159Q96B96 161 aa13.97□□□□□ -0.17
NUP54-216ENST00000514901 CERS2Q96G23 380 aa13.97□□□□□ -0.17
NUP54-216ENST00000514901 CFAP36Q96G28 342 aa13.97□□□□□ -0.17
NUP54-216ENST00000514901 DPYSL5Q9BPU6 564 aa13.97□□□□□ -0.17
NUP54-216ENST00000514901 WWP1Q9H0M0 922 aa13.97□□□□□ -0.17
NUP54-216ENST00000514901 EPB41L1Q9H4G0 881 aa13.97□□□□□ -0.17
NUP54-216ENST00000514901 SAYSD1Q9NPB0 183 aa13.97□□□□□ -0.17
NUP54-216ENST00000514901 IARS2Q9NSE4 1012 aaKnown RBP13.97□□□□□ -0.17
NUP54-216ENST00000514901 IL1RAPL1Q9NZN1 696 aa13.97□□□□□ -0.17
NUP54-216ENST00000514901 SCHIP1Q9P0W5 487 aaPredicted RBP13.97□□□□□ -0.17
NUP54-216ENST00000514901 ZNF624Q9P2J8 865 aaPredicted RBP13.97□□□□□ -0.17
NUP54-216ENST00000514901 FBXO5Q9UKT4 447 aa13.97□□□□□ -0.17
NUP54-216ENST00000514901 WDR37Q9Y2I8 494 aa13.97□□□□□ -0.17
NUP54-216ENST00000514901 COMMD10Q9Y6G5 202 aa13.97□□□□□ -0.17
NUP54-216ENST00000514901 COLEC10Q9Y6Z7 277 aa13.97□□□□□ -0.17
NUP54-216ENST00000514901 B4GAT1O43505 415 aa13.96□□□□□ -0.17
NUP54-216ENST00000514901 MT-CO3P00414 261 aa13.96□□□□□ -0.17
NUP54-216ENST00000514901 APOA4P06727 396 aa13.96□□□□□ -0.17
NUP54-216ENST00000514901 ERVK-10P10266 1014 aa13.96□□□□□ -0.17
NUP54-216ENST00000514901 MTHFD1P11586 935 aaKnown RBP13.96□□□□□ -0.17
NUP54-216ENST00000514901 FMO4P31512 558 aa13.96□□□□□ -0.17
NUP54-216ENST00000514901 LEPRP48357 1165 aaKnown RBP13.96□□□□□ -0.17
NUP54-216ENST00000514901 EIF3BP55884 814 aaKnown RBP13.96□□□□□ -0.17
NUP54-216ENST00000514901 CCL7P80098 99 aa13.96□□□□□ -0.17
NUP54-216ENST00000514901 GPLD1P80108 840 aa13.96□□□□□ -0.17
NUP54-216ENST00000514901 CTBP1Q13363 440 aa13.96□□□□□ -0.17
NUP54-216ENST00000514901 SPIDRQ14159 915 aa13.96□□□□□ -0.17
NUP54-216ENST00000514901 TMED2Q15363 201 aa13.96□□□□□ -0.17
NUP54-216ENST00000514901 TRADDQ15628 312 aa13.96□□□□□ -0.17
NUP54-216ENST00000514901 SYTL3Q4VX76 610 aa13.96□□□□□ -0.17
NUP54-216ENST00000514901 HES3Q5TGS1 186 aa13.96□□□□□ -0.17
NUP54-216ENST00000514901 RBM44Q6ZP01 1051 aaKnown RBP13.96□□□□□ -0.17
NUP54-216ENST00000514901 TMEM26Q6ZUK4 368 aa13.96□□□□□ -0.17
NUP54-216ENST00000514901 CYS1Q717R9 158 aa13.96□□□□□ -0.17
NUP54-216ENST00000514901 GALNT7Q86SF2 657 aa13.96□□□□□ -0.17
NUP54-216ENST00000514901 ANKMY2Q8IV38 441 aa13.96□□□□□ -0.17
NUP54-216ENST00000514901 DENND6AQ8IWF6 608 aa13.96□□□□□ -0.17
NUP54-216ENST00000514901 C2CD4AQ8NCU7 369 aaPredicted RBP13.96□□□□□ -0.17
NUP54-216ENST00000514901 OR10G6Q8NH81 332 aa13.96□□□□□ -0.17
NUP54-216ENST00000514901 C12orf66Q96MD2 445 aa13.96□□□□□ -0.17
NUP54-216ENST00000514901 BIRC8Q96P09 236 aa13.96□□□□□ -0.17
NUP54-216ENST00000514901 DEPDC7Q96QD5 511 aa13.96□□□□□ -0.17
NUP54-216ENST00000514901 GFM1Q96RP9 751 aaKnown RBP13.96□□□□□ -0.17
NUP54-216ENST00000514901 WDR83Q9BRX9 315 aaKnown RBP13.96□□□□□ -0.17
NUP54-216ENST00000514901 OR52A5Q9H2C5 316 aa13.96□□□□□ -0.17
NUP54-216ENST00000514901 CCDC68Q9H2F9 335 aa13.96□□□□□ -0.17
NUP54-216ENST00000514901 SLC40A1Q9NP59 571 aa13.96□□□□□ -0.17
NUP54-216ENST00000514901 PPANQ9NQ55 473 aaKnown RBP13.96□□□□□ -0.17
NUP54-216ENST00000514901 KCNK4Q9NYG8 393 aa13.96□□□□□ -0.17
NUP54-216ENST00000514901 FAM8A1Q9UBU6 413 aa13.96□□□□□ -0.17
NUP54-216ENST00000514901 MTRF1LQ9UGC7 380 aaKnown RBP13.96□□□□□ -0.17
NUP54-216ENST00000514901 DMGDHQ9UI17 866 aaKnown RBP13.96□□□□□ -0.17
NUP54-216ENST00000514901 RABGEF1Q9UJ41 708 aa13.96□□□□□ -0.17
NUP54-216ENST00000514901 PSMD13Q9UNM6 376 aa13.96□□□□□ -0.17
NUP54-216ENST00000514901 WASF3Q9UPY6 502 aa13.96□□□□□ -0.17
NUP54-216ENST00000514901 CLCA2Q9UQC9 943 aa13.96□□□□□ -0.17
NUP54-216ENST00000514901 CRYL1Q9Y2S2 319 aa13.96□□□□□ -0.17
NUP54-216ENST00000514901 NEUROG3Q9Y4Z2 214 aa13.96□□□□□ -0.17
NUP54-216ENST00000514901 ESYT3A0FGR9 886 aa13.95□□□□□ -0.18
NUP54-216ENST00000514901 MED19A0JLT2 244 aaPredicted RBP13.95□□□□□ -0.18
NUP54-216ENST00000514901 SLC5A10A0PJK1 596 aa13.95□□□□□ -0.18
NUP54-216ENST00000514901 LILRA5A6NI73 299 aa13.95□□□□□ -0.18
NUP54-216ENST00000514901 OR52A4PA6NMU1 304 aa13.95□□□□□ -0.18
NUP54-216ENST00000514901 HYAL3O43820 417 aaPredicted RBP13.95□□□□□ -0.18
NUP54-216ENST00000514901 RPLP0P05388 317 aaKnown RBP13.95□□□□□ -0.18
NUP54-216ENST00000514901 PKMP14618 531 aaKnown RBP13.95□□□□□ -0.18
NUP54-216ENST00000514901 AOAHP28039 575 aa13.95□□□□□ -0.18
NUP54-216ENST00000514901 CCR7P32248 378 aa13.95□□□□□ -0.18
NUP54-216ENST00000514901 SLC1A2P43004 574 aa13.95□□□□□ -0.18
NUP54-216ENST00000514901 CARSP49589 748 aaKnown RBP13.95□□□□□ -0.18
NUP54-216ENST00000514901 OR1D5P58170 312 aa13.95□□□□□ -0.18
NUP54-216ENST00000514901 ILF2Q12905 390 aaKnown RBP13.95□□□□□ -0.18
NUP54-216ENST00000514901 CUL1Q13616 776 aa13.95□□□□□ -0.18
NUP54-216ENST00000514901 FASTKD3Q14CZ7 662 aaKnown RBP13.95□□□□□ -0.18
NUP54-216ENST00000514901 TEDDM1Q5T9Z0 273 aa13.95□□□□□ -0.18
NUP54-216ENST00000514901 XKR5Q6UX68 686 aa13.95□□□□□ -0.18
NUP54-216ENST00000514901 IFT20Q8IY31 132 aa13.95□□□□□ -0.18
NUP54-216ENST00000514901 DCBLD1Q8N8Z6 715 aa13.95□□□□□ -0.18
NUP54-216ENST00000514901 AHCYL2Q96HN2 611 aaKnown RBP13.95□□□□□ -0.18
NUP54-216ENST00000514901 INSM2Q96T92 566 aaPredicted RBP13.95□□□□□ -0.18
NUP54-216ENST00000514901 PLAC1Q9HBJ0 212 aa13.95□□□□□ -0.18
NUP54-216ENST00000514901 LATS2Q9NRM7 1088 aa13.95□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms