RNA–Protein interactions for RNA: ENST00000514305.5

USP53-208, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 2

Gene USP53, Length 504 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-208ENST00000514305 GOLGA8KD6RF30 607 aa19.81■□□□□ 0.76
USP53-208ENST00000514305 GOLGA8TH3BQL2 631 aa19.81■□□□□ 0.76
USP53-208ENST00000514305 TPP1O14773 563 aa19.81■□□□□ 0.76
USP53-208ENST00000514305 DNAJC6O75061 913 aa19.81■□□□□ 0.76
USP53-208ENST00000514305 MTX2O75431 263 aa19.81■□□□□ 0.76
USP53-208ENST00000514305 ERLIN1O75477 346 aa19.81■□□□□ 0.76
USP53-208ENST00000514305 RPS3P23396 243 aaKnown RBP eCLIP19.81■□□□□ 0.76
USP53-208ENST00000514305 ITPKBP27987 946 aa19.81■□□□□ 0.76
USP53-208ENST00000514305 POLD2P49005 469 aa19.81■□□□□ 0.76
USP53-208ENST00000514305 KYNUQ16719 465 aa19.81■□□□□ 0.76
USP53-208ENST00000514305 DEFB133Q30KQ1 61 aa19.81■□□□□ 0.76
USP53-208ENST00000514305 TBC1D25Q3MII6 688 aa19.81■□□□□ 0.76
USP53-208ENST00000514305 BCL7AQ4VC05 210 aa19.81■□□□□ 0.76
USP53-208ENST00000514305 PYCR3Q53H96 274 aa19.81■□□□□ 0.76
USP53-208ENST00000514305 CDCP2Q5VXM1 449 aa19.81■□□□□ 0.76
USP53-208ENST00000514305 PTRHD1Q6GMV3 140 aaKnown RBP19.81■□□□□ 0.76
USP53-208ENST00000514305 EMBQ6PCB8 327 aa19.81■□□□□ 0.76
USP53-208ENST00000514305 CAPN12Q6ZSI9 719 aa19.81■□□□□ 0.76
USP53-208ENST00000514305 CNTN4Q8IWV2 1026 aa19.81■□□□□ 0.76
USP53-208ENST00000514305 CRELD1Q96HD1 420 aa19.81■□□□□ 0.76
USP53-208ENST00000514305 CCDC77Q9BR77 488 aa19.81■□□□□ 0.76
USP53-208ENST00000514305 TRIM56Q9BRZ2 755 aaKnown RBP19.81■□□□□ 0.76
USP53-208ENST00000514305 TIMM29Q9BSF4 260 aa19.81■□□□□ 0.76
USP53-208ENST00000514305 PARD6BQ9BYG5 372 aa19.81■□□□□ 0.76
USP53-208ENST00000514305 ARFGAP3Q9NP61 516 aa19.81■□□□□ 0.76
USP53-208ENST00000514305 KLF15Q9UIH9 416 aa19.81■□□□□ 0.76
USP53-208ENST00000514305 U3KQA8 63 aa19.81■□□□□ 0.76
USP53-208ENST00000514305 IGSF10Q6WRI0 2623 aa19.81■□□□□ 0.76
USP53-208ENST00000514305 ZNF106Q9H2Y7 1883 aaKnown RBP19.8■□□□□ 0.76
USP53-208ENST00000514305 A0A087WUV0 522 aaPredicted RBP19.8■□□□□ 0.76
USP53-208ENST00000514305 CPED1A4D0V7 1026 aa19.8■□□□□ 0.76
USP53-208ENST00000514305 KPNA5O15131 536 aa19.8■□□□□ 0.76
USP53-208ENST00000514305 GPR39O43194 453 aa19.8■□□□□ 0.76
USP53-208ENST00000514305 CSO75390 466 aaKnown RBP19.8■□□□□ 0.76
USP53-208ENST00000514305 ESR1P03372 595 aa19.8■□□□□ 0.76
USP53-208ENST00000514305 RPIAP49247 311 aa19.8■□□□□ 0.76
USP53-208ENST00000514305 VSNL1P62760 191 aa19.8■□□□□ 0.76
USP53-208ENST00000514305 PLOD1Q02809 727 aaPredicted RBP19.8■□□□□ 0.76
USP53-208ENST00000514305 INSCQ1MX18 579 aa19.8■□□□□ 0.76
USP53-208ENST00000514305 PRRT3Q5FWE3 981 aa19.8■□□□□ 0.76
USP53-208ENST00000514305 TPRG1LQ5T0D9 272 aa19.8■□□□□ 0.76
USP53-208ENST00000514305 TEDDM1Q5T9Z0 273 aa19.8■□□□□ 0.76
USP53-208ENST00000514305 LVRNQ6Q4G3 990 aa19.8■□□□□ 0.76
USP53-208ENST00000514305 CHST15Q7LFX5 561 aaPredicted RBP19.8■□□□□ 0.76
USP53-208ENST00000514305 AMZ2Q86W34 360 aa19.8■□□□□ 0.76
USP53-208ENST00000514305 LSMEM2Q8N112 164 aa19.8■□□□□ 0.76
USP53-208ENST00000514305 RASGEF1AQ8N9B8 481 aa19.8■□□□□ 0.76
USP53-208ENST00000514305 C2CD4AQ8NCU7 369 aaPredicted RBP19.8■□□□□ 0.76
USP53-208ENST00000514305 ZDHHC16Q969W1 377 aa19.8■□□□□ 0.76
USP53-208ENST00000514305 LINC00615Q96LM1 132 aaPredicted RBP19.8■□□□□ 0.76
USP53-208ENST00000514305 CYTH2Q99418 400 aa19.8■□□□□ 0.76
USP53-208ENST00000514305 WDR83Q9BRX9 315 aaKnown RBP19.8■□□□□ 0.76
USP53-208ENST00000514305 MRPL40Q9NQ50 206 aaKnown RBP19.8■□□□□ 0.76
USP53-208ENST00000514305 NINJ2Q9NZG7 142 aa19.8■□□□□ 0.76
USP53-208ENST00000514305 MARCH4Q9P2E8 410 aaPredicted RBP19.8■□□□□ 0.76
USP53-208ENST00000514305 C17orf113A0A1B0GUU1 675 aa19.79■□□□□ 0.76
USP53-208ENST00000514305 TCRBV9S1A1TA0A576 114 aa19.79■□□□□ 0.76
USP53-208ENST00000514305 ANXA6P08133 673 aa19.79■□□□□ 0.76
USP53-208ENST00000514305 SLC2A4P14672 509 aa19.79■□□□□ 0.76
USP53-208ENST00000514305 LEPRP48357 1165 aaKnown RBP19.79■□□□□ 0.76
USP53-208ENST00000514305 PRLHRP49683 370 aa19.79■□□□□ 0.76
USP53-208ENST00000514305 CLCNKAP51800 687 aa19.79■□□□□ 0.76
USP53-208ENST00000514305 CTBP1Q13363 440 aa19.79■□□□□ 0.76
USP53-208ENST00000514305 NR0B2Q15466 257 aa19.79■□□□□ 0.76
USP53-208ENST00000514305 KLHL38Q2WGJ6 581 aa19.79■□□□□ 0.76
USP53-208ENST00000514305 ZNF648Q5T619 568 aaPredicted RBP19.79■□□□□ 0.76
USP53-208ENST00000514305 DET1Q7L5Y6 550 aa19.79■□□□□ 0.76
USP53-208ENST00000514305 EFL1Q7Z2Z2 1120 aaKnown RBP19.79■□□□□ 0.76
USP53-208ENST00000514305 TAF8Q7Z7C8 310 aa19.79■□□□□ 0.76
USP53-208ENST00000514305 CTAGE3PQ8IX95 158 aa19.79■□□□□ 0.76
USP53-208ENST00000514305 BEND7Q8N7W2 519 aaPredicted RBP19.79■□□□□ 0.76
USP53-208ENST00000514305 FBF1Q8TES7 1133 aa19.79■□□□□ 0.76
USP53-208ENST00000514305 SGF29Q96ES7 293 aa19.79■□□□□ 0.76
USP53-208ENST00000514305 PDXPQ96GD0 296 aa19.79■□□□□ 0.76
USP53-208ENST00000514305 CCM2Q9BSQ5 444 aa19.79■□□□□ 0.76
USP53-208ENST00000514305 IL1RAPL1Q9NZN1 696 aa19.79■□□□□ 0.76
USP53-208ENST00000514305 RAB21Q9UL25 225 aa19.79■□□□□ 0.76
USP53-208ENST00000514305 IKBKGQ9Y6K9 419 aa19.79■□□□□ 0.76
USP53-208ENST00000514305 BAHCC1Q9P281 2608 aa19.78■□□□□ 0.76
USP53-208ENST00000514305 OR2AG2A6NM03 316 aa19.78■□□□□ 0.76
USP53-208ENST00000514305 E5RI56 91 aa19.78■□□□□ 0.76
USP53-208ENST00000514305 POP7O75817 140 aaKnown RBP19.78■□□□□ 0.76
USP53-208ENST00000514305 ACSL3O95573 720 aa19.78■□□□□ 0.76
USP53-208ENST00000514305 S1PR4O95977 384 aa19.78■□□□□ 0.76
USP53-208ENST00000514305 MPOP05164 745 aa19.78■□□□□ 0.76
USP53-208ENST00000514305 ABHD2P08910 425 aa19.78■□□□□ 0.76
USP53-208ENST00000514305 PRSS56P0CW18 603 aa19.78■□□□□ 0.76
USP53-208ENST00000514305 SLC1A2P43004 574 aa19.78■□□□□ 0.76
USP53-208ENST00000514305 CD151P48509 253 aa19.78■□□□□ 0.76
USP53-208ENST00000514305 EIF3BP55884 814 aaKnown RBP19.78■□□□□ 0.76
USP53-208ENST00000514305 GPX6P59796 221 aa19.78■□□□□ 0.76
USP53-208ENST00000514305 GABREP78334 506 aa19.78■□□□□ 0.76
USP53-208ENST00000514305 SEMA3AQ14563 771 aa19.78■□□□□ 0.76
USP53-208ENST00000514305 UGT3A1Q6NUS8 523 aa19.78■□□□□ 0.76
USP53-208ENST00000514305 GUSBP11Q6P575 273 aa19.78■□□□□ 0.76
USP53-208ENST00000514305 TRMT10BQ6PF06 316 aaKnown RBP19.78■□□□□ 0.76
USP53-208ENST00000514305 CRTC3Q6UUV7 619 aa19.78■□□□□ 0.76
USP53-208ENST00000514305 ZNF578Q96N58 590 aaPredicted RBP19.78■□□□□ 0.76
USP53-208ENST00000514305 UBL7Q96S82 380 aaPredicted RBP19.78■□□□□ 0.76
USP53-208ENST00000514305 CPNE1Q99829 537 aa19.78■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms