RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 TRIM23P36406 574 aa11.09□□□□□ -0.63
LIMCH1-217ENST00000512946 MECP2P51608 486 aaKnown RBP11.09□□□□□ -0.63
LIMCH1-217ENST00000512946 PRKCDQ05655 676 aa11.09□□□□□ -0.63
LIMCH1-217ENST00000512946 CTXN3Q4LDR2 81 aa11.09□□□□□ -0.63
LIMCH1-217ENST00000512946 WDR45BQ5MNZ6 344 aa11.09□□□□□ -0.63
LIMCH1-217ENST00000512946 FAM199XQ6PEV8 388 aaPredicted RBP11.09□□□□□ -0.63
LIMCH1-217ENST00000512946 DCDC5Q6ZRR9 648 aa11.09□□□□□ -0.63
LIMCH1-217ENST00000512946 PIAS4Q8N2W9 510 aaPredicted RBP11.09□□□□□ -0.63
LIMCH1-217ENST00000512946 TWIST2Q8WVJ9 160 aa11.09□□□□□ -0.63
LIMCH1-217ENST00000512946 S100A16Q96FQ6 103 aaKnown RBP11.09□□□□□ -0.63
LIMCH1-217ENST00000512946 CEP295NLQ96MC4 621 aa11.09□□□□□ -0.63
LIMCH1-217ENST00000512946 NECAB3Q96P71 396 aaPredicted RBP11.09□□□□□ -0.63
LIMCH1-217ENST00000512946 TCF25Q9BQ70 676 aa11.09□□□□□ -0.63
LIMCH1-217ENST00000512946 FAM124BQ9H5Z6 455 aaPredicted RBP11.09□□□□□ -0.63
LIMCH1-217ENST00000512946 LRRC4CQ9HCJ2 640 aa11.09□□□□□ -0.63
LIMCH1-217ENST00000512946 MAT2BQ9NZL9 334 aa11.09□□□□□ -0.63
LIMCH1-217ENST00000512946 ACSL5Q9ULC5 683 aa11.09□□□□□ -0.63
LIMCH1-217ENST00000512946 ABCA8O94911 1581 aa11.09□□□□□ -0.63
LIMCH1-217ENST00000512946 FAM234BA2RU67 622 aa11.09□□□□□ -0.63
LIMCH1-217ENST00000512946 M0R129 80 aa11.09□□□□□ -0.63
LIMCH1-217ENST00000512946 SLC37A4O43826 429 aa11.09□□□□□ -0.63
LIMCH1-217ENST00000512946 HNRNPLP14866 589 aaKnown RBP eCLIP11.09□□□□□ -0.63
LIMCH1-217ENST00000512946 NCK1P16333 377 aa11.09□□□□□ -0.63
LIMCH1-217ENST00000512946 SNRPD1P62314 119 aaKnown RBP11.09□□□□□ -0.63
LIMCH1-217ENST00000512946 GRM3Q14832 879 aa11.09□□□□□ -0.63
LIMCH1-217ENST00000512946 CAPN13Q6MZZ7 669 aaPredicted RBP11.09□□□□□ -0.63
LIMCH1-217ENST00000512946 FAM122CQ6P4D5 195 aa11.09□□□□□ -0.63
LIMCH1-217ENST00000512946 ZNF709Q8N972 641 aa11.09□□□□□ -0.63
LIMCH1-217ENST00000512946 HJURPQ8NCD3 748 aaPredicted RBP11.09□□□□□ -0.63
LIMCH1-217ENST00000512946 SPATA20Q8TB22 786 aa11.09□□□□□ -0.63
LIMCH1-217ENST00000512946 UQCC2Q9BRT2 126 aa11.09□□□□□ -0.63
LIMCH1-217ENST00000512946 PRDM5Q9NQX1 630 aaPredicted RBP11.09□□□□□ -0.63
LIMCH1-217ENST00000512946 FAM86C1Q9NVL1 165 aa11.09□□□□□ -0.63
LIMCH1-217ENST00000512946 ERBB3P21860 1342 aa11.09□□□□□ -0.63
LIMCH1-217ENST00000512946 KCNU1A8MYU2 1149 aa11.09□□□□□ -0.63
LIMCH1-217ENST00000512946 PAK4O96013 591 aaPredicted RBP11.09□□□□□ -0.63
LIMCH1-217ENST00000512946 NPPAP01160 153 aa11.09□□□□□ -0.63
LIMCH1-217ENST00000512946 NR2C1P13056 603 aa11.09□□□□□ -0.63
LIMCH1-217ENST00000512946 CAPZA1P52907 286 aa11.09□□□□□ -0.63
LIMCH1-217ENST00000512946 RAPSNQ13702 412 aa11.09□□□□□ -0.63
LIMCH1-217ENST00000512946 HSDL1Q3SXM5 330 aa11.09□□□□□ -0.63
LIMCH1-217ENST00000512946 DALRD3Q5D0E6 543 aaKnown RBP11.09□□□□□ -0.63
LIMCH1-217ENST00000512946 SH3D19Q5HYK7 790 aa11.09□□□□□ -0.63
LIMCH1-217ENST00000512946 PAOXQ6QHF9 649 aa11.09□□□□□ -0.63
LIMCH1-217ENST00000512946 FAM196AQ6ZSG2 479 aa11.09□□□□□ -0.63
LIMCH1-217ENST00000512946 ZSCAN1Q8NBB4 408 aa11.09□□□□□ -0.63
LIMCH1-217ENST00000512946 PPA2Q9H2U2 334 aa11.09□□□□□ -0.63
LIMCH1-217ENST00000512946 KCTD5Q9NXV2 234 aa11.09□□□□□ -0.63
LIMCH1-217ENST00000512946 TLR6Q9Y2C9 796 aa11.09□□□□□ -0.63
LIMCH1-217ENST00000512946 CDH10Q9Y6N8 788 aa11.09□□□□□ -0.63
LIMCH1-217ENST00000512946 FFAR3O14843 346 aa11.09□□□□□ -0.63
LIMCH1-217ENST00000512946 GPR42O15529 346 aa11.09□□□□□ -0.63
LIMCH1-217ENST00000512946 TSPAN1O60635 241 aa11.09□□□□□ -0.63
LIMCH1-217ENST00000512946 TBX10O75333 385 aa11.09□□□□□ -0.63
LIMCH1-217ENST00000512946 STXBP1P61764 594 aaKnown RBP11.09□□□□□ -0.63
LIMCH1-217ENST00000512946 ADIGQ0VDE8 80 aa11.09□□□□□ -0.63
LIMCH1-217ENST00000512946 UBXN11Q5T124 520 aa11.09□□□□□ -0.63
LIMCH1-217ENST00000512946 BORAQ6PGQ7 559 aa11.09□□□□□ -0.63
LIMCH1-217ENST00000512946 PGAP1Q75T13 922 aa11.09□□□□□ -0.63
LIMCH1-217ENST00000512946 OR4L1Q8NH43 312 aa11.09□□□□□ -0.63
LIMCH1-217ENST00000512946 RPLP0P6Q8NHW5 317 aa11.09□□□□□ -0.63
LIMCH1-217ENST00000512946 DUSP16Q9BY84 665 aa11.09□□□□□ -0.63
LIMCH1-217ENST00000512946 ARMC1Q9NVT9 282 aa11.09□□□□□ -0.63
LIMCH1-217ENST00000512946 A0A1B0GVI7 797 aa11.08□□□□□ -0.64
LIMCH1-217ENST00000512946 A0A1W2PPM1 405 aa11.08□□□□□ -0.64
LIMCH1-217ENST00000512946 XPNPEP2O43895 674 aa11.08□□□□□ -0.64
LIMCH1-217ENST00000512946 ZSCAN5DPP0CG00 497 aa11.08□□□□□ -0.64
LIMCH1-217ENST00000512946 MPSTP25325 297 aa11.08□□□□□ -0.64
LIMCH1-217ENST00000512946 GRIA2P42262 883 aa11.08□□□□□ -0.64
LIMCH1-217ENST00000512946 MAP2K3P46734 347 aa11.08□□□□□ -0.64
LIMCH1-217ENST00000512946 HNRNPFP52597 415 aaKnown RBP11.08□□□□□ -0.64
LIMCH1-217ENST00000512946 ARFRP1Q13795 201 aa11.08□□□□□ -0.64
LIMCH1-217ENST00000512946 TPGS1Q6ZTW0 290 aa11.08□□□□□ -0.64
LIMCH1-217ENST00000512946 ANKRD23Q86SG2 305 aa11.08□□□□□ -0.64
LIMCH1-217ENST00000512946 MARCH9Q86YJ5 346 aa11.08□□□□□ -0.64
LIMCH1-217ENST00000512946 MAP4K3Q8IVH8 894 aa11.08□□□□□ -0.64
LIMCH1-217ENST00000512946 ANKFN1Q8N957 763 aa11.08□□□□□ -0.64
LIMCH1-217ENST00000512946 RERGQ96A58 199 aaPredicted RBP11.08□□□□□ -0.64
LIMCH1-217ENST00000512946 LIN37Q96GY3 246 aaPredicted RBP11.08□□□□□ -0.64
LIMCH1-217ENST00000512946 RAD9AQ99638 391 aa11.08□□□□□ -0.64
LIMCH1-217ENST00000512946 CCDC106Q9BWC9 280 aa11.08□□□□□ -0.64
LIMCH1-217ENST00000512946 BTBD1Q9H0C5 482 aa11.08□□□□□ -0.64
LIMCH1-217ENST00000512946 POLR2J3Q9H1A7 115 aaKnown RBP11.08□□□□□ -0.64
LIMCH1-217ENST00000512946 RETREG1Q9H6L5 497 aa11.08□□□□□ -0.64
LIMCH1-217ENST00000512946 WDR55Q9H6Y2 383 aaPredicted RBP11.08□□□□□ -0.64
LIMCH1-217ENST00000512946 MIOSQ9NXC5 875 aa11.08□□□□□ -0.64
LIMCH1-217ENST00000512946 ERVK-19Q9WJR5 959 aa11.08□□□□□ -0.64
LIMCH1-217ENST00000512946 CBY1Q9Y3M2 126 aa11.08□□□□□ -0.64
LIMCH1-217ENST00000512946 TEX51A0A1B0GUA7 166 aa11.08□□□□□ -0.64
LIMCH1-217ENST00000512946 H3BSA7 217 aa11.08□□□□□ -0.64
LIMCH1-217ENST00000512946 CERS1P27544 350 aa11.08□□□□□ -0.64
LIMCH1-217ENST00000512946 CLCA4Q14CN2 919 aa11.08□□□□□ -0.64
LIMCH1-217ENST00000512946 CRYBG2Q8N1P7 616 aa11.08□□□□□ -0.64
LIMCH1-217ENST00000512946 MYO19Q96H55 970 aa11.08□□□□□ -0.64
LIMCH1-217ENST00000512946 FEM1CQ96JP0 617 aa11.08□□□□□ -0.64
LIMCH1-217ENST00000512946 MTG2Q9H4K7 406 aa11.08□□□□□ -0.64
LIMCH1-217ENST00000512946 PTTG3PQ9NZH4 202 aa11.08□□□□□ -0.64
LIMCH1-217ENST00000512946 RNF6Q9Y252 685 aa11.08□□□□□ -0.64
LIMCH1-217ENST00000512946 TMEM2Q9UHN6 1383 aa11.08□□□□□ -0.64
LIMCH1-217ENST00000512946 ATP6AP2O75787 350 aa11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms