RNA–Protein interactions for RNA: ENST00000504788.5

LMNB1-208, Transcript of lamin B1, human

TSL 2

Gene LMNB1, Length 1,801 nt, Biotype processed transcript, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LMNB1-208	ENST00000504788	STX2	P32856	288 aa		4.84	□□□□□ -1.63
LMNB1-208	ENST00000504788	GP5	P40197	560 aa		4.84	□□□□□ -1.63
LMNB1-208	ENST00000504788	GNPDA1	P46926	289 aa		4.84	□□□□□ -1.63
LMNB1-208	ENST00000504788	FASLG	P48023	281 aa		4.84	□□□□□ -1.63
LMNB1-208	ENST00000504788	CSE1L	P55060	971 aa	Known RBP	4.84	□□□□□ -1.63
LMNB1-208	ENST00000504788	EIF3B	P55884	814 aa	Known RBP	4.84	□□□□□ -1.63
LMNB1-208	ENST00000504788	HNRNPK	P61978	463 aa	Known RBP eCLIP	4.84	□□□□□ -1.63
LMNB1-208	ENST00000504788	UBE2I	P63279	158 aa	Known RBP	4.84	□□□□□ -1.63
LMNB1-208	ENST00000504788	IL9R	Q01113	521 aa		4.84	□□□□□ -1.63
LMNB1-208	ENST00000504788	DLG1	Q12959	904 aa		4.84	□□□□□ -1.63
LMNB1-208	ENST00000504788	SLC14A1	Q13336	389 aa		4.84	□□□□□ -1.63
LMNB1-208	ENST00000504788	NAB1	Q13506	487 aa		4.84	□□□□□ -1.63
LMNB1-208	ENST00000504788	C1orf61	Q13536	156 aa		4.84	□□□□□ -1.63
LMNB1-208	ENST00000504788	ZNF460	Q14592	562 aa		4.84	□□□□□ -1.63
LMNB1-208	ENST00000504788	CLCA4	Q14CN2	919 aa		4.84	□□□□□ -1.63
LMNB1-208	ENST00000504788	TEAD4	Q15561	434 aa		4.84	□□□□□ -1.63
LMNB1-208	ENST00000504788	PROX2	Q3B8N5	592 aa		4.84	□□□□□ -1.63
LMNB1-208	ENST00000504788	CHCHD2P9	Q5T1J5	151 aa	Predicted RBP	4.84	□□□□□ -1.63
LMNB1-208	ENST00000504788	RNF187	Q5TA31	235 aa	Predicted RBP	4.84	□□□□□ -1.63
LMNB1-208	ENST00000504788	AGAP9	Q5VTM2	703 aa		4.84	□□□□□ -1.63
LMNB1-208	ENST00000504788	LVRN	Q6Q4G3	990 aa		4.84	□□□□□ -1.63
LMNB1-208	ENST00000504788	CRTC3	Q6UUV7	619 aa		4.84	□□□□□ -1.63
LMNB1-208	ENST00000504788	IL27RA	Q6UWB1	636 aa		4.84	□□□□□ -1.63
LMNB1-208	ENST00000504788	DET1	Q7L5Y6	550 aa		4.84	□□□□□ -1.63
LMNB1-208	ENST00000504788	CHST15	Q7LFX5	561 aa	Predicted RBP	4.84	□□□□□ -1.63
LMNB1-208	ENST00000504788	TAS2R42	Q7RTR8	314 aa		4.84	□□□□□ -1.63
LMNB1-208	ENST00000504788	STRA8	Q7Z7C7	330 aa		4.84	□□□□□ -1.63
LMNB1-208	ENST00000504788	CLEC14A	Q86T13	490 aa		4.84	□□□□□ -1.63
LMNB1-208	ENST00000504788	GATAD2A	Q86YP4	633 aa		4.84	□□□□□ -1.63
LMNB1-208	ENST00000504788	GALNT13	Q8IUC8	556 aa		4.84	□□□□□ -1.63
LMNB1-208	ENST00000504788	HID1	Q8IV36	788 aa		4.84	□□□□□ -1.63
LMNB1-208	ENST00000504788	SLC35F3	Q8IY50	421 aa		4.84	□□□□□ -1.63
LMNB1-208	ENST00000504788	SLC22A15	Q8IZD6	547 aa		4.84	□□□□□ -1.63
LMNB1-208	ENST00000504788	CENPL	Q8N0S6	344 aa	Predicted RBP	4.84	□□□□□ -1.63
LMNB1-208	ENST00000504788	SDR16C5	Q8N3Y7	309 aa		4.84	□□□□□ -1.63
LMNB1-208	ENST00000504788	SFRP1	Q8N474	314 aa		4.84	□□□□□ -1.63
LMNB1-208	ENST00000504788	FAM181A	Q8N9Y4	354 aa		4.84	□□□□□ -1.63
LMNB1-208	ENST00000504788	OR4C6	Q8NH72	309 aa		4.84	□□□□□ -1.63
LMNB1-208	ENST00000504788	HM13	Q8TCT9	377 aa		4.84	□□□□□ -1.63
LMNB1-208	ENST00000504788	ANKRD49	Q8WVL7	239 aa		4.84	□□□□□ -1.63
LMNB1-208	ENST00000504788	PDLIM5	Q96HC4	596 aa	Known RBP	4.84	□□□□□ -1.63
LMNB1-208	ENST00000504788	RMDN2	Q96LZ7	410 aa		4.84	□□□□□ -1.63
LMNB1-208	ENST00000504788	CYTH2	Q99418	400 aa		4.84	□□□□□ -1.63
LMNB1-208	ENST00000504788	NDN	Q99608	321 aa		4.84	□□□□□ -1.63
LMNB1-208	ENST00000504788	DPEP2	Q9H4A9	486 aa		4.84	□□□□□ -1.63
LMNB1-208	ENST00000504788	ZNF446	Q9NWS9	450 aa		4.84	□□□□□ -1.63
LMNB1-208	ENST00000504788	KLHL42	Q9P2K6	505 aa		4.84	□□□□□ -1.63
LMNB1-208	ENST00000504788	CTNNAL1	Q9UBT7	734 aa		4.84	□□□□□ -1.63
LMNB1-208	ENST00000504788	CORO1C	Q9ULV4	474 aa	Predicted RBP	4.84	□□□□□ -1.63
LMNB1-208	ENST00000504788	DHRS7	Q9Y394	339 aa		4.84	□□□□□ -1.63
LMNB1-208	ENST00000504788	PCDHB1	Q9Y5F3	818 aa		4.84	□□□□□ -1.63
LMNB1-208	ENST00000504788	PCDHGB2	Q9Y5G2	931 aa		4.84	□□□□□ -1.63
LMNB1-208	ENST00000504788	FRY	Q5TBA9	3013 aa		4.84	□□□□□ -1.63
LMNB1-208	ENST00000504788	LOC400499	M0QZD8	3231 aa		4.84	□□□□□ -1.64
LMNB1-208	ENST00000504788		A0A087WUV0	522 aa	Predicted RBP	4.83	□□□□□ -1.64
LMNB1-208	ENST00000504788	FAM95C	A0A1B0GW59	222 aa		4.83	□□□□□ -1.64
LMNB1-208	ENST00000504788	KLHL33	A6NCF5	533 aa		4.83	□□□□□ -1.64
LMNB1-208	ENST00000504788	TARM1	B6A8C7	271 aa		4.83	□□□□□ -1.64
LMNB1-208	ENST00000504788	GFY	I3L273	518 aa		4.83	□□□□□ -1.64
LMNB1-208	ENST00000504788	MAP2K7	O14733	419 aa		4.83	□□□□□ -1.64
LMNB1-208	ENST00000504788	PPM1D	O15297	605 aa		4.83	□□□□□ -1.64
LMNB1-208	ENST00000504788	DFNA5	O60443	496 aa		4.83	□□□□□ -1.64
LMNB1-208	ENST00000504788	KCNJ13	O60928	360 aa		4.83	□□□□□ -1.64
LMNB1-208	ENST00000504788	SASH3	O75995	380 aa		4.83	□□□□□ -1.64
LMNB1-208	ENST00000504788	TOP3B	O95985	862 aa	Known RBP	4.83	□□□□□ -1.64
LMNB1-208	ENST00000504788	TNF	P01375	233 aa		4.83	□□□□□ -1.64
LMNB1-208	ENST00000504788	GSTM1	P09488	218 aa		4.83	□□□□□ -1.64
LMNB1-208	ENST00000504788	ERG	P11308	486 aa		4.83	□□□□□ -1.64
LMNB1-208	ENST00000504788	F3	P13726	295 aa		4.83	□□□□□ -1.64
LMNB1-208	ENST00000504788	XRCC1	P18887	633 aa	Predicted RBP	4.83	□□□□□ -1.64
LMNB1-208	ENST00000504788	RPL10	P27635	214 aa	Known RBP	4.83	□□□□□ -1.64
LMNB1-208	ENST00000504788	SLC19A1	P41440	591 aa		4.83	□□□□□ -1.64
LMNB1-208	ENST00000504788	PREP	P48147	710 aa		4.83	□□□□□ -1.64
LMNB1-208	ENST00000504788	CD151	P48509	253 aa		4.83	□□□□□ -1.64
LMNB1-208	ENST00000504788	KCNC1	P48547	511 aa		4.83	□□□□□ -1.64
LMNB1-208	ENST00000504788	BLK	P51451	505 aa		4.83	□□□□□ -1.64
LMNB1-208	ENST00000504788	GSTM4	Q03013	218 aa		4.83	□□□□□ -1.64
LMNB1-208	ENST00000504788	ZNF844	Q08AG5	666 aa		4.83	□□□□□ -1.64
LMNB1-208	ENST00000504788	RPA4	Q13156	261 aa		4.83	□□□□□ -1.64
LMNB1-208	ENST00000504788	THOC5	Q13769	683 aa	Known RBP	4.83	□□□□□ -1.64
LMNB1-208	ENST00000504788	BRD3	Q15059	726 aa		4.83	□□□□□ -1.64
LMNB1-208	ENST00000504788	PPP1R3A	Q16821	1122 aa		4.83	□□□□□ -1.64
LMNB1-208	ENST00000504788	UAP1L1	Q3KQV9	507 aa		4.83	□□□□□ -1.64
LMNB1-208	ENST00000504788	ACSBG2	Q5FVE4	666 aa		4.83	□□□□□ -1.64
LMNB1-208	ENST00000504788	C6orf132	Q5T0Z8	1188 aa		4.83	□□□□□ -1.64
LMNB1-208	ENST00000504788	HECTD2	Q5U5R9	776 aa		4.83	□□□□□ -1.64
LMNB1-208	ENST00000504788	IYD	Q6PHW0	289 aa		4.83	□□□□□ -1.64
LMNB1-208	ENST00000504788	PAQR3	Q6TCH7	311 aa		4.83	□□□□□ -1.64
LMNB1-208	ENST00000504788	SBSN	Q6UWP8	590 aa		4.83	□□□□□ -1.64
LMNB1-208	ENST00000504788	CEP128	Q6ZU80	1094 aa		4.83	□□□□□ -1.64
LMNB1-208	ENST00000504788	CMC1	Q7Z7K0	106 aa		4.83	□□□□□ -1.64
LMNB1-208	ENST00000504788	AMZ2	Q86W34	360 aa		4.83	□□□□□ -1.64
LMNB1-208	ENST00000504788	TRAPPC5	Q8IUR0	188 aa		4.83	□□□□□ -1.64
LMNB1-208	ENST00000504788	LRRC56	Q8IYG6	542 aa	Predicted RBP	4.83	□□□□□ -1.64
LMNB1-208	ENST00000504788	PLD6	Q8N2A8	252 aa	Known RBP	4.83	□□□□□ -1.64
LMNB1-208	ENST00000504788	PPM1N	Q8N819	430 aa		4.83	□□□□□ -1.64
LMNB1-208	ENST00000504788	SIDT2	Q8NBJ9	832 aa	Known RBP	4.83	□□□□□ -1.64
LMNB1-208	ENST00000504788	UHMK1	Q8TAS1	419 aa	Known RBP	4.83	□□□□□ -1.64
LMNB1-208	ENST00000504788	SLC37A2	Q8TED4	501 aa		4.83	□□□□□ -1.64
LMNB1-208	ENST00000504788	DENND1A	Q8TEH3	1009 aa		4.83	□□□□□ -1.64

Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms