RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 GPR45Q9Y5Y3 372 aa16.28■□□□□ 0.2
CCDC88B-210ENST00000494566 ANAPC1Q9H1A4 1944 aa16.28■□□□□ 0.2
CCDC88B-210ENST00000494566 MYOFQ9NZM1 2061 aa16.28■□□□□ 0.2
CCDC88B-210ENST00000494566 PRRG1O14668 218 aa16.28■□□□□ 0.2
CCDC88B-210ENST00000494566 SH3BGRP55822 239 aaPredicted RBP16.28■□□□□ 0.2
CCDC88B-210ENST00000494566 KCNK10P57789 538 aa16.28■□□□□ 0.2
CCDC88B-210ENST00000494566 ERVPABLB-1P60509 514 aa16.28■□□□□ 0.2
CCDC88B-210ENST00000494566 ATP6V0D1P61421 351 aa16.28■□□□□ 0.2
CCDC88B-210ENST00000494566 TRAP1Q12931 704 aaKnown RBP16.28■□□□□ 0.2
CCDC88B-210ENST00000494566 ANKFN1Q8N957 763 aa16.28■□□□□ 0.2
CCDC88B-210ENST00000494566 CLHC1Q8NHS4 586 aa16.28■□□□□ 0.2
CCDC88B-210ENST00000494566 FIG4Q92562 907 aa16.28■□□□□ 0.2
CCDC88B-210ENST00000494566 PLD4Q96BZ4 506 aa16.28■□□□□ 0.2
CCDC88B-210ENST00000494566 CAPNS2Q96L46 248 aa16.28■□□□□ 0.2
CCDC88B-210ENST00000494566 FEM1AQ9BSK4 669 aa16.28■□□□□ 0.2
CCDC88B-210ENST00000494566 CHID1Q9BWS9 393 aa16.28■□□□□ 0.2
CCDC88B-210ENST00000494566 ZNF334Q9HCZ1 680 aaPredicted RBP16.28■□□□□ 0.2
CCDC88B-210ENST00000494566 PRDM8Q9NQV8 689 aa16.28■□□□□ 0.2
CCDC88B-210ENST00000494566 SELENONQ9NZV5 590 aa16.28■□□□□ 0.2
CCDC88B-210ENST00000494566 MYO7AQ13402 2215 aa16.27■□□□□ 0.2
CCDC88B-210ENST00000494566 ZBBXA8MT70 800 aa16.27■□□□□ 0.2
CCDC88B-210ENST00000494566 E2F3O00716 465 aa16.27■□□□□ 0.2
CCDC88B-210ENST00000494566 ACOX3O15254 700 aa16.27■□□□□ 0.2
CCDC88B-210ENST00000494566 BMP2P12643 396 aa16.27■□□□□ 0.2
CCDC88B-210ENST00000494566 HOXD10P28358 340 aa16.27■□□□□ 0.2
CCDC88B-210ENST00000494566 IL12AP29459 219 aa16.27■□□□□ 0.2
CCDC88B-210ENST00000494566 GDF5P43026 501 aa16.27■□□□□ 0.2
CCDC88B-210ENST00000494566 RPS9P46781 194 aaKnown RBP16.27■□□□□ 0.2
CCDC88B-210ENST00000494566 TTPAP49638 278 aa16.27■□□□□ 0.2
CCDC88B-210ENST00000494566 NOGQ13253 232 aa16.27■□□□□ 0.2
CCDC88B-210ENST00000494566 ITGADQ13349 1161 aa16.27■□□□□ 0.2
CCDC88B-210ENST00000494566 TPGS1Q6ZTW0 290 aa16.27■□□□□ 0.2
CCDC88B-210ENST00000494566 TMEM126BQ8IUX1 230 aa16.27■□□□□ 0.2
CCDC88B-210ENST00000494566 NKAPQ8N5F7 415 aaKnown RBP16.27■□□□□ 0.2
CCDC88B-210ENST00000494566 IGSF21Q96ID5 467 aa16.27■□□□□ 0.2
CCDC88B-210ENST00000494566 MRPL9Q9BYD2 267 aaKnown RBP16.27■□□□□ 0.2
CCDC88B-210ENST00000494566 EPS8L2Q9H6S3 715 aa16.27■□□□□ 0.2
CCDC88B-210ENST00000494566 IFT80Q9P2H3 777 aaPredicted RBP16.27■□□□□ 0.2
CCDC88B-210ENST00000494566 INVSQ9Y283 1065 aa16.27■□□□□ 0.2
CCDC88B-210ENST00000494566 PRSS21Q9Y6M0 314 aa16.27■□□□□ 0.2
CCDC88B-210ENST00000494566 DNAH14Q0VDD8 3507 aa16.27■□□□□ 0.2
CCDC88B-210ENST00000494566 SYCE1LA8MT33 242 aa16.27■□□□□ 0.19
CCDC88B-210ENST00000494566 AXIN1O15169 862 aa16.27■□□□□ 0.19
CCDC88B-210ENST00000494566 GJA1P17302 382 aa16.27■□□□□ 0.19
CCDC88B-210ENST00000494566 HOXB8P17481 243 aaPredicted RBP16.27■□□□□ 0.19
CCDC88B-210ENST00000494566 ATP4BP51164 291 aa16.27■□□□□ 0.19
CCDC88B-210ENST00000494566 SMARCB1Q12824 385 aa16.27■□□□□ 0.19
CCDC88B-210ENST00000494566 CDH18Q13634 790 aa16.27■□□□□ 0.19
CCDC88B-210ENST00000494566 ZBED5Q49AG3 693 aa16.27■□□□□ 0.19
CCDC88B-210ENST00000494566 PERM1Q5SV97 790 aa16.27■□□□□ 0.19
CCDC88B-210ENST00000494566 GALNT18Q6P9A2 607 aa16.27■□□□□ 0.19
CCDC88B-210ENST00000494566 BLOC1S3Q6QNY0 202 aa16.27■□□□□ 0.19
CCDC88B-210ENST00000494566 TMEM150AQ86TG1 271 aa16.27■□□□□ 0.19
CCDC88B-210ENST00000494566 ZNF461Q8TAF7 563 aa16.27■□□□□ 0.19
CCDC88B-210ENST00000494566 C2orf15Q8WU43 125 aaKnown RBP16.27■□□□□ 0.19
CCDC88B-210ENST00000494566 BIRC7Q96CA5 298 aa16.27■□□□□ 0.19
CCDC88B-210ENST00000494566 ASB2Q96Q27 587 aa16.27■□□□□ 0.19
CCDC88B-210ENST00000494566 APOL5Q9BWW9 433 aa16.27■□□□□ 0.19
CCDC88B-210ENST00000494566 ARIH1Q9Y4X5 557 aaPredicted RBP16.27■□□□□ 0.19
CCDC88B-210ENST00000494566 PLXNA4Q9HCM2 1894 aa16.27■□□□□ 0.19
CCDC88B-210ENST00000494566 CCDC154A6NI56 674 aa16.26■□□□□ 0.19
CCDC88B-210ENST00000494566 FFAR3O14843 346 aa16.26■□□□□ 0.19
CCDC88B-210ENST00000494566 GPR42O15529 346 aa16.26■□□□□ 0.19
CCDC88B-210ENST00000494566 TRIM16O95361 564 aa16.26■□□□□ 0.19
CCDC88B-210ENST00000494566 ESRRBO95718 433 aa16.26■□□□□ 0.19
CCDC88B-210ENST00000494566 CCT8P50990 548 aa16.26■□□□□ 0.19
CCDC88B-210ENST00000494566 CYP4F8P98187 520 aa16.26■□□□□ 0.19
CCDC88B-210ENST00000494566 GPRIN3Q6ZVF9 776 aa16.26■□□□□ 0.19
CCDC88B-210ENST00000494566 FRA10AC1Q70Z53 315 aa16.26■□□□□ 0.19
CCDC88B-210ENST00000494566 DNAJB7Q7Z6W7 309 aaPredicted RBP16.26■□□□□ 0.19
CCDC88B-210ENST00000494566 ZNF554Q86TJ5 538 aa16.26■□□□□ 0.19
CCDC88B-210ENST00000494566 TMEM125Q96AQ2 219 aa16.26■□□□□ 0.19
CCDC88B-210ENST00000494566 CENPNQ96H22 339 aaPredicted RBP16.26■□□□□ 0.19
CCDC88B-210ENST00000494566 CDK5RAP1Q96SZ6 601 aaKnown RBP16.26■□□□□ 0.19
CCDC88B-210ENST00000494566 C17orf80Q9BSJ5 609 aa16.26■□□□□ 0.19
CCDC88B-210ENST00000494566 CIPCQ9C0C6 399 aa16.26■□□□□ 0.19
CCDC88B-210ENST00000494566 CWH43Q9H720 699 aa16.26■□□□□ 0.19
CCDC88B-210ENST00000494566 SLC52A3Q9NQ40 469 aa16.26■□□□□ 0.19
CCDC88B-210ENST00000494566 RIMKLBQ9ULI2 386 aa16.26■□□□□ 0.19
CCDC88B-210ENST00000494566 PKP3Q9Y446 797 aa16.26■□□□□ 0.19
CCDC88B-210ENST00000494566 SLC30A1Q9Y6M5 507 aa16.26■□□□□ 0.19
CCDC88B-210ENST00000494566 NRG2O14511 850 aaPredicted RBP16.26■□□□□ 0.19
CCDC88B-210ENST00000494566 CAPN1P07384 714 aa16.26■□□□□ 0.19
CCDC88B-210ENST00000494566 FSHRP23945 695 aa16.26■□□□□ 0.19
CCDC88B-210ENST00000494566 ZFP36L2P47974 494 aaKnown RBP16.26■□□□□ 0.19
CCDC88B-210ENST00000494566 MLLT10P55197 1068 aa16.26■□□□□ 0.19
CCDC88B-210ENST00000494566 CYBRD1Q53TN4 286 aa16.26■□□□□ 0.19
CCDC88B-210ENST00000494566 LRRC73Q5JTD7 316 aa16.26■□□□□ 0.19
CCDC88B-210ENST00000494566 TANKQ92844 425 aa16.26■□□□□ 0.19
CCDC88B-210ENST00000494566 ROPN1LQ96C74 230 aa16.26■□□□□ 0.19
CCDC88B-210ENST00000494566 MTFMTQ96DP5 389 aaKnown RBP16.26■□□□□ 0.19
CCDC88B-210ENST00000494566 TMEM175Q9BSA9 504 aa16.26■□□□□ 0.19
CCDC88B-210ENST00000494566 HIPK3Q9H422 1215 aa16.26■□□□□ 0.19
CCDC88B-210ENST00000494566 MRPL40Q9NQ50 206 aaKnown RBP16.26■□□□□ 0.19
CCDC88B-210ENST00000494566 PFDN4Q9NQP4 134 aa16.26■□□□□ 0.19
CCDC88B-210ENST00000494566 COMMD8Q9NX08 183 aa16.26■□□□□ 0.19
CCDC88B-210ENST00000494566 SMPD3Q9NY59 655 aaPredicted RBP16.26■□□□□ 0.19
CCDC88B-210ENST00000494566 IL17CQ9P0M4 197 aa16.26■□□□□ 0.19
CCDC88B-210ENST00000494566 AFF4Q9UHB7 1163 aaKnown RBP16.26■□□□□ 0.19
CCDC88B-210ENST00000494566 ANAPC2Q9UJX6 822 aa16.26■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms