RNA–Protein interactions for RNA: ENST00000494334.1

COL1A1-208, Transcript of collagen type I alpha 1 chain, humanhuman

TSL 2

Gene COL1A1, Length 396 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A1-208ENST00000494334 BIRC8Q96P09 236 aa13.26□□□□□ -0.29
COL1A1-208ENST00000494334 SLC38A3Q99624 504 aa13.26□□□□□ -0.29
COL1A1-208ENST00000494334 CARD6Q9BX69 1037 aa13.26□□□□□ -0.29
COL1A1-208ENST00000494334 OR52A5Q9H2C5 316 aa13.26□□□□□ -0.29
COL1A1-208ENST00000494334 STN1Q9H668 368 aaKnown RBP13.26□□□□□ -0.29
COL1A1-208ENST00000494334 IARS2Q9NSE4 1012 aaKnown RBP13.26□□□□□ -0.29
COL1A1-208ENST00000494334 POT1Q9NUX5 634 aa13.26□□□□□ -0.29
COL1A1-208ENST00000494334 DMGDHQ9UI17 866 aaKnown RBP13.26□□□□□ -0.29
COL1A1-208ENST00000494334 ANGPTL2Q9UKU9 493 aa13.26□□□□□ -0.29
COL1A1-208ENST00000494334 CLCA2Q9UQC9 943 aa13.26□□□□□ -0.29
COL1A1-208ENST00000494334 CRYL1Q9Y2S2 319 aa13.26□□□□□ -0.29
COL1A1-208ENST00000494334 IGHV1OR21-1A0A087WYE8 117 aa13.25□□□□□ -0.29
COL1A1-208ENST00000494334 SLC5A10A0PJK1 596 aa13.25□□□□□ -0.29
COL1A1-208ENST00000494334 F8W8V4 182 aa13.25□□□□□ -0.29
COL1A1-208ENST00000494334 LIN7AO14910 233 aaPredicted RBP13.25□□□□□ -0.29
COL1A1-208ENST00000494334 TCEA3O75764 348 aa13.25□□□□□ -0.29
COL1A1-208ENST00000494334 ERVK-10P10266 1014 aa13.25□□□□□ -0.29
COL1A1-208ENST00000494334 CD1CP29017 333 aa13.25□□□□□ -0.29
COL1A1-208ENST00000494334 FMO4P31512 558 aa13.25□□□□□ -0.29
COL1A1-208ENST00000494334 CCR7P32248 378 aa13.25□□□□□ -0.29
COL1A1-208ENST00000494334 SLC1A2P43004 574 aa13.25□□□□□ -0.29
COL1A1-208ENST00000494334 PREPP48147 710 aa13.25□□□□□ -0.29
COL1A1-208ENST00000494334 ADARP55265 1226 aaKnown RBP13.25□□□□□ -0.29
COL1A1-208ENST00000494334 EIF3BP55884 814 aaKnown RBP13.25□□□□□ -0.29
COL1A1-208ENST00000494334 GUCY2DQ02846 1103 aa13.25□□□□□ -0.29
COL1A1-208ENST00000494334 RPA4Q13156 261 aa13.25□□□□□ -0.29
COL1A1-208ENST00000494334 SPIDRQ14159 915 aa13.25□□□□□ -0.29
COL1A1-208ENST00000494334 BRD3Q15059 726 aa13.25□□□□□ -0.29
COL1A1-208ENST00000494334 AMZ1Q400G9 498 aa13.25□□□□□ -0.29
COL1A1-208ENST00000494334 GLE1Q53GS7 698 aaKnown RBP13.25□□□□□ -0.29
COL1A1-208ENST00000494334 RNF187Q5TA31 235 aaPredicted RBP13.25□□□□□ -0.29
COL1A1-208ENST00000494334 PTRHD1Q6GMV3 140 aaKnown RBP13.25□□□□□ -0.29
COL1A1-208ENST00000494334 CCNI2Q6ZMN8 369 aaPredicted RBP13.25□□□□□ -0.29
COL1A1-208ENST00000494334 TMEM26Q6ZUK4 368 aa13.25□□□□□ -0.29
COL1A1-208ENST00000494334 TRIM48Q8IWZ4 208 aa13.25□□□□□ -0.29
COL1A1-208ENST00000494334 ZBED8Q8IZ13 594 aa13.25□□□□□ -0.29
COL1A1-208ENST00000494334 KRT222Q8N1A0 295 aa13.25□□□□□ -0.29
COL1A1-208ENST00000494334 DCBLD1Q8N8Z6 715 aa13.25□□□□□ -0.29
COL1A1-208ENST00000494334 CXorf40BQ96DE9 158 aa13.25□□□□□ -0.29
COL1A1-208ENST00000494334 CERS2Q96G23 380 aa13.25□□□□□ -0.29
COL1A1-208ENST00000494334 RMDN2Q96LZ7 410 aa13.25□□□□□ -0.29
COL1A1-208ENST00000494334 C12orf66Q96MD2 445 aa13.25□□□□□ -0.29
COL1A1-208ENST00000494334 GFM1Q96RP9 751 aaKnown RBP13.25□□□□□ -0.29
COL1A1-208ENST00000494334 LDHAL6BQ9BYZ2 381 aaPredicted RBP13.25□□□□□ -0.29
COL1A1-208ENST00000494334 SYNDIG1Q9H7V2 258 aa13.25□□□□□ -0.29
COL1A1-208ENST00000494334 EPB41L5Q9HCM4 733 aa13.25□□□□□ -0.29
COL1A1-208ENST00000494334 SLC40A1Q9NP59 571 aa13.25□□□□□ -0.29
COL1A1-208ENST00000494334 FBXO6Q9NRD1 293 aaPredicted RBP13.25□□□□□ -0.29
COL1A1-208ENST00000494334 INTS10Q9NVR2 710 aaKnown RBP13.25□□□□□ -0.29
COL1A1-208ENST00000494334 KCNK4Q9NYG8 393 aa13.25□□□□□ -0.29
COL1A1-208ENST00000494334 GNPTGQ9UJJ9 305 aa13.25□□□□□ -0.29
COL1A1-208ENST00000494334 ATXN7L1Q9ULK2 861 aaPredicted RBP13.25□□□□□ -0.29
COL1A1-208ENST00000494334 MSRB2Q9Y3D2 182 aa13.25□□□□□ -0.29
COL1A1-208ENST00000494334 NEUROG3Q9Y4Z2 214 aa13.25□□□□□ -0.29
COL1A1-208ENST00000494334 CFAP20Q9Y6A4 193 aaKnown RBP13.25□□□□□ -0.29
COL1A1-208ENST00000494334 RP1P56715 2156 aa13.25□□□□□ -0.29
COL1A1-208ENST00000494334 ZFC3H1O60293 1989 aaKnown RBP13.25□□□□□ -0.29
COL1A1-208ENST00000494334 EIF3HO15372 352 aaKnown RBP eCLIP13.24□□□□□ -0.29
COL1A1-208ENST00000494334 ZW10O43264 779 aa13.24□□□□□ -0.29
COL1A1-208ENST00000494334 ZNF500O60304 480 aaPredicted RBP13.24□□□□□ -0.29
COL1A1-208ENST00000494334 HAUS5O94927 633 aa13.24□□□□□ -0.29
COL1A1-208ENST00000494334 SLC35G4P0C7Q5 338 aa13.24□□□□□ -0.29
COL1A1-208ENST00000494334 MTHFD1P11586 935 aaKnown RBP13.24□□□□□ -0.29
COL1A1-208ENST00000494334 PDX1P52945 283 aa13.24□□□□□ -0.29
COL1A1-208ENST00000494334 GPLD1P80108 840 aa13.24□□□□□ -0.29
COL1A1-208ENST00000494334 SQSTM1Q13501 440 aa13.24□□□□□ -0.29
COL1A1-208ENST00000494334 BOP1Q14137 746 aaKnown RBP13.24□□□□□ -0.29
COL1A1-208ENST00000494334 NKAIN2Q5VXU1 208 aa13.24□□□□□ -0.29
COL1A1-208ENST00000494334 TRMT10BQ6PF06 316 aaKnown RBP13.24□□□□□ -0.29
COL1A1-208ENST00000494334 RBM44Q6ZP01 1051 aaKnown RBP13.24□□□□□ -0.29
COL1A1-208ENST00000494334 USP53Q70EK8 1073 aa13.24□□□□□ -0.29
COL1A1-208ENST00000494334 TMPRSS9Q7Z410 1059 aa13.24□□□□□ -0.29
COL1A1-208ENST00000494334 CNTN4Q8IWV2 1026 aa13.24□□□□□ -0.29
COL1A1-208ENST00000494334 RBM12BQ8IXT5 1001 aaKnown RBP13.24□□□□□ -0.29
COL1A1-208ENST00000494334 C2CD4AQ8NCU7 369 aaPredicted RBP13.24□□□□□ -0.29
COL1A1-208ENST00000494334 PYROXD1Q8WU10 500 aa13.24□□□□□ -0.29
COL1A1-208ENST00000494334 PANX3Q96QZ0 392 aa13.24□□□□□ -0.29
COL1A1-208ENST00000494334 FAM167BQ9BTA0 163 aa13.24□□□□□ -0.29
COL1A1-208ENST00000494334 TSSK1BQ9BXA7 367 aa13.24□□□□□ -0.29
COL1A1-208ENST00000494334 TBC1D10AQ9BXI6 508 aa13.24□□□□□ -0.29
COL1A1-208ENST00000494334 UCK1Q9HA47 277 aa13.24□□□□□ -0.29
COL1A1-208ENST00000494334 SAYSD1Q9NPB0 183 aa13.24□□□□□ -0.29
COL1A1-208ENST00000494334 IMP3Q9NV31 184 aaKnown RBP13.24□□□□□ -0.29
COL1A1-208ENST00000494334 FBXO5Q9UKT4 447 aa13.24□□□□□ -0.29
COL1A1-208ENST00000494334 VPS9D1Q9Y2B5 631 aa13.24□□□□□ -0.29
COL1A1-208ENST00000494334 PCDHB1Q9Y5F3 818 aa13.24□□□□□ -0.29
COL1A1-208ENST00000494334 BPTFQ12830 3046 aa13.24□□□□□ -0.29
COL1A1-208ENST00000494334 LILRA5A6NI73 299 aa13.23□□□□□ -0.29
COL1A1-208ENST00000494334 D6RAR5 112 aa13.23□□□□□ -0.29
COL1A1-208ENST00000494334 IFRD1O00458 451 aaPredicted RBP13.23□□□□□ -0.29
COL1A1-208ENST00000494334 CSO75390 466 aaKnown RBP13.23□□□□□ -0.29
COL1A1-208ENST00000494334 GPC4O75487 556 aa13.23□□□□□ -0.29
COL1A1-208ENST00000494334 CPNE6O95741 557 aa13.23□□□□□ -0.29
COL1A1-208ENST00000494334 ESR1P03372 595 aa13.23□□□□□ -0.29
COL1A1-208ENST00000494334 PKMP14618 531 aaKnown RBP13.23□□□□□ -0.29
COL1A1-208ENST00000494334 AOAHP28039 575 aa13.23□□□□□ -0.29
COL1A1-208ENST00000494334 LEPRP48357 1165 aaKnown RBP13.23□□□□□ -0.29
COL1A1-208ENST00000494334 CD151P48509 253 aa13.23□□□□□ -0.29
COL1A1-208ENST00000494334 CARSP49589 748 aaKnown RBP13.23□□□□□ -0.29
COL1A1-208ENST00000494334 EPHA4P54764 986 aa13.23□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms