RNA–Protein interactions for RNA: ENST00000493341.1

VPS13A-212, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,001 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-212ENST00000493341 PLA2G7Q13093 441 aa4.55□□□□□ -1.68
VPS13A-212ENST00000493341 FOXE3Q13461 319 aa4.55□□□□□ -1.68
VPS13A-212ENST00000493341 TNK1Q13470 666 aa4.55□□□□□ -1.68
VPS13A-212ENST00000493341 TCTE1Q5JU00 501 aa4.55□□□□□ -1.68
VPS13A-212ENST00000493341 NHLRC1Q6VVB1 395 aa4.55□□□□□ -1.68
VPS13A-212ENST00000493341 PCDH20Q8N6Y1 951 aaKnown RBP4.55□□□□□ -1.68
VPS13A-212ENST00000493341 ZBTB44Q8NCP5 570 aa4.55□□□□□ -1.68
VPS13A-212ENST00000493341 BCL2L2Q92843 193 aaPredicted RBP4.55□□□□□ -1.68
VPS13A-212ENST00000493341 SARAFQ96BY9 339 aa4.55□□□□□ -1.68
VPS13A-212ENST00000493341 FAM111AQ96PZ2 611 aa4.55□□□□□ -1.68
VPS13A-212ENST00000493341 MAP6D1Q9H9H5 199 aa4.55□□□□□ -1.68
VPS13A-212ENST00000493341 OSER1Q9NX31 292 aa4.55□□□□□ -1.68
VPS13A-212ENST00000493341 TDRKHQ9Y2W6 561 aaKnown RBP4.55□□□□□ -1.68
VPS13A-212ENST00000493341 WDR17Q8IZU2 1322 aa4.54□□□□□ -1.68
VPS13A-212ENST00000493341 FEZF1A0PJY2 475 aa4.54□□□□□ -1.68
VPS13A-212ENST00000493341 SDR42E2A6NKP2 422 aa4.54□□□□□ -1.68
VPS13A-212ENST00000493341 J3KR12 359 aa4.54□□□□□ -1.68
VPS13A-212ENST00000493341 CTDSPLO15194 276 aa4.54□□□□□ -1.68
VPS13A-212ENST00000493341 KCNN4O15554 427 aa4.54□□□□□ -1.68
VPS13A-212ENST00000493341 FGBP02675 491 aa4.54□□□□□ -1.68
VPS13A-212ENST00000493341 SBK2P0C263 348 aa4.54□□□□□ -1.68
VPS13A-212ENST00000493341 VCLP18206 1134 aa4.54□□□□□ -1.68
VPS13A-212ENST00000493341 CCNA2P20248 432 aa4.54□□□□□ -1.68
VPS13A-212ENST00000493341 CD22P20273 847 aa4.54□□□□□ -1.68
VPS13A-212ENST00000493341 IL10P22301 178 aa4.54□□□□□ -1.68
VPS13A-212ENST00000493341 MPZP25189 248 aa4.54□□□□□ -1.68
VPS13A-212ENST00000493341 PSMB4P28070 264 aa4.54□□□□□ -1.68
VPS13A-212ENST00000493341 ALDH7A1P49419 539 aaKnown RBP4.54□□□□□ -1.68
VPS13A-212ENST00000493341 GPC3P51654 580 aa4.54□□□□□ -1.68
VPS13A-212ENST00000493341 ATXN3P54252 364 aaPredicted RBP4.54□□□□□ -1.68
VPS13A-212ENST00000493341 HTD2P86397 168 aa4.54□□□□□ -1.68
VPS13A-212ENST00000493341 FOLH1Q04609 750 aa4.54□□□□□ -1.68
VPS13A-212ENST00000493341 DECR1Q16698 335 aa4.54□□□□□ -1.68
VPS13A-212ENST00000493341 AARDQ4LEZ3 155 aa4.54□□□□□ -1.68
VPS13A-212ENST00000493341 FRG2Q64ET8 278 aa4.54□□□□□ -1.68
VPS13A-212ENST00000493341 MIS18BP1Q6P0N0 1132 aa4.54□□□□□ -1.68
VPS13A-212ENST00000493341 OLFM4Q6UX06 510 aa4.54□□□□□ -1.68
VPS13A-212ENST00000493341 MIER3Q7Z3K6 550 aa4.54□□□□□ -1.68
VPS13A-212ENST00000493341 PIGWQ7Z7B1 504 aa4.54□□□□□ -1.68
VPS13A-212ENST00000493341 KRTAP1-3Q8IUG1 177 aa4.54□□□□□ -1.68
VPS13A-212ENST00000493341 TMEM174Q8WUU8 243 aa4.54□□□□□ -1.68
VPS13A-212ENST00000493341 UBLCP1Q8WVY7 318 aaPredicted RBP4.54□□□□□ -1.68
VPS13A-212ENST00000493341 RIT1Q92963 219 aa4.54□□□□□ -1.68
VPS13A-212ENST00000493341 RHBDF1Q96CC6 855 aa4.54□□□□□ -1.68
VPS13A-212ENST00000493341 SPATA33Q96N06 139 aa4.54□□□□□ -1.68
VPS13A-212ENST00000493341 SPATA13Q96N96 652 aa4.54□□□□□ -1.68
VPS13A-212ENST00000493341 DUSP26Q9BV47 211 aa4.54□□□□□ -1.68
VPS13A-212ENST00000493341 LSG1Q9H089 658 aaKnown RBP4.54□□□□□ -1.68
VPS13A-212ENST00000493341 SEMA6AQ9H2E6 1030 aa4.54□□□□□ -1.68
VPS13A-212ENST00000493341 DPAGT1Q9H3H5 408 aa4.54□□□□□ -1.68
VPS13A-212ENST00000493341 SRD5A3Q9H8P0 318 aa4.54□□□□□ -1.68
VPS13A-212ENST00000493341 PDGFCQ9NRA1 345 aa4.54□□□□□ -1.68
VPS13A-212ENST00000493341 DNAJC11Q9NVH1 559 aa4.54□□□□□ -1.68
VPS13A-212ENST00000493341 FBXL2Q9UKC9 423 aa4.54□□□□□ -1.68
VPS13A-212ENST00000493341 TLK1Q9UKI8 766 aa4.54□□□□□ -1.68
VPS13A-212ENST00000493341 PAM16Q9Y3D7 125 aa4.54□□□□□ -1.68
VPS13A-212ENST00000493341 STRAPQ9Y3F4 350 aaKnown RBP4.54□□□□□ -1.68
VPS13A-212ENST00000493341 AP1M2Q9Y6Q5 423 aa4.54□□□□□ -1.68
VPS13A-212ENST00000493341 A0A1W2PPQ1 181 aa4.53□□□□□ -1.68
VPS13A-212ENST00000493341 TIMM23O14925 209 aa4.53□□□□□ -1.68
VPS13A-212ENST00000493341 ANKRD28O15084 1053 aa4.53□□□□□ -1.68
VPS13A-212ENST00000493341 PPIP5K2O43314 1243 aa4.53□□□□□ -1.68
VPS13A-212ENST00000493341 FCGR3BO75015 233 aa4.53□□□□□ -1.68
VPS13A-212ENST00000493341 SOCS5O75159 536 aa4.53□□□□□ -1.68
VPS13A-212ENST00000493341 FERP16591 822 aa4.53□□□□□ -1.68
VPS13A-212ENST00000493341 TIA1P31483 386 aaKnown RBP eCLIP4.53□□□□□ -1.68
VPS13A-212ENST00000493341 GMPSP49915 693 aaPredicted RBP4.53□□□□□ -1.68
VPS13A-212ENST00000493341 MAPK12P53778 367 aa4.53□□□□□ -1.68
VPS13A-212ENST00000493341 P2RX3P56373 397 aa4.53□□□□□ -1.68
VPS13A-212ENST00000493341 ZNF91Q05481 1191 aa4.53□□□□□ -1.68
VPS13A-212ENST00000493341 TRA2AQ13595 282 aaKnown RBP eCLIP4.53□□□□□ -1.68
VPS13A-212ENST00000493341 EFNB3Q15768 340 aa4.53□□□□□ -1.68
VPS13A-212ENST00000493341 ZNF789Q5FWF6 425 aa4.53□□□□□ -1.68
VPS13A-212ENST00000493341 TXNRD3NBQ6F5E7 133 aa4.53□□□□□ -1.68
VPS13A-212ENST00000493341 MFSD12Q6NUT3 480 aa4.53□□□□□ -1.68
VPS13A-212ENST00000493341 PODNL1Q6PEZ8 512 aa4.53□□□□□ -1.68
VPS13A-212ENST00000493341 KCTD18Q6PI47 426 aaPredicted RBP4.53□□□□□ -1.68
VPS13A-212ENST00000493341 MON1BQ7L1V2 547 aa4.53□□□□□ -1.68
VPS13A-212ENST00000493341 ARHGEF25Q86VW2 580 aa4.53□□□□□ -1.68
VPS13A-212ENST00000493341 NRROSQ86YC3 692 aa4.53□□□□□ -1.68
VPS13A-212ENST00000493341 SERPINA12Q8IW75 414 aa4.53□□□□□ -1.68
VPS13A-212ENST00000493341 SLC5A8Q8N695 610 aa4.53□□□□□ -1.68
VPS13A-212ENST00000493341 MIGA1Q8NAN2 632 aa4.53□□□□□ -1.68
VPS13A-212ENST00000493341 SLC38A9Q8NBW4 561 aa4.53□□□□□ -1.68
VPS13A-212ENST00000493341 SLC44A5Q8NCS7 719 aa4.53□□□□□ -1.68
VPS13A-212ENST00000493341 ENGASEQ8NFI3 743 aa4.53□□□□□ -1.68
VPS13A-212ENST00000493341 B4GALNT2Q8NHY0 566 aa4.53□□□□□ -1.68
VPS13A-212ENST00000493341 SYN2Q92777 582 aaPredicted RBP4.53□□□□□ -1.68
VPS13A-212ENST00000493341 SLC25A28Q96A46 364 aa4.53□□□□□ -1.68
VPS13A-212ENST00000493341 CENPTQ96BT3 561 aa4.53□□□□□ -1.68
VPS13A-212ENST00000493341 AP2M1Q96CW1 435 aa4.53□□□□□ -1.68
VPS13A-212ENST00000493341 RNPEPL1Q9HAU8 725 aa4.53□□□□□ -1.68
VPS13A-212ENST00000493341 CLK4Q9HAZ1 481 aaKnown RBP4.53□□□□□ -1.68
VPS13A-212ENST00000493341 SYTL2Q9HCH5 934 aa4.53□□□□□ -1.68
VPS13A-212ENST00000493341 TAS2R3Q9NYW6 316 aa4.53□□□□□ -1.68
VPS13A-212ENST00000493341 SPG21Q9NZD8 308 aa4.53□□□□□ -1.68
VPS13A-212ENST00000493341 FLRT1Q9NZU1 646 aa4.53□□□□□ -1.68
VPS13A-212ENST00000493341 RAPGEFL1Q9UHV5 662 aa4.53□□□□□ -1.68
VPS13A-212ENST00000493341 TINAGQ9UJW2 476 aa4.53□□□□□ -1.68
VPS13A-212ENST00000493341 ITM2BQ9Y287 266 aa4.53□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 70.5 ms