RNA–Protein interactions for RNA: ENST00000490557.1

HMGB1P38-201, Transcript of high mobility group box 1 pseudogene 38, humanhuman

BASIC

Gene HMGB1P38, Length 577 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P38-201ENST00000490557 VPS33BQ9H267 617 aa4.62□□□□□ -1.67
HMGB1P38-201ENST00000490557 MMP27Q9H306 513 aa4.62□□□□□ -1.67
HMGB1P38-201ENST00000490557 TFB2MQ9H5Q4 396 aaKnown RBP4.62□□□□□ -1.67
HMGB1P38-201ENST00000490557 PDE7BQ9NP56 450 aa4.62□□□□□ -1.67
HMGB1P38-201ENST00000490557 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP4.62□□□□□ -1.67
HMGB1P38-201ENST00000490557 TXLNGQ9NUQ3 528 aa4.62□□□□□ -1.67
HMGB1P38-201ENST00000490557 PTTG2Q9NZH5 202 aa4.62□□□□□ -1.67
HMGB1P38-201ENST00000490557 A0A1W2PPI3 338 aa4.61□□□□□ -1.67
HMGB1P38-201ENST00000490557 MED19A0JLT2 244 aaPredicted RBP4.61□□□□□ -1.67
HMGB1P38-201ENST00000490557 SLC22A3O75751 556 aa4.61□□□□□ -1.67
HMGB1P38-201ENST00000490557 IGKV3-20P01619 116 aa4.61□□□□□ -1.67
HMGB1P38-201ENST00000490557 TPOP07202 933 aa4.61□□□□□ -1.67
HMGB1P38-201ENST00000490557 CKMT2P17540 419 aa4.61□□□□□ -1.67
HMGB1P38-201ENST00000490557 MMP15P51511 669 aa4.61□□□□□ -1.67
HMGB1P38-201ENST00000490557 PSMC6P62333 389 aa4.61□□□□□ -1.67
HMGB1P38-201ENST00000490557 MELKQ14680 651 aa4.61□□□□□ -1.67
HMGB1P38-201ENST00000490557 KIR2DS3Q14952 304 aa4.61□□□□□ -1.67
HMGB1P38-201ENST00000490557 PCLAFQ15004 111 aa4.61□□□□□ -1.67
HMGB1P38-201ENST00000490557 MFSD4BQ5TF39 518 aa4.61□□□□□ -1.67
HMGB1P38-201ENST00000490557 LDB1Q86U70 411 aaPredicted RBP4.61□□□□□ -1.67
HMGB1P38-201ENST00000490557 DNAAF5Q86Y56 855 aa4.61□□□□□ -1.67
HMGB1P38-201ENST00000490557 LINC00346Q8IVM7 164 aa4.61□□□□□ -1.67
HMGB1P38-201ENST00000490557 FBXO39Q8N4B4 442 aa4.61□□□□□ -1.67
HMGB1P38-201ENST00000490557 CCDC89Q8N998 374 aa4.61□□□□□ -1.67
HMGB1P38-201ENST00000490557 ZNF582Q96NG8 517 aaPredicted RBP4.61□□□□□ -1.67
HMGB1P38-201ENST00000490557 MOV10L1Q9BXT6 1211 aaKnown RBP4.61□□□□□ -1.67
HMGB1P38-201ENST00000490557 MRPL1Q9BYD6 325 aaKnown RBP4.61□□□□□ -1.67
HMGB1P38-201ENST00000490557 APOBEC3GQ9HC16 384 aaKnown RBP4.61□□□□□ -1.67
HMGB1P38-201ENST00000490557 STK26Q9P289 416 aa4.61□□□□□ -1.67
HMGB1P38-201ENST00000490557 A0A0B4J293 547 aa4.6□□□□□ -1.67
HMGB1P38-201ENST00000490557 ELOVL7A1L3X0 281 aa4.6□□□□□ -1.67
HMGB1P38-201ENST00000490557 GLOD5A6NK44 160 aa4.6□□□□□ -1.67
HMGB1P38-201ENST00000490557 MAGEB17A8MXT2 336 aa4.6□□□□□ -1.67
HMGB1P38-201ENST00000490557 FAM72CH0Y354 149 aa4.6□□□□□ -1.67
HMGB1P38-201ENST00000490557 CLIC2O15247 247 aa4.6□□□□□ -1.67
HMGB1P38-201ENST00000490557 LINC01565O15544 149 aa4.6□□□□□ -1.67
HMGB1P38-201ENST00000490557 TSPAN1O60635 241 aa4.6□□□□□ -1.67
HMGB1P38-201ENST00000490557 WISP2O76076 250 aa4.6□□□□□ -1.67
HMGB1P38-201ENST00000490557 BCL10O95999 233 aa4.6□□□□□ -1.67
HMGB1P38-201ENST00000490557 NR3C1P04150 777 aa4.6□□□□□ -1.67
HMGB1P38-201ENST00000490557 UMODP07911 640 aa4.6□□□□□ -1.67
HMGB1P38-201ENST00000490557 GNAZP19086 355 aa4.6□□□□□ -1.67
HMGB1P38-201ENST00000490557 TRIM21P19474 475 aaKnown RBP4.6□□□□□ -1.67
HMGB1P38-201ENST00000490557 CALD1Q05682 793 aaKnown RBP4.6□□□□□ -1.67
HMGB1P38-201ENST00000490557 DMP1Q13316 513 aaPredicted RBP4.6□□□□□ -1.67
HMGB1P38-201ENST00000490557 FAM72AQ5TYM5 149 aa4.6□□□□□ -1.67
HMGB1P38-201ENST00000490557 GPR139Q6DWJ6 353 aa4.6□□□□□ -1.67
HMGB1P38-201ENST00000490557 FAM109BQ6ICB4 259 aaPredicted RBP4.6□□□□□ -1.67
HMGB1P38-201ENST00000490557 FAM72DQ6L9T8 149 aa4.6□□□□□ -1.67
HMGB1P38-201ENST00000490557 SMIM29Q86T20 159 aa4.6□□□□□ -1.67
HMGB1P38-201ENST00000490557 FAM72BQ86X60 149 aa4.6□□□□□ -1.67
HMGB1P38-201ENST00000490557 GPALPP1Q8IXQ4 340 aa4.6□□□□□ -1.67
HMGB1P38-201ENST00000490557 MINDY1Q8N5J2 469 aa4.6□□□□□ -1.67
HMGB1P38-201ENST00000490557 CNBD1Q8NA66 436 aa4.6□□□□□ -1.67
HMGB1P38-201ENST00000490557 WDR20Q8TBZ3 569 aa4.6□□□□□ -1.67
HMGB1P38-201ENST00000490557 LPGAT1Q92604 370 aa4.6□□□□□ -1.67
HMGB1P38-201ENST00000490557 ALG14Q96F25 216 aa4.6□□□□□ -1.67
HMGB1P38-201ENST00000490557 HES6Q96HZ4 224 aa4.6□□□□□ -1.67
HMGB1P38-201ENST00000490557 SLX1AQ9BQ83 275 aa4.6□□□□□ -1.67
HMGB1P38-201ENST00000490557 APOL6Q9BWW8 343 aa4.6□□□□□ -1.67
HMGB1P38-201ENST00000490557 BICC1Q9H694 974 aaKnown RBP4.6□□□□□ -1.67
HMGB1P38-201ENST00000490557 ZBTB20Q9HC78 741 aaPredicted RBP4.6□□□□□ -1.67
HMGB1P38-201ENST00000490557 OLFML3Q9NRN5 406 aa4.6□□□□□ -1.67
HMGB1P38-201ENST00000490557 ECHDC1Q9NTX5 307 aa4.6□□□□□ -1.67
HMGB1P38-201ENST00000490557 WSB2Q9NYS7 404 aaPredicted RBP4.6□□□□□ -1.67
HMGB1P38-201ENST00000490557 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP4.6□□□□□ -1.67
HMGB1P38-201ENST00000490557 ADAMDEC1O15204 470 aa4.59□□□□□ -1.67
HMGB1P38-201ENST00000490557 SYNCRIPO60506 623 aaKnown RBP4.59□□□□□ -1.67
HMGB1P38-201ENST00000490557 NR2C2P49116 596 aa4.59□□□□□ -1.67
HMGB1P38-201ENST00000490557 LIG4P49917 911 aa4.59□□□□□ -1.67
HMGB1P38-201ENST00000490557 MFAP5Q13361 173 aa4.59□□□□□ -1.67
HMGB1P38-201ENST00000490557 GRAPQ13588 217 aa4.59□□□□□ -1.67
HMGB1P38-201ENST00000490557 BMP2KLQ5H9B9 411 aa4.59□□□□□ -1.67
HMGB1P38-201ENST00000490557 SLC27A1Q6PCB7 646 aa4.59□□□□□ -1.67
HMGB1P38-201ENST00000490557 FAM43BQ6ZT52 329 aaPredicted RBP4.59□□□□□ -1.67
HMGB1P38-201ENST00000490557 ENOSF1Q7L5Y1 443 aa4.59□□□□□ -1.67
HMGB1P38-201ENST00000490557 CIARTQ8N365 385 aaPredicted RBP4.59□□□□□ -1.67
HMGB1P38-201ENST00000490557 GUF1Q8N442 669 aaKnown RBP4.59□□□□□ -1.67
HMGB1P38-201ENST00000490557 SYT2Q8N9I0 419 aaPredicted RBP4.59□□□□□ -1.67
HMGB1P38-201ENST00000490557 PPFIBP2Q8ND30 876 aa4.59□□□□□ -1.67
HMGB1P38-201ENST00000490557 ZNF473Q8WTR7 871 aaKnown RBP4.59□□□□□ -1.67
HMGB1P38-201ENST00000490557 TM9SF4Q92544 642 aa4.59□□□□□ -1.67
HMGB1P38-201ENST00000490557 DAZLQ92904 295 aaKnown RBP4.59□□□□□ -1.67
HMGB1P38-201ENST00000490557 PTERQ96BW5 349 aa4.59□□□□□ -1.67
HMGB1P38-201ENST00000490557 NEK1Q96PY6 1258 aa4.59□□□□□ -1.67
HMGB1P38-201ENST00000490557 OR6C1Q96RD1 312 aa4.59□□□□□ -1.67
HMGB1P38-201ENST00000490557 SLC22A12Q96S37 553 aa4.59□□□□□ -1.67
HMGB1P38-201ENST00000490557 FNDC11Q9BVV2 318 aa4.59□□□□□ -1.67
HMGB1P38-201ENST00000490557 SLA2Q9H6Q3 261 aa4.59□□□□□ -1.67
HMGB1P38-201ENST00000490557 SDF2L1Q9HCN8 221 aa4.59□□□□□ -1.67
HMGB1P38-201ENST00000490557 GRIP1Q9Y3R0 1128 aa4.59□□□□□ -1.67
HMGB1P38-201ENST00000490557 SPIN1Q9Y657 262 aaPredicted RBP4.59□□□□□ -1.67
HMGB1P38-201ENST00000490557 GPR75-ASB3A0A0A6YYF3 556 aa4.58□□□□□ -1.68
HMGB1P38-201ENST00000490557 PRSS51A0A1B0GVH4 220 aa4.58□□□□□ -1.68
HMGB1P38-201ENST00000490557 C5orf60A6NFR6 353 aa4.58□□□□□ -1.68
HMGB1P38-201ENST00000490557 PRKNO60260 465 aaPredicted RBP4.58□□□□□ -1.68
HMGB1P38-201ENST00000490557 GCNT3O95395 438 aa4.58□□□□□ -1.68
HMGB1P38-201ENST00000490557 MSH3P20585 1137 aa4.58□□□□□ -1.68
HMGB1P38-201ENST00000490557 ANOS1P23352 680 aa4.58□□□□□ -1.68
HMGB1P38-201ENST00000490557 EPHA2P29317 976 aa4.58□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms