RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 ZFYVE16Q7Z3T8 1539 aa5.65□□□□□ -1.5
USP40-213ENST00000483216 IGLV5-45A0A087WSX0 123 aa5.65□□□□□ -1.5
USP40-213ENST00000483216 AP3D1O14617 1153 aa5.65□□□□□ -1.5
USP40-213ENST00000483216 DVL1O14640 695 aa5.65□□□□□ -1.5
USP40-213ENST00000483216 ZNF500O60304 480 aaPredicted RBP5.65□□□□□ -1.5
USP40-213ENST00000483216 DOK2O60496 412 aa5.65□□□□□ -1.5
USP40-213ENST00000483216 TPPPO94811 219 aa5.65□□□□□ -1.5
USP40-213ENST00000483216 SP1P08047 785 aa5.65□□□□□ -1.5
USP40-213ENST00000483216 SELLP14151 372 aa5.65□□□□□ -1.5
USP40-213ENST00000483216 DVL1P1P54792 670 aaPredicted RBP5.65□□□□□ -1.5
USP40-213ENST00000483216 EIF5P55010 431 aaKnown RBP5.65□□□□□ -1.5
USP40-213ENST00000483216 NAP1L1P55209 391 aaKnown RBP5.65□□□□□ -1.5
USP40-213ENST00000483216 NUCB2P80303 420 aa5.65□□□□□ -1.5
USP40-213ENST00000483216 ACVR2BQ13705 512 aa5.65□□□□□ -1.5
USP40-213ENST00000483216 ARID3BQ8IVW6 561 aaPredicted RBP5.65□□□□□ -1.5
USP40-213ENST00000483216 CEP97Q8IW35 865 aa5.65□□□□□ -1.5
USP40-213ENST00000483216 RDM1Q8NG50 284 aa5.65□□□□□ -1.5
USP40-213ENST00000483216 SNX21Q969T3 373 aa5.65□□□□□ -1.5
USP40-213ENST00000483216 ABHD8Q96I13 439 aa5.65□□□□□ -1.5
USP40-213ENST00000483216 DACH2Q96NX9 599 aa5.65□□□□□ -1.5
USP40-213ENST00000483216 SMARCAD1Q9H4L7 1026 aa5.65□□□□□ -1.5
USP40-213ENST00000483216 ZNF334Q9HCZ1 680 aaPredicted RBP5.65□□□□□ -1.5
USP40-213ENST00000483216 RRAGDQ9NQL2 400 aaPredicted RBP5.65□□□□□ -1.5
USP40-213ENST00000483216 EXO1Q9UQ84 846 aaKnown RBP5.65□□□□□ -1.5
USP40-213ENST00000483216 ABCA9Q8IUA7 1624 aa5.65□□□□□ -1.51
USP40-213ENST00000483216 PARD3Q8TEW0 1356 aa5.65□□□□□ -1.51
USP40-213ENST00000483216 BLMP54132 1417 aaPredicted RBP5.65□□□□□ -1.51
USP40-213ENST00000483216 TRAPPC8Q9Y2L5 1435 aa5.65□□□□□ -1.51
USP40-213ENST00000483216 ATP10AO60312 1499 aa5.64□□□□□ -1.51
USP40-213ENST00000483216 PLA2R1Q13018 1463 aa5.64□□□□□ -1.51
USP40-213ENST00000483216 LAMC1P11047 1609 aa5.64□□□□□ -1.51
USP40-213ENST00000483216 EIF2AK4Q9P2K8 1649 aaKnown RBP5.64□□□□□ -1.51
USP40-213ENST00000483216 C5orf60A6NFR6 353 aa5.64□□□□□ -1.51
USP40-213ENST00000483216 TMEM178BH3BS89 294 aa5.64□□□□□ -1.51
USP40-213ENST00000483216 VILLO15195 856 aa5.64□□□□□ -1.51
USP40-213ENST00000483216 WISP2O76076 250 aa5.64□□□□□ -1.51
USP40-213ENST00000483216 PDE9AO76083 593 aa5.64□□□□□ -1.51
USP40-213ENST00000483216 CSF2RAP15509 400 aa5.64□□□□□ -1.51
USP40-213ENST00000483216 NR2F2P24468 414 aa5.64□□□□□ -1.51
USP40-213ENST00000483216 MAPRE1Q15691 268 aaKnown RBP5.64□□□□□ -1.51
USP40-213ENST00000483216 HYIQ5T013 277 aa5.64□□□□□ -1.51
USP40-213ENST00000483216 SASS6Q6UVJ0 657 aa5.64□□□□□ -1.51
USP40-213ENST00000483216 ZNF534Q76KX8 674 aa5.64□□□□□ -1.51
USP40-213ENST00000483216 MARK2Q7KZI7 788 aaKnown RBP5.64□□□□□ -1.51
USP40-213ENST00000483216 ZNF329Q86UD4 541 aa5.64□□□□□ -1.51
USP40-213ENST00000483216 MCEMP1Q8IX19 187 aa5.64□□□□□ -1.51
USP40-213ENST00000483216 C1orf52Q8N6N3 182 aaKnown RBP5.64□□□□□ -1.51
USP40-213ENST00000483216 FAM184AQ8NB25 1140 aa5.64□□□□□ -1.51
USP40-213ENST00000483216 SPATA3Q8NHX4 192 aa5.64□□□□□ -1.51
USP40-213ENST00000483216 SRSF8Q9BRL6 282 aaKnown RBP5.64□□□□□ -1.51
USP40-213ENST00000483216 CCDC94Q9BW85 323 aaPredicted RBP5.64□□□□□ -1.51
USP40-213ENST00000483216 RAD21L1Q9H4I0 556 aa5.64□□□□□ -1.51
USP40-213ENST00000483216 TBC1D22BQ9NU19 505 aa5.64□□□□□ -1.51
USP40-213ENST00000483216 TSPYL4Q9UJ04 414 aa5.64□□□□□ -1.51
USP40-213ENST00000483216 B3GALT5Q9Y2C3 310 aa5.64□□□□□ -1.51
USP40-213ENST00000483216 INO80Q9ULG1 1556 aaPredicted RBP5.63□□□□□ -1.51
USP40-213ENST00000483216 TRPM1Q7Z4N2 1603 aa5.63□□□□□ -1.51
USP40-213ENST00000483216 PPRC1Q5VV67 1664 aaKnown RBP5.63□□□□□ -1.51
USP40-213ENST00000483216 C15orf62A8K5M9 175 aa5.63□□□□□ -1.51
USP40-213ENST00000483216 J3QR06 171 aa5.63□□□□□ -1.51
USP40-213ENST00000483216 LINC01565O15544 149 aa5.63□□□□□ -1.51
USP40-213ENST00000483216 GH2P01242 217 aa5.63□□□□□ -1.51
USP40-213ENST00000483216 PAX1P15863 534 aa5.63□□□□□ -1.51
USP40-213ENST00000483216 TMF1P82094 1093 aa5.63□□□□□ -1.51
USP40-213ENST00000483216 GAGE2BQ13066 116 aa5.63□□□□□ -1.51
USP40-213ENST00000483216 IRF3Q14653 427 aa5.63□□□□□ -1.51
USP40-213ENST00000483216 MEP1AQ16819 746 aa5.63□□□□□ -1.51
USP40-213ENST00000483216 GAGE2EQ4V326 116 aa5.63□□□□□ -1.51
USP40-213ENST00000483216 ZDHHC20Q5W0Z9 365 aa5.63□□□□□ -1.51
USP40-213ENST00000483216 FAM109BQ6ICB4 259 aaPredicted RBP5.63□□□□□ -1.51
USP40-213ENST00000483216 GAGE2AQ6NT46 116 aa5.63□□□□□ -1.51
USP40-213ENST00000483216 PLXDC2Q6UX71 529 aa5.63□□□□□ -1.51
USP40-213ENST00000483216 RPAP2Q8IXW5 612 aaPredicted RBP5.63□□□□□ -1.51
USP40-213ENST00000483216 C1orf131Q8NDD1 294 aaKnown RBP5.63□□□□□ -1.51
USP40-213ENST00000483216 RBM15BQ8NDT2 890 aaKnown RBP5.63□□□□□ -1.51
USP40-213ENST00000483216 LRRC8CQ8TDW0 803 aa5.63□□□□□ -1.51
USP40-213ENST00000483216 ALG14Q96F25 216 aa5.63□□□□□ -1.51
USP40-213ENST00000483216 UBA5Q9GZZ9 404 aa5.63□□□□□ -1.51
USP40-213ENST00000483216 PAG1Q9NWQ8 432 aa5.63□□□□□ -1.51
USP40-213ENST00000483216 FAM118AQ9NWS6 357 aa5.63□□□□□ -1.51
USP40-213ENST00000483216 GAGE2DQ9UEU5 116 aa5.63□□□□□ -1.51
USP40-213ENST00000483216 NOL7Q9UMY1 257 aaKnown RBP5.63□□□□□ -1.51
USP40-213ENST00000483216 FAF1Q9UNN5 650 aaPredicted RBP5.63□□□□□ -1.51
USP40-213ENST00000483216 KIF3AQ9Y496 699 aa5.63□□□□□ -1.51
USP40-213ENST00000483216 YIPF1Q9Y548 306 aa5.63□□□□□ -1.51
USP40-213ENST00000483216 SEC23IPQ9Y6Y8 1000 aaKnown RBP5.63□□□□□ -1.51
USP40-213ENST00000483216 SPAG9O60271 1321 aaKnown RBP5.63□□□□□ -1.51
USP40-213ENST00000483216 A2MP01023 1474 aa5.63□□□□□ -1.51
USP40-213ENST00000483216 DEPDC5O75140 1603 aa5.63□□□□□ -1.51
USP40-213ENST00000483216 A0A0G2JNG1 304 aa5.62□□□□□ -1.51
USP40-213ENST00000483216 A0A1W2PR77 199 aa5.62□□□□□ -1.51
USP40-213ENST00000483216 OR2M5A3KFT3 312 aa5.62□□□□□ -1.51
USP40-213ENST00000483216 ZBTB43O43298 467 aa5.62□□□□□ -1.51
USP40-213ENST00000483216 CTSVO60911 334 aa5.62□□□□□ -1.51
USP40-213ENST00000483216 BAG4O95429 457 aaKnown RBP5.62□□□□□ -1.51
USP40-213ENST00000483216 MBD3O95983 291 aa5.62□□□□□ -1.51
USP40-213ENST00000483216 DRG2P55039 364 aaKnown RBP5.62□□□□□ -1.51
USP40-213ENST00000483216 MRPS5P82675 430 aaKnown RBP5.62□□□□□ -1.51
USP40-213ENST00000483216 DMTNQ08495 405 aa5.62□□□□□ -1.51
USP40-213ENST00000483216 KIR2DS5Q14953 304 aa5.62□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms