RNA–Protein interactions for RNA: ENST00000460333.5

VPS13D-202, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 4,910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-202ENST00000460333 A0A1W2PQH9 124 aa6.12□□□□□ -1.43
VPS13D-202ENST00000460333 RAMP2O60895 175 aa6.12□□□□□ -1.43
VPS13D-202ENST00000460333 PAGE1O75459 146 aa6.12□□□□□ -1.43
VPS13D-202ENST00000460333 PTTG1O95997 202 aa6.12□□□□□ -1.43
VPS13D-202ENST00000460333 SERPINF2P08697 491 aa6.12□□□□□ -1.43
VPS13D-202ENST00000460333 HGFP14210 728 aa6.12□□□□□ -1.43
VPS13D-202ENST00000460333 F8A1P23610 371 aa6.12□□□□□ -1.43
VPS13D-202ENST00000460333 GDF10P55107 478 aa6.12□□□□□ -1.43
VPS13D-202ENST00000460333 ZNF177Q13360 481 aaPredicted RBP6.12□□□□□ -1.43
VPS13D-202ENST00000460333 SEMA5AQ13591 1074 aa6.12□□□□□ -1.43
VPS13D-202ENST00000460333 RAB39AQ14964 217 aa6.12□□□□□ -1.43
VPS13D-202ENST00000460333 SGO1Q5FBB7 561 aa6.12□□□□□ -1.43
VPS13D-202ENST00000460333 TPRG1LQ5T0D9 272 aa6.12□□□□□ -1.43
VPS13D-202ENST00000460333 MARC1Q5VT66 337 aa6.12□□□□□ -1.43
VPS13D-202ENST00000460333 CNKSR3Q6P9H4 555 aa6.12□□□□□ -1.43
VPS13D-202ENST00000460333 PLEKHG7Q6ZR37 379 aa6.12□□□□□ -1.43
VPS13D-202ENST00000460333 ZNF767PQ75MW2 155 aa6.12□□□□□ -1.43
VPS13D-202ENST00000460333 OR8H3Q8N146 312 aa6.12□□□□□ -1.43
VPS13D-202ENST00000460333 PARP8Q8N3A8 854 aa6.12□□□□□ -1.43
VPS13D-202ENST00000460333 ARFGAP1Q8N6T3 406 aa6.12□□□□□ -1.43
VPS13D-202ENST00000460333 KCTD4Q8WVF5 259 aa6.12□□□□□ -1.43
VPS13D-202ENST00000460333 ARNTL2Q8WYA1 636 aa6.12□□□□□ -1.43
VPS13D-202ENST00000460333 HDAC2Q92769 488 aaKnown RBP6.12□□□□□ -1.43
VPS13D-202ENST00000460333 AURKBQ96GD4 344 aaPredicted RBP6.12□□□□□ -1.43
VPS13D-202ENST00000460333 DMRTB1Q96MA1 342 aa6.12□□□□□ -1.43
VPS13D-202ENST00000460333 CEP295NLQ96MC4 621 aa6.12□□□□□ -1.43
VPS13D-202ENST00000460333 RIPOR3Q96MK2 946 aa6.12□□□□□ -1.43
VPS13D-202ENST00000460333 SPON2Q9BUD6 331 aa6.12□□□□□ -1.43
VPS13D-202ENST00000460333 MCOLN1Q9GZU1 580 aa6.12□□□□□ -1.43
VPS13D-202ENST00000460333 ADAM7Q9H2U9 754 aa6.12□□□□□ -1.43
VPS13D-202ENST00000460333 SMOC2Q9H3U7 446 aa6.12□□□□□ -1.43
VPS13D-202ENST00000460333 ALG2Q9H553 416 aa6.12□□□□□ -1.43
VPS13D-202ENST00000460333 LATS2Q9NRM7 1088 aa6.12□□□□□ -1.43
VPS13D-202ENST00000460333 PIGVQ9NUD9 493 aa6.12□□□□□ -1.43
VPS13D-202ENST00000460333 ARMC1Q9NVT9 282 aa6.12□□□□□ -1.43
VPS13D-202ENST00000460333 RBM22Q9NW64 420 aaKnown RBP eCLIP6.12□□□□□ -1.432e-7■■■■□ 24.2
VPS13D-202ENST00000460333 MEIS3P2A8K0S8 358 aa6.11□□□□□ -1.43
VPS13D-202ENST00000460333 FAM47E-STBD1D6RA91 191 aa6.11□□□□□ -1.43
VPS13D-202ENST00000460333 KCNK1O00180 336 aa6.11□□□□□ -1.43
VPS13D-202ENST00000460333 TEX28O15482 410 aa6.11□□□□□ -1.43
VPS13D-202ENST00000460333 NUAK1O60285 661 aa6.11□□□□□ -1.43
VPS13D-202ENST00000460333 PPIBP23284 216 aaKnown RBP6.11□□□□□ -1.43
VPS13D-202ENST00000460333 PSMA1P25786 263 aaKnown RBP6.11□□□□□ -1.43
VPS13D-202ENST00000460333 PSMB4P28070 264 aa6.11□□□□□ -1.43
VPS13D-202ENST00000460333 PPP3CCP48454 512 aa6.11□□□□□ -1.43
VPS13D-202ENST00000460333 SMIM11AP58511 58 aa6.11□□□□□ -1.43
VPS13D-202ENST00000460333 GABARAPL2P60520 117 aa6.11□□□□□ -1.43
VPS13D-202ENST00000460333 SRP54P61011 504 aaKnown RBP6.11□□□□□ -1.43
VPS13D-202ENST00000460333 PRKCQQ04759 706 aa6.11□□□□□ -1.43
VPS13D-202ENST00000460333 LIPEQ05469 1076 aa6.11□□□□□ -1.43
VPS13D-202ENST00000460333 CCNIQ14094 377 aa6.11□□□□□ -1.43
VPS13D-202ENST00000460333 SUZ12Q15022 739 aaKnown RBP6.11□□□□□ -1.43
VPS13D-202ENST00000460333 ZNF404Q494X3 552 aa6.11□□□□□ -1.43
VPS13D-202ENST00000460333 HECTD3Q5T447 861 aa6.11□□□□□ -1.43
VPS13D-202ENST00000460333 OGFOD2Q6N063 350 aa6.11□□□□□ -1.43
VPS13D-202ENST00000460333 UGT2A3Q6UWM9 527 aa6.11□□□□□ -1.43
VPS13D-202ENST00000460333 KDELC2Q7Z4H8 507 aa6.11□□□□□ -1.43
VPS13D-202ENST00000460333 SLC41A1Q8IVJ1 513 aa6.11□□□□□ -1.43
VPS13D-202ENST00000460333 ZZZ3Q8IYH5 903 aa6.11□□□□□ -1.43
VPS13D-202ENST00000460333 OR2T12Q8NG77 320 aa6.11□□□□□ -1.43
VPS13D-202ENST00000460333 METTL6Q8TCB7 284 aa6.11□□□□□ -1.43
VPS13D-202ENST00000460333 DENND1AQ8TEH3 1009 aa6.11□□□□□ -1.43
VPS13D-202ENST00000460333 HDAC10Q969S8 669 aa6.11□□□□□ -1.43
VPS13D-202ENST00000460333 RTP4Q96DX8 246 aa6.11□□□□□ -1.43
VPS13D-202ENST00000460333 CELF6Q96J87 481 aaKnown RBP6.11□□□□□ -1.43
VPS13D-202ENST00000460333 MAGEB10Q96LZ2 347 aaPredicted RBP6.11□□□□□ -1.43
VPS13D-202ENST00000460333 EBF4Q9BQW3 602 aa6.11□□□□□ -1.43
VPS13D-202ENST00000460333 GTPBP2Q9BX10 602 aaKnown RBP6.11□□□□□ -1.43
VPS13D-202ENST00000460333 TTYH1Q9H313 450 aaPredicted RBP6.11□□□□□ -1.43
VPS13D-202ENST00000460333 LIN28AQ9H9Z2 209 aaKnown RBP6.11□□□□□ -1.43
VPS13D-202ENST00000460333 CSNK1G1Q9HCP0 422 aa6.11□□□□□ -1.43
VPS13D-202ENST00000460333 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP6.11□□□□□ -1.43
VPS13D-202ENST00000460333 ADAMTS6Q9UKP5 1117 aa6.11□□□□□ -1.43
VPS13D-202ENST00000460333 TLR6Q9Y2C9 796 aa6.11□□□□□ -1.43
VPS13D-202ENST00000460333 ZNF510Q9Y2H8 683 aa6.11□□□□□ -1.43
VPS13D-202ENST00000460333 IFT52Q9Y366 437 aa6.11□□□□□ -1.43
VPS13D-202ENST00000460333 SAMHD1Q9Y3Z3 626 aaKnown RBP6.11□□□□□ -1.43
VPS13D-202ENST00000460333 WDR81Q562E7 1941 aa6.11□□□□□ -1.43
VPS13D-202ENST00000460333 ZSCAN5BA6NJL1 495 aa6.11□□□□□ -1.43
VPS13D-202ENST00000460333 SLC28A1O00337 649 aa6.11□□□□□ -1.43
VPS13D-202ENST00000460333 MSX2P35548 267 aaPredicted RBP6.11□□□□□ -1.43
VPS13D-202ENST00000460333 SOAT1P35610 550 aa6.11□□□□□ -1.43
VPS13D-202ENST00000460333 CHI3L1P36222 383 aaPredicted RBP6.11□□□□□ -1.43
VPS13D-202ENST00000460333 STT3AP46977 705 aa6.11□□□□□ -1.43
VPS13D-202ENST00000460333 IDH2P48735 452 aaKnown RBP6.11□□□□□ -1.43
VPS13D-202ENST00000460333 CDH15P55291 814 aa6.11□□□□□ -1.43
VPS13D-202ENST00000460333 KCNJ11Q14654 390 aa6.11□□□□□ -1.43
VPS13D-202ENST00000460333 MAPKAPK3Q16644 382 aa6.11□□□□□ -1.43
VPS13D-202ENST00000460333 TEX44Q53QW1 395 aa6.11□□□□□ -1.43
VPS13D-202ENST00000460333 COLEC12Q5KU26 742 aa6.11□□□□□ -1.43
VPS13D-202ENST00000460333 WDR45BQ5MNZ6 344 aa6.11□□□□□ -1.43
VPS13D-202ENST00000460333 IL31Q6EBC2 164 aa6.11□□□□□ -1.43
VPS13D-202ENST00000460333 PM20D1Q6GTS8 502 aa6.11□□□□□ -1.43
VPS13D-202ENST00000460333 PYROXD2Q8N2H3 581 aa6.11□□□□□ -1.43
VPS13D-202ENST00000460333 TMEM130Q8N3G9 435 aa6.11□□□□□ -1.43
VPS13D-202ENST00000460333 NKAPQ8N5F7 415 aaKnown RBP6.11□□□□□ -1.43
VPS13D-202ENST00000460333 ZNF781Q8N8C0 355 aa6.11□□□□□ -1.43
VPS13D-202ENST00000460333 ZNF486Q96H40 463 aaPredicted RBP6.11□□□□□ -1.43
VPS13D-202ENST00000460333 HERPUD2Q9BSE4 406 aa6.11□□□□□ -1.43
VPS13D-202ENST00000460333 ACTR8Q9H981 624 aa6.11□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms