RNA–Protein interactions for RNA: ENST00000454569.5

SCN9A-205, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,585 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-205ENST00000454569 NFE2L1Q14494 772 aa10.78□□□□□ -0.68
SCN9A-205ENST00000454569 GBX1Q14549 363 aa10.78□□□□□ -0.68
SCN9A-205ENST00000454569 ANGPT1Q15389 498 aa10.78□□□□□ -0.68
SCN9A-205ENST00000454569 OR4D1Q15615 310 aa10.78□□□□□ -0.68
SCN9A-205ENST00000454569 PYCR3Q53H96 274 aa10.78□□□□□ -0.68
SCN9A-205ENST00000454569 PRAMEF14Q5SWL7 426 aa10.78□□□□□ -0.68
SCN9A-205ENST00000454569 N4BP2L1Q5TBK1 243 aaPredicted RBP10.78□□□□□ -0.68
SCN9A-205ENST00000454569 SLC36A4Q6YBV0 504 aa10.78□□□□□ -0.68
SCN9A-205ENST00000454569 KYAT3Q6YP21 454 aaKnown RBP10.78□□□□□ -0.68
SCN9A-205ENST00000454569 RD3Q7Z3Z2 195 aa10.78□□□□□ -0.68
SCN9A-205ENST00000454569 SPATS2Q86XZ4 545 aaKnown RBP10.78□□□□□ -0.68
SCN9A-205ENST00000454569 ZBTB2Q8N680 514 aa10.78□□□□□ -0.68
SCN9A-205ENST00000454569 ARFGAP2Q8N6H7 521 aa10.78□□□□□ -0.68
SCN9A-205ENST00000454569 CCL4L1Q8NHW4 92 aa10.78□□□□□ -0.68
SCN9A-205ENST00000454569 MGARPQ8TDB4 240 aa10.78□□□□□ -0.68
SCN9A-205ENST00000454569 ACMSDQ8TDX5 336 aa10.78□□□□□ -0.68
SCN9A-205ENST00000454569 GAB3Q8WWW8 586 aa10.78□□□□□ -0.68
SCN9A-205ENST00000454569 ELMO1Q92556 727 aa10.78□□□□□ -0.68
SCN9A-205ENST00000454569 DLG3Q92796 817 aa10.78□□□□□ -0.68
SCN9A-205ENST00000454569 INPP5DQ92835 1189 aa10.78□□□□□ -0.68
SCN9A-205ENST00000454569 MOCOSQ96EN8 888 aa10.78□□□□□ -0.68
SCN9A-205ENST00000454569 LINGO1Q96FE5 620 aa10.78□□□□□ -0.68
SCN9A-205ENST00000454569 SCARF2Q96GP6 870 aaPredicted RBP10.78□□□□□ -0.68
SCN9A-205ENST00000454569 SPACA7Q96KW9 195 aa10.78□□□□□ -0.68
SCN9A-205ENST00000454569 FAM111AQ96PZ2 611 aa10.78□□□□□ -0.68
SCN9A-205ENST00000454569 USB1Q9BQ65 265 aaKnown RBP10.78□□□□□ -0.68
SCN9A-205ENST00000454569 CCM2Q9BSQ5 444 aa10.78□□□□□ -0.68
SCN9A-205ENST00000454569 CYP4F12Q9HCS2 524 aa10.78□□□□□ -0.68
SCN9A-205ENST00000454569 TM9SF3Q9HD45 589 aa10.78□□□□□ -0.68
SCN9A-205ENST00000454569 AASDHPPTQ9NRN7 309 aa10.78□□□□□ -0.68
SCN9A-205ENST00000454569 SPATS2LQ9NUQ6 558 aaKnown RBP10.78□□□□□ -0.68
SCN9A-205ENST00000454569 TRMT6Q9UJA5 497 aaKnown RBP10.78□□□□□ -0.68
SCN9A-205ENST00000454569 MOSPD1Q9UJG1 213 aa10.78□□□□□ -0.68
SCN9A-205ENST00000454569 TLK1Q9UKI8 766 aa10.78□□□□□ -0.68
SCN9A-205ENST00000454569 FBXO4Q9UKT5 387 aa10.78□□□□□ -0.68
SCN9A-205ENST00000454569 DMTF1Q9Y222 760 aa10.78□□□□□ -0.68
SCN9A-205ENST00000454569 DNAJC16Q9Y2G8 782 aa10.78□□□□□ -0.68
SCN9A-205ENST00000454569 PLLPQ9Y342 182 aa10.78□□□□□ -0.68
SCN9A-205ENST00000454569 COMMD10Q9Y6G5 202 aa10.78□□□□□ -0.68
SCN9A-205ENST00000454569 SNRNP200O75643 2136 aaKnown RBP10.78□□□□□ -0.68
SCN9A-205ENST00000454569 SLC5A10A0PJK1 596 aa10.77□□□□□ -0.68
SCN9A-205ENST00000454569 PRSS38A1L453 326 aa10.77□□□□□ -0.68
SCN9A-205ENST00000454569 A6NNZ2 444 aa10.77□□□□□ -0.68
SCN9A-205ENST00000454569 MEI4A8MW99 385 aa10.77□□□□□ -0.68
SCN9A-205ENST00000454569 TARM1B6A8C7 271 aa10.77□□□□□ -0.68
SCN9A-205ENST00000454569 CACNB4O00305 520 aaPredicted RBP10.77□□□□□ -0.68
SCN9A-205ENST00000454569 PRPF4O43172 522 aaKnown RBP eCLIP10.77□□□□□ -0.686e-9■□□□□ 11.3
SCN9A-205ENST00000454569 KLHL2O95198 593 aa10.77□□□□□ -0.68
SCN9A-205ENST00000454569 HOXC4P09017 264 aaPredicted RBP10.77□□□□□ -0.68
SCN9A-205ENST00000454569 RALBP11234 206 aa10.77□□□□□ -0.68
SCN9A-205ENST00000454569 CHN1P15882 459 aa10.77□□□□□ -0.68
SCN9A-205ENST00000454569 GNPDA1P46926 289 aa10.77□□□□□ -0.68
SCN9A-205ENST00000454569 CSNK1EP49674 416 aaKnown RBP10.77□□□□□ -0.68
SCN9A-205ENST00000454569 HSPA14Q0VDF9 509 aa10.77□□□□□ -0.68
SCN9A-205ENST00000454569 FZD2Q14332 565 aa10.77□□□□□ -0.68
SCN9A-205ENST00000454569 ALG11Q2TAA5 492 aa10.77□□□□□ -0.68
SCN9A-205ENST00000454569 PLK5Q496M5 336 aa10.77□□□□□ -0.68
SCN9A-205ENST00000454569 CES4AQ5XG92 561 aa10.77□□□□□ -0.68
SCN9A-205ENST00000454569 PMS2CLQ68D20 193 aa10.77□□□□□ -0.68
SCN9A-205ENST00000454569 TTC19Q6DKK2 380 aaPredicted RBP10.77□□□□□ -0.68
SCN9A-205ENST00000454569 CHST15Q7LFX5 561 aaPredicted RBP10.77□□□□□ -0.68
SCN9A-205ENST00000454569 ISCA2Q86U28 154 aa10.77□□□□□ -0.68
SCN9A-205ENST00000454569 CFAP206Q8IYR0 622 aa10.77□□□□□ -0.68
SCN9A-205ENST00000454569 FSTL5Q8N475 847 aaPredicted RBP10.77□□□□□ -0.68
SCN9A-205ENST00000454569 OR56A4Q8NGH8 313 aa10.77□□□□□ -0.68
SCN9A-205ENST00000454569 DNASE2BQ8WZ79 361 aa10.77□□□□□ -0.68
SCN9A-205ENST00000454569 TSPAN17Q96FV3 270 aa10.77□□□□□ -0.68
SCN9A-205ENST00000454569 PCED1AQ9H1Q7 454 aa10.77□□□□□ -0.68
SCN9A-205ENST00000454569 POPDC3Q9HBV1 291 aa10.77□□□□□ -0.68
SCN9A-205ENST00000454569 SSU72Q9NP77 194 aaKnown RBP10.77□□□□□ -0.68
SCN9A-205ENST00000454569 ACSS2Q9NR19 701 aa10.77□□□□□ -0.68
SCN9A-205ENST00000454569 MKS1Q9NXB0 559 aa10.77□□□□□ -0.68
SCN9A-205ENST00000454569 SENP1Q9P0U3 644 aa10.77□□□□□ -0.68
SCN9A-205ENST00000454569 CPSF2Q9P2I0 782 aaKnown RBP10.77□□□□□ -0.68
SCN9A-205ENST00000454569 ADAMTS6Q9UKP5 1117 aa10.77□□□□□ -0.68
SCN9A-205ENST00000454569 GPR34Q9UPC5 381 aa10.77□□□□□ -0.68
SCN9A-205ENST00000454569 KCNK6Q9Y257 313 aa10.77□□□□□ -0.68
SCN9A-205ENST00000454569 A0A087X1B8 175 aa10.77□□□□□ -0.69
SCN9A-205ENST00000454569 SPTY2D1-AS1A0A0U1RR47 76 aa10.77□□□□□ -0.69
SCN9A-205ENST00000454569 NPEPPSL1A6NEC2 478 aa10.77□□□□□ -0.69
SCN9A-205ENST00000454569 NEMP2A6NFY4 417 aa10.77□□□□□ -0.69
SCN9A-205ENST00000454569 PRR19A6NJB7 356 aa10.77□□□□□ -0.69
SCN9A-205ENST00000454569 PLIN3O60664 434 aa10.77□□□□□ -0.69
SCN9A-205ENST00000454569 EML2O95834 649 aa10.77□□□□□ -0.69
SCN9A-205ENST00000454569 PROCP04070 461 aa10.77□□□□□ -0.69
SCN9A-205ENST00000454569 CELA2BP08218 269 aaPredicted RBP10.77□□□□□ -0.69
SCN9A-205ENST00000454569 LTA4HP09960 611 aaKnown RBP10.77□□□□□ -0.69
SCN9A-205ENST00000454569 ACP5P13686 325 aa10.77□□□□□ -0.69
SCN9A-205ENST00000454569 AK4P27144 223 aaPredicted RBP10.77□□□□□ -0.69
SCN9A-205ENST00000454569 CD38P28907 300 aa10.77□□□□□ -0.69
SCN9A-205ENST00000454569 SKIV2L2P42285 1042 aaKnown RBP10.77□□□□□ -0.69
SCN9A-205ENST00000454569 DHPSP49366 369 aaPredicted RBP10.77□□□□□ -0.69
SCN9A-205ENST00000454569 HK3P52790 923 aa10.77□□□□□ -0.69
SCN9A-205ENST00000454569 YPEL5P62699 121 aa10.77□□□□□ -0.69
SCN9A-205ENST00000454569 ARHGAP8P85298 464 aa10.77□□□□□ -0.69
SCN9A-205ENST00000454569 BNC1Q01954 994 aa10.77□□□□□ -0.69
SCN9A-205ENST00000454569 GTF2H3Q13889 308 aa10.77□□□□□ -0.69
SCN9A-205ENST00000454569 TAF1BQ53T94 588 aaPredicted RBP10.77□□□□□ -0.69
SCN9A-205ENST00000454569 LRRC8EQ6NSJ5 796 aa10.77□□□□□ -0.69
SCN9A-205ENST00000454569 LVRNQ6Q4G3 990 aa10.77□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms