RNA–Protein interactions for RNA: ENST00000430118.1

HMGB3-203, Transcript of high mobility group box 3, humanhuman

TSL 1 (best)

Gene HMGB3, Length 529 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-203ENST00000430118 MVB12BQ9H7P6 319 aa4.09□□□□□ -1.75
HMGB3-203ENST00000430118 UBE2ZQ9H832 354 aaPredicted RBP4.09□□□□□ -1.75
HMGB3-203ENST00000430118 SPAG4Q9NPE6 437 aa4.09□□□□□ -1.75
HMGB3-203ENST00000430118 PIH1D3Q9NQM4 214 aaKnown RBP4.09□□□□□ -1.75
HMGB3-203ENST00000430118 WDR35Q9P2L0 1181 aa4.09□□□□□ -1.75
HMGB3-203ENST00000430118 FRMD4AQ9P2Q2 1039 aaPredicted RBP4.09□□□□□ -1.75
HMGB3-203ENST00000430118 CRNNQ9UBG3 495 aaPredicted RBP4.09□□□□□ -1.75
HMGB3-203ENST00000430118 CTNNAL1Q9UBT7 734 aa4.09□□□□□ -1.75
HMGB3-203ENST00000430118 DDX25Q9UHL0 483 aaKnown RBP4.09□□□□□ -1.75
HMGB3-203ENST00000430118 CTNNA3Q9UI47 895 aa4.09□□□□□ -1.75
HMGB3-203ENST00000430118 PACSIN3Q9UKS6 424 aa4.09□□□□□ -1.75
HMGB3-203ENST00000430118 PLAGL1Q9UM63 463 aa4.09□□□□□ -1.75
HMGB3-203ENST00000430118 ZNF148Q9UQR1 794 aa4.09□□□□□ -1.75
HMGB3-203ENST00000430118 PDS5AQ29RF7 1337 aaKnown RBP4.09□□□□□ -1.75
HMGB3-203ENST00000430118 PLXNA1Q9UIW2 1896 aa4.09□□□□□ -1.76
HMGB3-203ENST00000430118 KANSL1LA0AUZ9 987 aa4.08□□□□□ -1.76
HMGB3-203ENST00000430118 GAGE12JA6NER3 117 aa4.08□□□□□ -1.76
HMGB3-203ENST00000430118 B8ZZF3 427 aa4.08□□□□□ -1.76
HMGB3-203ENST00000430118 NCANO14594 1321 aa4.08□□□□□ -1.76
HMGB3-203ENST00000430118 MAP2K7O14733 419 aa4.08□□□□□ -1.76
HMGB3-203ENST00000430118 IPO8O15397 1037 aaKnown RBP4.08□□□□□ -1.76
HMGB3-203ENST00000430118 STX6O43752 255 aa4.08□□□□□ -1.76
HMGB3-203ENST00000430118 SLC25A17O43808 307 aa4.08□□□□□ -1.76
HMGB3-203ENST00000430118 NCOR1O75376 2440 aa4.08□□□□□ -1.76
HMGB3-203ENST00000430118 CABYRO75952 493 aa4.08□□□□□ -1.76
HMGB3-203ENST00000430118 SLC25A27O95847 323 aa4.08□□□□□ -1.76
HMGB3-203ENST00000430118 PGK1P00558 417 aa4.08□□□□□ -1.76
HMGB3-203ENST00000430118 CA3P07451 260 aa4.08□□□□□ -1.76
HMGB3-203ENST00000430118 MMP9P14780 707 aa4.08□□□□□ -1.76
HMGB3-203ENST00000430118 IL7RP16871 459 aa4.08□□□□□ -1.76
HMGB3-203ENST00000430118 ERCC2P18074 760 aa4.08□□□□□ -1.76
HMGB3-203ENST00000430118 DCTDP32321 178 aa4.08□□□□□ -1.76
HMGB3-203ENST00000430118 CIITAP33076 1130 aa4.08□□□□□ -1.76
HMGB3-203ENST00000430118 TCF7P36402 384 aaPredicted RBP4.08□□□□□ -1.76
HMGB3-203ENST00000430118 YPEL5P62699 121 aa4.08□□□□□ -1.76
HMGB3-203ENST00000430118 SIRPAP78324 504 aa4.08□□□□□ -1.76
HMGB3-203ENST00000430118 CFHR1Q03591 330 aa4.08□□□□□ -1.76
HMGB3-203ENST00000430118 ST3GAL1Q11201 340 aa4.08□□□□□ -1.76
HMGB3-203ENST00000430118 ITGADQ13349 1161 aa4.08□□□□□ -1.76
HMGB3-203ENST00000430118 NAE1Q13564 534 aa4.08□□□□□ -1.76
HMGB3-203ENST00000430118 IL11RAQ14626 422 aa4.08□□□□□ -1.76
HMGB3-203ENST00000430118 RABEP1Q15276 862 aa4.08□□□□□ -1.76
HMGB3-203ENST00000430118 LEXMQ3ZCV2 418 aa4.08□□□□□ -1.76
HMGB3-203ENST00000430118 HSP90B2PQ58FF3 399 aa4.08□□□□□ -1.76
HMGB3-203ENST00000430118 ARMC4Q5T2S8 1044 aa4.08□□□□□ -1.76
HMGB3-203ENST00000430118 PRAMEF17Q5VTA0 474 aa4.08□□□□□ -1.76
HMGB3-203ENST00000430118 LRRC8EQ6NSJ5 796 aa4.08□□□□□ -1.76
HMGB3-203ENST00000430118 DEF8Q6ZN54 512 aa4.08□□□□□ -1.76
HMGB3-203ENST00000430118 DPPA4Q7L190 304 aa4.08□□□□□ -1.76
HMGB3-203ENST00000430118 PATL1Q86TB9 770 aaKnown RBP4.08□□□□□ -1.76
HMGB3-203ENST00000430118 SNX32Q86XE0 403 aa4.08□□□□□ -1.76
HMGB3-203ENST00000430118 IQCA1Q86XH1 822 aa4.08□□□□□ -1.76
HMGB3-203ENST00000430118 LURAP1LQ8IV03 231 aa4.08□□□□□ -1.76
HMGB3-203ENST00000430118 SLC35F3Q8IY50 421 aa4.08□□□□□ -1.76
HMGB3-203ENST00000430118 DOCK3Q8IZD9 2030 aa4.08□□□□□ -1.76
HMGB3-203ENST00000430118 ADGRF4Q8IZF3 695 aa4.08□□□□□ -1.76
HMGB3-203ENST00000430118 ZBTB2Q8N680 514 aa4.08□□□□□ -1.76
HMGB3-203ENST00000430118 TC2NQ8N9U0 490 aa4.08□□□□□ -1.76
HMGB3-203ENST00000430118 PNLDC1Q8NA58 520 aaKnown RBP4.08□□□□□ -1.76
HMGB3-203ENST00000430118 C8orf58Q8NAV2 365 aa4.08□□□□□ -1.76
HMGB3-203ENST00000430118 MSANTD4Q8NCY6 345 aa4.08□□□□□ -1.76
HMGB3-203ENST00000430118 TRPV1Q8NER1 839 aa4.08□□□□□ -1.76
HMGB3-203ENST00000430118 OR6J1Q8NGC5 347 aa4.08□□□□□ -1.76
HMGB3-203ENST00000430118 SETD6Q8TBK2 473 aa4.08□□□□□ -1.76
HMGB3-203ENST00000430118 PHOSPHO2Q8TCD6 241 aa4.08□□□□□ -1.76
HMGB3-203ENST00000430118 SH3RF3Q8TEJ3 882 aaPredicted RBP4.08□□□□□ -1.76
HMGB3-203ENST00000430118 ADAMTS14Q8WXS8 1223 aa4.08□□□□□ -1.76
HMGB3-203ENST00000430118 HDAC11Q96DB2 347 aa4.08□□□□□ -1.76
HMGB3-203ENST00000430118 EGFL8Q99944 293 aa4.08□□□□□ -1.76
HMGB3-203ENST00000430118 SH3GL2Q99962 352 aa4.08□□□□□ -1.76
HMGB3-203ENST00000430118 EFHD1Q9BUP0 239 aa4.08□□□□□ -1.76
HMGB3-203ENST00000430118 SPATC1LQ9H0A9 340 aa4.08□□□□□ -1.76
HMGB3-203ENST00000430118 TKTL2Q9H0I9 626 aa4.08□□□□□ -1.76
HMGB3-203ENST00000430118 CPNE5Q9HCH3 593 aa4.08□□□□□ -1.76
HMGB3-203ENST00000430118 HOXC10Q9NYD6 342 aa4.08□□□□□ -1.76
HMGB3-203ENST00000430118 ARPP21Q9UBL0 812 aaPredicted RBP4.08□□□□□ -1.76
HMGB3-203ENST00000430118 DNAJB4Q9UDY4 337 aa4.08□□□□□ -1.76
HMGB3-203ENST00000430118 RSPH14Q9UHP6 348 aa4.08□□□□□ -1.76
HMGB3-203ENST00000430118 TLK1Q9UKI8 766 aa4.08□□□□□ -1.76
HMGB3-203ENST00000430118 SYNRGQ9UMZ2 1314 aa4.08□□□□□ -1.76
HMGB3-203ENST00000430118 SMC3Q9UQE7 1217 aa4.08□□□□□ -1.76
HMGB3-203ENST00000430118 NFE2L3Q9Y4A8 694 aa4.08□□□□□ -1.76
HMGB3-203ENST00000430118 DDX49Q9Y6V7 483 aaKnown RBP4.08□□□□□ -1.76
HMGB3-203ENST00000430118 TCF20Q9UGU0 1960 aaKnown RBP4.07□□□□□ -1.76
HMGB3-203ENST00000430118 TMEM202A6NGA9 273 aa4.07□□□□□ -1.76
HMGB3-203ENST00000430118 MAGEB17A8MXT2 336 aa4.07□□□□□ -1.76
HMGB3-203ENST00000430118 IFNL4K9M1U5 179 aa4.07□□□□□ -1.76
HMGB3-203ENST00000430118 HSPB6O14558 160 aa4.07□□□□□ -1.76
HMGB3-203ENST00000430118 MGST3O14880 152 aa4.07□□□□□ -1.76
HMGB3-203ENST00000430118 SMAD9O15198 467 aaKnown RBP4.07□□□□□ -1.76
HMGB3-203ENST00000430118 SLC7A4O43246 635 aa4.07□□□□□ -1.76
HMGB3-203ENST00000430118 NARSO43776 548 aaKnown RBP4.07□□□□□ -1.76
HMGB3-203ENST00000430118 SYNCRIPO60506 623 aaKnown RBP4.07□□□□□ -1.76
HMGB3-203ENST00000430118 ATP2C2O75185 946 aa4.07□□□□□ -1.76
HMGB3-203ENST00000430118 PSMD10O75832 226 aa4.07□□□□□ -1.76
HMGB3-203ENST00000430118 TPM3P06753 285 aa4.07□□□□□ -1.76
HMGB3-203ENST00000430118 SUPT20HL2P0C7V6 817 aa4.07□□□□□ -1.76
HMGB3-203ENST00000430118 FDPSP14324 419 aaKnown RBP4.07□□□□□ -1.76
HMGB3-203ENST00000430118 ANXA7P20073 488 aaKnown RBP4.07□□□□□ -1.76
HMGB3-203ENST00000430118 SCP2P22307 547 aa4.07□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms