RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 ZDHHC20Q5W0Z9 365 aa11.29□□□□□ -0.6
USP4-204ENST00000416417 CFAP206Q8IYR0 622 aa11.29□□□□□ -0.6
USP4-204ENST00000416417 SLC38A9Q8NBW4 561 aa11.29□□□□□ -0.6
USP4-204ENST00000416417 OR4E2Q8NGC2 313 aa11.29□□□□□ -0.6
USP4-204ENST00000416417 CCDC110Q8TBZ0 833 aa11.29□□□□□ -0.6
USP4-204ENST00000416417 ACTL9Q8TC94 416 aa11.29□□□□□ -0.6
USP4-204ENST00000416417 UBXN4Q92575 508 aa11.29□□□□□ -0.6
USP4-204ENST00000416417 RBM41Q96IZ5 413 aaKnown RBP11.29□□□□□ -0.6
USP4-204ENST00000416417 ZNF514Q96K75 400 aaPredicted RBP11.29□□□□□ -0.6
USP4-204ENST00000416417 VAT1Q99536 393 aa11.29□□□□□ -0.6
USP4-204ENST00000416417 TLR10Q9BXR5 811 aa11.29□□□□□ -0.6
USP4-204ENST00000416417 KLHL25Q9H0H3 589 aa11.29□□□□□ -0.6
USP4-204ENST00000416417 SEMA5BQ9P283 1151 aa11.29□□□□□ -0.6
USP4-204ENST00000416417 SLC24A2Q9UI40 661 aa11.29□□□□□ -0.6
USP4-204ENST00000416417 POLHQ9Y253 713 aa11.29□□□□□ -0.6
USP4-204ENST00000416417 MAN2B2Q9Y2E5 1009 aa11.29□□□□□ -0.6
USP4-204ENST00000416417 RELNP78509 3460 aa11.28□□□□□ -0.6
USP4-204ENST00000416417 GOLGA6L3A6NEY3 463 aa11.28□□□□□ -0.6
USP4-204ENST00000416417 TLCD2A6NGC4 264 aa11.28□□□□□ -0.6
USP4-204ENST00000416417 MKRN2OSH3BPM6 223 aa11.28□□□□□ -0.6
USP4-204ENST00000416417 APOC4-APOC2K7ER74 178 aa11.28□□□□□ -0.6
USP4-204ENST00000416417 KCNN4O15554 427 aa11.28□□□□□ -0.6
USP4-204ENST00000416417 KCNJ13O60928 360 aa11.28□□□□□ -0.6
USP4-204ENST00000416417 APOC2P02655 101 aa11.28□□□□□ -0.6
USP4-204ENST00000416417 SLC35G4P0C7Q5 338 aa11.28□□□□□ -0.6
USP4-204ENST00000416417 EIF3EP60228 445 aaKnown RBP11.28□□□□□ -0.6
USP4-204ENST00000416417 SRSF1Q07955 248 aaKnown RBP eCLIP11.28□□□□□ -0.6
USP4-204ENST00000416417 GPS2Q13227 327 aa11.28□□□□□ -0.6
USP4-204ENST00000416417 IL10RAQ13651 578 aa11.28□□□□□ -0.6
USP4-204ENST00000416417 TAF1AQ15573 450 aaPredicted RBP11.28□□□□□ -0.6
USP4-204ENST00000416417 C11orf63Q6NUN7 778 aa11.28□□□□□ -0.6
USP4-204ENST00000416417 ARMC6Q6NXE6 501 aa11.28□□□□□ -0.6
USP4-204ENST00000416417 DARS2Q6PI48 645 aaKnown RBP11.28□□□□□ -0.6
USP4-204ENST00000416417 RANBP10Q6VN20 620 aa11.28□□□□□ -0.6
USP4-204ENST00000416417 ASB18Q6ZVZ8 466 aa11.28□□□□□ -0.6
USP4-204ENST00000416417 OOSP2Q86WS3 158 aa11.28□□□□□ -0.6
USP4-204ENST00000416417 TMEM126BQ8IUX1 230 aa11.28□□□□□ -0.6
USP4-204ENST00000416417 TAB3Q8N5C8 712 aaPredicted RBP11.28□□□□□ -0.6
USP4-204ENST00000416417 PHC3Q8NDX5 983 aa11.28□□□□□ -0.6
USP4-204ENST00000416417 OR2L2Q8NH16 312 aa11.28□□□□□ -0.6
USP4-204ENST00000416417 DTX3LQ8TDB6 740 aa11.28□□□□□ -0.6
USP4-204ENST00000416417 TRIM5Q9C035 493 aa11.28□□□□□ -0.6
USP4-204ENST00000416417 SMOXQ9NWM0 555 aa11.28□□□□□ -0.6
USP4-204ENST00000416417 PIH1D1Q9NWS0 290 aaKnown RBP11.28□□□□□ -0.6
USP4-204ENST00000416417 SOHLH2Q9NX45 425 aa11.28□□□□□ -0.6
USP4-204ENST00000416417 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP11.28□□□□□ -0.6
USP4-204ENST00000416417 CRLS1Q9UJA2 301 aa11.28□□□□□ -0.6
USP4-204ENST00000416417 KCND3Q9UK17 655 aa11.28□□□□□ -0.6
USP4-204ENST00000416417 DNMT3AQ9Y6K1 912 aaPredicted RBP11.28□□□□□ -0.6
USP4-204ENST00000416417 SPENQ96T58 3664 aaKnown RBP11.27□□□□□ -0.6
USP4-204ENST00000416417 CCDC78A2IDD5 438 aa11.27□□□□□ -0.61
USP4-204ENST00000416417 SOWAHDA6NJG2 315 aa11.27□□□□□ -0.61
USP4-204ENST00000416417 SLC9B1P1A6NJY1 282 aa11.27□□□□□ -0.61
USP4-204ENST00000416417 C2orf81A6NN90 581 aa11.27□□□□□ -0.61
USP4-204ENST00000416417 PJA2O43164 708 aa11.27□□□□□ -0.61
USP4-204ENST00000416417 RFPL1O75677 317 aa11.27□□□□□ -0.61
USP4-204ENST00000416417 SCRG1O75711 98 aa11.27□□□□□ -0.61
USP4-204ENST00000416417 ANXA9O76027 345 aa11.27□□□□□ -0.61
USP4-204ENST00000416417 TPH1P17752 444 aa11.27□□□□□ -0.61
USP4-204ENST00000416417 HSD11B2P80365 405 aa11.27□□□□□ -0.61
USP4-204ENST00000416417 ACY1Q03154 408 aa11.27□□□□□ -0.61
USP4-204ENST00000416417 KLRB1Q12918 225 aa11.27□□□□□ -0.61
USP4-204ENST00000416417 MSLNQ13421 630 aaPredicted RBP11.27□□□□□ -0.61
USP4-204ENST00000416417 UBAP2LQ14157 1087 aaKnown RBP11.27□□□□□ -0.61
USP4-204ENST00000416417 KRT33BQ14525 404 aa11.27□□□□□ -0.61
USP4-204ENST00000416417 CRTC2Q53ET0 693 aaPredicted RBP11.27□□□□□ -0.61
USP4-204ENST00000416417 DENND5AQ6IQ26 1287 aa11.27□□□□□ -0.61
USP4-204ENST00000416417 KLHL35Q6PF15 583 aa11.27□□□□□ -0.61
USP4-204ENST00000416417 D2HGDHQ8N465 521 aa11.27□□□□□ -0.61
USP4-204ENST00000416417 TEX19Q8NA77 164 aa11.27□□□□□ -0.61
USP4-204ENST00000416417 MR1Q95460 341 aa11.27□□□□□ -0.61
USP4-204ENST00000416417 ZNF501Q96CX3 271 aaPredicted RBP11.27□□□□□ -0.61
USP4-204ENST00000416417 DCUN1D1Q96GG9 259 aa11.27□□□□□ -0.61
USP4-204ENST00000416417 OSBPL8Q9BZF1 889 aa11.27□□□□□ -0.61
USP4-204ENST00000416417 XKR8Q9H6D3 395 aa11.27□□□□□ -0.61
USP4-204ENST00000416417 KIR3DX1Q9H7L2 352 aa11.27□□□□□ -0.61
USP4-204ENST00000416417 ANKMY1Q9P2S6 941 aa11.27□□□□□ -0.61
USP4-204ENST00000416417 SBDSQ9Y3A5 250 aaKnown RBP eCLIP11.27□□□□□ -0.61
USP4-204ENST00000416417 PCDHGA6Q9Y5G7 932 aa11.27□□□□□ -0.61
USP4-204ENST00000416417 FLNCQ14315 2725 aa11.27□□□□□ -0.61
USP4-204ENST00000416417 CCDC66A2RUB6 948 aa11.26□□□□□ -0.61
USP4-204ENST00000416417 GSAPA4D1B5 854 aa11.26□□□□□ -0.61
USP4-204ENST00000416417 ARGFXA6NJG6 315 aa11.26□□□□□ -0.61
USP4-204ENST00000416417 MT-ND3P03897 115 aa11.26□□□□□ -0.61
USP4-204ENST00000416417 RBP3P10745 1247 aa11.26□□□□□ -0.61
USP4-204ENST00000416417 PVRP15151 417 aa11.26□□□□□ -0.61
USP4-204ENST00000416417 PTMSP20962 102 aa11.26□□□□□ -0.61
USP4-204ENST00000416417 CTNNA2P26232 953 aa11.26□□□□□ -0.61
USP4-204ENST00000416417 PTPN4P29074 926 aa11.26□□□□□ -0.61
USP4-204ENST00000416417 PDHA2P29803 388 aa11.26□□□□□ -0.61
USP4-204ENST00000416417 CTNNA1P35221 906 aaKnown RBP11.26□□□□□ -0.61
USP4-204ENST00000416417 PREPP48147 710 aa11.26□□□□□ -0.61
USP4-204ENST00000416417 LMAN1P49257 510 aa11.26□□□□□ -0.61
USP4-204ENST00000416417 CCL11P51671 97 aa11.26□□□□□ -0.61
USP4-204ENST00000416417 ZNF140P52738 457 aaPredicted RBP11.26□□□□□ -0.61
USP4-204ENST00000416417 PMS2P54278 862 aa11.26□□□□□ -0.61
USP4-204ENST00000416417 NAP1L1P55209 391 aaKnown RBP11.26□□□□□ -0.61
USP4-204ENST00000416417 ABRQ12979 859 aa11.26□□□□□ -0.61
USP4-204ENST00000416417 PRKG2Q13237 762 aa11.26□□□□□ -0.61
USP4-204ENST00000416417 SPA17Q15506 151 aa11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms