RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 SPPL2CQ8IUH8 684 aa13.18□□□□□ -0.3
CCDC88A-204ENST00000413716 TKTL2Q9H0I9 626 aa13.18□□□□□ -0.3
CCDC88A-204ENST00000413716 ASF1AQ9Y294 204 aa13.18□□□□□ -0.3
CCDC88A-204ENST00000413716 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.18□□□□□ -0.3
CCDC88A-204ENST00000413716 GABRB2P47870 512 aa13.18□□□□□ -0.3
CCDC88A-204ENST00000413716 C16orf59Q7L2K0 433 aa13.18□□□□□ -0.3
CCDC88A-204ENST00000413716 RIOX2Q8IUF8 465 aa13.18□□□□□ -0.3
CCDC88A-204ENST00000413716 SYNE4Q8N205 404 aa13.18□□□□□ -0.3
CCDC88A-204ENST00000413716 HJURPQ8NCD3 748 aaPredicted RBP13.18□□□□□ -0.3
CCDC88A-204ENST00000413716 CALML5Q9NZT1 146 aa13.18□□□□□ -0.3
CCDC88A-204ENST00000413716 ZNF99A8MXY4 864 aaPredicted RBP13.18□□□□□ -0.3
CCDC88A-204ENST00000413716 ALDH2P05091 517 aa13.18□□□□□ -0.3
CCDC88A-204ENST00000413716 IFNGR1P15260 489 aa13.18□□□□□ -0.3
CCDC88A-204ENST00000413716 CRYBG2Q8N1P7 616 aa13.18□□□□□ -0.3
CCDC88A-204ENST00000413716 ZNF527Q8NB42 609 aa13.18□□□□□ -0.3
CCDC88A-204ENST00000413716 POP1Q99575 1024 aaKnown RBP13.18□□□□□ -0.3
CCDC88A-204ENST00000413716 CXorf21Q9HAI6 301 aa13.18□□□□□ -0.3
CCDC88A-204ENST00000413716 TLL2Q9Y6L7 1015 aa13.18□□□□□ -0.3
CCDC88A-204ENST00000413716 GAKO14976 1311 aa13.17□□□□□ -0.3
CCDC88A-204ENST00000413716 RPL22P35268 128 aaKnown RBP13.17□□□□□ -0.3
CCDC88A-204ENST00000413716 ASB18Q6ZVZ8 466 aa13.17□□□□□ -0.3
CCDC88A-204ENST00000413716 MRPL45Q9BRJ2 306 aaKnown RBP13.17□□□□□ -0.3
CCDC88A-204ENST00000413716 NDUFB10O96000 172 aa13.17□□□□□ -0.3
CCDC88A-204ENST00000413716 FCGRTP55899 365 aa13.17□□□□□ -0.3
CCDC88A-204ENST00000413716 PTGR1Q14914 329 aa13.17□□□□□ -0.3
CCDC88A-204ENST00000413716 CAPN13Q6MZZ7 669 aaPredicted RBP13.17□□□□□ -0.3
CCDC88A-204ENST00000413716 GPAT4Q86UL3 456 aa13.17□□□□□ -0.3
CCDC88A-204ENST00000413716 PROKR2Q8NFJ6 384 aa13.17□□□□□ -0.3
CCDC88A-204ENST00000413716 GRID2O43424 1007 aa13.17□□□□□ -0.3
CCDC88A-204ENST00000413716 HCKP08631 526 aa13.17□□□□□ -0.3
CCDC88A-204ENST00000413716 GLP1RP43220 463 aa13.17□□□□□ -0.3
CCDC88A-204ENST00000413716 TEAD4Q15561 434 aa13.17□□□□□ -0.3
CCDC88A-204ENST00000413716 RYKP34925 604 aa13.17□□□□□ -0.3
CCDC88A-204ENST00000413716 PCSK9Q8NBP7 692 aaKnown RBP13.17□□□□□ -0.3
CCDC88A-204ENST00000413716 CENPNQ96H22 339 aaPredicted RBP13.17□□□□□ -0.3
CCDC88A-204ENST00000413716 ACOX3O15254 700 aa13.17□□□□□ -0.3
CCDC88A-204ENST00000413716 SEPT4O43236 478 aa13.17□□□□□ -0.3
CCDC88A-204ENST00000413716 UGT1A3P35503 534 aa13.17□□□□□ -0.3
CCDC88A-204ENST00000413716 POLR2HP52434 150 aaKnown RBP13.17□□□□□ -0.3
CCDC88A-204ENST00000413716 PPP1R26Q5T8A7 1209 aaPredicted RBP13.17□□□□□ -0.3
CCDC88A-204ENST00000413716 OR51D1Q8NGF3 324 aa13.17□□□□□ -0.3
CCDC88A-204ENST00000413716 UGT1A9O60656 530 aa13.17□□□□□ -0.3
CCDC88A-204ENST00000413716 OAZ2O95190 189 aa13.17□□□□□ -0.3
CCDC88A-204ENST00000413716 PLATP00750 562 aa13.17□□□□□ -0.3
CCDC88A-204ENST00000413716 VTNP04004 478 aa13.17□□□□□ -0.3
CCDC88A-204ENST00000413716 ABHD2P08910 425 aa13.17□□□□□ -0.3
CCDC88A-204ENST00000413716 CETPP11597 493 aa13.17□□□□□ -0.3
CCDC88A-204ENST00000413716 UGT1A6P19224 532 aa13.17□□□□□ -0.3
CCDC88A-204ENST00000413716 UGT1A1P22309 533 aa13.17□□□□□ -0.3
CCDC88A-204ENST00000413716 UGT1A4P22310 534 aa13.17□□□□□ -0.3
CCDC88A-204ENST00000413716 AHCYP23526 432 aa13.17□□□□□ -0.3
CCDC88A-204ENST00000413716 KHKP50053 298 aa13.17□□□□□ -0.3
CCDC88A-204ENST00000413716 ZNF81P51508 661 aa13.17□□□□□ -0.3
CCDC88A-204ENST00000413716 ZNF45Q02386 682 aa13.17□□□□□ -0.3
CCDC88A-204ENST00000413716 SH3D19Q5HYK7 790 aa13.17□□□□□ -0.3
CCDC88A-204ENST00000413716 SKA3Q8IX90 412 aa13.17□□□□□ -0.3
CCDC88A-204ENST00000413716 ZNF611Q8N823 705 aa13.17□□□□□ -0.3
CCDC88A-204ENST00000413716 RAD9AQ99638 391 aa13.17□□□□□ -0.3
CCDC88A-204ENST00000413716 UGT1A7Q9HAW7 530 aa13.17□□□□□ -0.3
CCDC88A-204ENST00000413716 UGT1A10Q9HAW8 530 aa13.17□□□□□ -0.3
CCDC88A-204ENST00000413716 UGT1A8Q9HAW9 530 aa13.17□□□□□ -0.3
CCDC88A-204ENST00000413716 ABCC13Q9NSE7 274 aa13.17□□□□□ -0.3
CCDC88A-204ENST00000413716 RPL36Q9Y3U8 105 aaKnown RBP13.17□□□□□ -0.3
CCDC88A-204ENST00000413716 PLD2O14939 933 aa13.17□□□□□ -0.3
CCDC88A-204ENST00000413716 HNRNPLP14866 589 aaKnown RBP eCLIP13.17□□□□□ -0.32e-7■■■■□ 24.6
CCDC88A-204ENST00000413716 SLC15A1P46059 708 aa13.17□□□□□ -0.3
CCDC88A-204ENST00000413716 DNM1P34Q6PK57 102 aa13.17□□□□□ -0.3
CCDC88A-204ENST00000413716 SLC5A5Q92911 643 aa13.17□□□□□ -0.3
CCDC88A-204ENST00000413716 OR51V1Q9H2C8 321 aa13.17□□□□□ -0.3
CCDC88A-204ENST00000413716 LRTM1Q9HBL6 345 aa13.17□□□□□ -0.3
CCDC88A-204ENST00000413716 BIN3Q9NQY0 253 aa13.17□□□□□ -0.3
CCDC88A-204ENST00000413716 SNX3O60493 162 aa13.17□□□□□ -0.3
CCDC88A-204ENST00000413716 ATG13O75143 517 aa13.17□□□□□ -0.3
CCDC88A-204ENST00000413716 GPIP06744 558 aa13.17□□□□□ -0.3
CCDC88A-204ENST00000413716 SF1Q15637 639 aaKnown RBP13.17□□□□□ -0.3
CCDC88A-204ENST00000413716 RBM48Q5RL73 367 aaKnown RBP13.17□□□□□ -0.3
CCDC88A-204ENST00000413716 TMPRSS11BQ86T26 416 aa13.17□□□□□ -0.3
CCDC88A-204ENST00000413716 ZNF578Q96N58 590 aaPredicted RBP13.17□□□□□ -0.3
CCDC88A-204ENST00000413716 DENND2DQ9H6A0 471 aaPredicted RBP13.17□□□□□ -0.3
CCDC88A-204ENST00000413716 KCNS2Q9ULS6 477 aa13.17□□□□□ -0.3
CCDC88A-204ENST00000413716 PEX14O75381 377 aa13.16□□□□□ -0.3
CCDC88A-204ENST00000413716 CLN5O75503 358 aa13.16□□□□□ -0.3
CCDC88A-204ENST00000413716 ABRAXAS2Q15018 415 aa13.16□□□□□ -0.3
CCDC88A-204ENST00000413716 TIGD2Q4W5G0 525 aa13.16□□□□□ -0.3
CCDC88A-204ENST00000413716 KCNN1Q92952 543 aa13.16□□□□□ -0.3
CCDC88A-204ENST00000413716 PPM1MQ96MI6 270 aa13.16□□□□□ -0.3
CCDC88A-204ENST00000413716 CD93Q9NPY3 652 aa13.16□□□□□ -0.3
CCDC88A-204ENST00000413716 LRFN1Q9P244 771 aa13.16□□□□□ -0.3
CCDC88A-204ENST00000413716 PCDHGA11Q9Y5H2 935 aa13.16□□□□□ -0.3
CCDC88A-204ENST00000413716 SMAD9O15198 467 aaKnown RBP13.16□□□□□ -0.3
CCDC88A-204ENST00000413716 ELFN1P0C7U0 828 aa13.16□□□□□ -0.3
CCDC88A-204ENST00000413716 CCKBRP32239 447 aa13.16□□□□□ -0.3
CCDC88A-204ENST00000413716 PSEN1P49768 467 aa13.16□□□□□ -0.3
CCDC88A-204ENST00000413716 GNG2P59768 71 aa13.16□□□□□ -0.3
CCDC88A-204ENST00000413716 PSMA6P60900 246 aaKnown RBP13.16□□□□□ -0.3
CCDC88A-204ENST00000413716 MIR1-1HGQ9H1L0 117 aa13.16□□□□□ -0.3
CCDC88A-204ENST00000413716 MARCH2Q9P0N8 246 aa13.16□□□□□ -0.3
CCDC88A-204ENST00000413716 GSG1L2A8MUP6 293 aa13.16□□□□□ -0.3
CCDC88A-204ENST00000413716 ELOAQ14241 798 aaKnown RBP13.16□□□□□ -0.3
CCDC88A-204ENST00000413716 BTBD16Q32M84 506 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms