RNA–Protein interactions for RNA: ENST00000409470.5

USP39-203, Transcript of ubiquitin specific peptidase 39, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP39, Length 2,034 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-203ENST00000409470 RNF148Q8N7C7 305 aa20.34■□□□□ 0.85
USP39-203ENST00000409470 OR4F6Q8NGB9 312 aa20.34■□□□□ 0.85
USP39-203ENST00000409470 RHBDF1Q96CC6 855 aa20.34■□□□□ 0.85
USP39-203ENST00000409470 CCT7Q99832 543 aa20.34■□□□□ 0.85
USP39-203ENST00000409470 RIOK2Q9BVS4 552 aaKnown RBP20.34■□□□□ 0.85
USP39-203ENST00000409470 CD244Q9BZW8 370 aa20.34■□□□□ 0.85
USP39-203ENST00000409470 RDH14Q9HBH5 336 aa20.34■□□□□ 0.85
USP39-203ENST00000409470 OPTCQ9UBM4 332 aa20.34■□□□□ 0.85
USP39-203ENST00000409470 NR5A2O00482 541 aa20.34■□□□□ 0.85
USP39-203ENST00000409470 NVLO15381 856 aaKnown RBP20.34■□□□□ 0.85
USP39-203ENST00000409470 ME2P23368 584 aa20.34■□□□□ 0.85
USP39-203ENST00000409470 RALGDSQ12967 914 aa20.34■□□□□ 0.85
USP39-203ENST00000409470 CEACAM7Q14002 265 aa20.34■□□□□ 0.85
USP39-203ENST00000409470 ZNF284Q2VY69 593 aa20.34■□□□□ 0.85
USP39-203ENST00000409470 OGFOD2Q6N063 350 aa20.34■□□□□ 0.85
USP39-203ENST00000409470 TRAM1L1Q8N609 369 aa20.34■□□□□ 0.85
USP39-203ENST00000409470 PPFIBP2Q8ND30 876 aa20.34■□□□□ 0.85
USP39-203ENST00000409470 GDPD5Q8WTR4 605 aa20.34■□□□□ 0.85
USP39-203ENST00000409470 IGFLR1Q9H665 355 aa20.34■□□□□ 0.85
USP39-203ENST00000409470 MBD1Q9UIS9 605 aaPredicted RBP20.34■□□□□ 0.85
USP39-203ENST00000409470 OTOL1A6NHN0 477 aaPredicted RBP20.33■□□□□ 0.85
USP39-203ENST00000409470 EIF3FO00303 357 aaPredicted RBP20.33■□□□□ 0.85
USP39-203ENST00000409470 ELFN1P0C7U0 828 aa20.33■□□□□ 0.85
USP39-203ENST00000409470 PRR35P0CG20 571 aa20.33■□□□□ 0.85
USP39-203ENST00000409470 MSH3P20585 1137 aa20.33■□□□□ 0.85
USP39-203ENST00000409470 GDF5P43026 501 aa20.33■□□□□ 0.85
USP39-203ENST00000409470 BOP1Q14137 746 aaKnown RBP20.33■□□□□ 0.85
USP39-203ENST00000409470 PARS2Q7L3T8 475 aaKnown RBP20.33■□□□□ 0.85
USP39-203ENST00000409470 MILR1Q7Z6M3 343 aa20.33■□□□□ 0.85
USP39-203ENST00000409470 TMEM79Q9BSE2 394 aa20.33■□□□□ 0.85
USP39-203ENST00000409470 ZSCAN5AQ9BUG6 496 aa20.33■□□□□ 0.85
USP39-203ENST00000409470 SDR39U1Q9NRG7 319 aaPredicted RBP20.33■□□□□ 0.85
USP39-203ENST00000409470 NMRK1Q9NWW6 199 aa20.33■□□□□ 0.85
USP39-203ENST00000409470 LRRC42Q9Y546 428 aa20.33■□□□□ 0.85
USP39-203ENST00000409470 PCDHGA7Q9Y5G6 932 aa20.33■□□□□ 0.85
USP39-203ENST00000409470 C2orf16Q68DN1 1984 aa20.33■□□□□ 0.84
USP39-203ENST00000409470 PRNPP04156 253 aa20.32■□□□□ 0.84
USP39-203ENST00000409470 HLA-EP13747 358 aa20.32■□□□□ 0.84
USP39-203ENST00000409470 XRCC1P18887 633 aaPredicted RBP20.32■□□□□ 0.84
USP39-203ENST00000409470 MMP12P39900 470 aa20.32■□□□□ 0.84
USP39-203ENST00000409470 DIO3P55073 304 aa20.32■□□□□ 0.84
USP39-203ENST00000409470 ACOX1Q15067 660 aa20.32■□□□□ 0.84
USP39-203ENST00000409470 HENMT1Q5T8I9 393 aaKnown RBP20.32■□□□□ 0.84
USP39-203ENST00000409470 IL27RAQ6UWB1 636 aa20.32■□□□□ 0.84
USP39-203ENST00000409470 LAYNQ6UX15 382 aa20.32■□□□□ 0.84
USP39-203ENST00000409470 OR2T11Q8NH01 316 aa20.32■□□□□ 0.84
USP39-203ENST00000409470 RSRC1Q96IZ7 334 aaKnown RBP20.32■□□□□ 0.84
USP39-203ENST00000409470 THG1LQ9NWX6 298 aaKnown RBP20.32■□□□□ 0.84
USP39-203ENST00000409470 BBIP1A8MTZ0 92 aa20.32■□□□□ 0.84
USP39-203ENST00000409470 ANXA5P08758 320 aa20.32■□□□□ 0.84
USP39-203ENST00000409470 HMOX2P30519 316 aa20.32■□□□□ 0.84
USP39-203ENST00000409470 MSX2P35548 267 aaPredicted RBP20.32■□□□□ 0.84
USP39-203ENST00000409470 RPIAP49247 311 aa20.32■□□□□ 0.84
USP39-203ENST00000409470 GTF2A1P52655 376 aaPredicted RBP20.32■□□□□ 0.84
USP39-203ENST00000409470 IRX1P78414 480 aaPredicted RBP20.32■□□□□ 0.84
USP39-203ENST00000409470 FLOT2Q14254 428 aa20.32■□□□□ 0.84
USP39-203ENST00000409470 GRIN2CQ14957 1233 aa20.32■□□□□ 0.84
USP39-203ENST00000409470 SERPINA13PQ6UXR4 307 aa20.32■□□□□ 0.84
USP39-203ENST00000409470 MBOAT1Q6ZNC8 495 aa20.32■□□□□ 0.84
USP39-203ENST00000409470 UBE2R2Q712K3 238 aaPredicted RBP20.32■□□□□ 0.84
USP39-203ENST00000409470 PCYOX1LQ8NBM8 494 aa20.32■□□□□ 0.84
USP39-203ENST00000409470 UBTD2Q8WUN7 234 aa20.32■□□□□ 0.84
USP39-203ENST00000409470 DNAJC9Q8WXX5 260 aa20.32■□□□□ 0.84
USP39-203ENST00000409470 TIFAQ96CG3 184 aa20.32■□□□□ 0.84
USP39-203ENST00000409470 ZNF570Q96NI8 536 aa20.32■□□□□ 0.84
USP39-203ENST00000409470 ARL15Q9NXU5 204 aa20.32■□□□□ 0.84
USP39-203ENST00000409470 BCAP29Q9UHQ4 241 aa20.32■□□□□ 0.84
USP39-203ENST00000409470 SARDHQ9UL12 918 aa20.32■□□□□ 0.84
USP39-203ENST00000409470 ITM2BQ9Y287 266 aa20.32■□□□□ 0.84
USP39-203ENST00000409470 FADS2P1A8MWK0 482 aa20.31■□□□□ 0.84
USP39-203ENST00000409470 K7EPI3 171 aa20.31■□□□□ 0.84
USP39-203ENST00000409470 KPNA5O15131 536 aa20.31■□□□□ 0.84
USP39-203ENST00000409470 MATN4O95460 622 aa20.31■□□□□ 0.84
USP39-203ENST00000409470 CREB5Q02930 508 aa20.31■□□□□ 0.84
USP39-203ENST00000409470 TRAF3Q13114 568 aa20.31■□□□□ 0.84
USP39-203ENST00000409470 GAB4Q2WGN9 574 aa20.31■□□□□ 0.84
USP39-203ENST00000409470 ATP6AP1LQ52LC2 224 aa20.31■□□□□ 0.84
USP39-203ENST00000409470 LIPIQ6XZB0 460 aa20.31■□□□□ 0.84
USP39-203ENST00000409470 TRIM54Q9BYV2 358 aa20.31■□□□□ 0.84
USP39-203ENST00000409470 LMAN2LQ9H0V9 348 aa20.31■□□□□ 0.84
USP39-203ENST00000409470 AIG1Q9NVV5 245 aa20.31■□□□□ 0.84
USP39-203ENST00000409470 GDE1Q9NZC3 331 aa20.31■□□□□ 0.84
USP39-203ENST00000409470 NFKBIL1Q9UBC1 381 aaPredicted RBP20.31■□□□□ 0.84
USP39-203ENST00000409470 SUN2Q9UH99 717 aa20.31■□□□□ 0.84
USP39-203ENST00000409470 MCM8Q9UJA3 840 aa20.31■□□□□ 0.84
USP39-203ENST00000409470 CROTQ9UKG9 612 aa20.31■□□□□ 0.84
USP39-203ENST00000409470 GPR45Q9Y5Y3 372 aa20.31■□□□□ 0.84
USP39-203ENST00000409470 CDH23Q9H251 3354 aa20.31■□□□□ 0.84
USP39-203ENST00000409470 PABPN1LA6NDY0 278 aaKnown RBP20.31■□□□□ 0.84
USP39-203ENST00000409470 E7ENX8 843 aa20.31■□□□□ 0.84
USP39-203ENST00000409470 TRIM38O00635 465 aa20.31■□□□□ 0.84
USP39-203ENST00000409470 ANGPT2O15123 496 aa20.31■□□□□ 0.84
USP39-203ENST00000409470 MAP3K7O43318 606 aa20.31■□□□□ 0.84
USP39-203ENST00000409470 PAPLNO95428 1278 aa20.31■□□□□ 0.84
USP39-203ENST00000409470 C8GP07360 202 aa20.31■□□□□ 0.84
USP39-203ENST00000409470 TCN1P20061 433 aaPredicted RBP20.31■□□□□ 0.84
USP39-203ENST00000409470 HTR6P50406 440 aa20.31■□□□□ 0.84
USP39-203ENST00000409470 ERVK-8P63133 956 aa20.31■□□□□ 0.84
USP39-203ENST00000409470 PLEKHS1Q5SXH7 462 aa20.31■□□□□ 0.84
USP39-203ENST00000409470 ZNF648Q5T619 568 aaPredicted RBP20.31■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms