RNA–Protein interactions for RNA: ENST00000401468.7

VPS53-203, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 1,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-203ENST00000401468 EPB41L4BQ9H329 900 aa9.06□□□□□ -0.96
VPS53-203ENST00000401468 CDC42EP4Q9H3Q1 356 aaKnown RBP9.06□□□□□ -0.96
VPS53-203ENST00000401468 ASB8Q9H765 288 aa9.06□□□□□ -0.96
VPS53-203ENST00000401468 WDR26Q9H7D7 661 aa9.06□□□□□ -0.96
VPS53-203ENST00000401468 TRIM39Q9HCM9 518 aa9.06□□□□□ -0.96
VPS53-203ENST00000401468 MRPL40Q9NQ50 206 aaKnown RBP9.06□□□□□ -0.96
VPS53-203ENST00000401468 ENAMQ9NRM1 1142 aa9.06□□□□□ -0.96
VPS53-203ENST00000401468 NINJ2Q9NZG7 142 aa9.06□□□□□ -0.96
VPS53-203ENST00000401468 MAD1L1Q9Y6D9 718 aa9.06□□□□□ -0.96
VPS53-203ENST00000401468 OAS3Q9Y6K5 1087 aaKnown RBP9.06□□□□□ -0.96
VPS53-203ENST00000401468 DGKBQ9Y6T7 804 aa9.06□□□□□ -0.96
VPS53-203ENST00000401468 HECTD1Q9ULT8 2610 aa9.05□□□□□ -0.96
VPS53-203ENST00000401468 TCRBV9S1A1TA0A576 114 aa9.05□□□□□ -0.96
VPS53-203ENST00000401468 OR51F1A6NGY5 319 aa9.05□□□□□ -0.96
VPS53-203ENST00000401468 PRR19A6NJB7 356 aa9.05□□□□□ -0.96
VPS53-203ENST00000401468 FAM159BA6NKW6 160 aa9.05□□□□□ -0.96
VPS53-203ENST00000401468 CD3EAPO15446 510 aaKnown RBP9.05□□□□□ -0.96
VPS53-203ENST00000401468 VEGFDO43915 354 aa9.05□□□□□ -0.96
VPS53-203ENST00000401468 UGT1A9O60656 530 aa9.05□□□□□ -0.96
VPS53-203ENST00000401468 MAGEC1O60732 1142 aa9.05□□□□□ -0.96
VPS53-203ENST00000401468 DNAJC6O75061 913 aa9.05□□□□□ -0.96
VPS53-203ENST00000401468 IL2RAP01589 272 aa9.05□□□□□ -0.96
VPS53-203ENST00000401468 FUCA1P04066 466 aa9.05□□□□□ -0.96
VPS53-203ENST00000401468 CEACAM5P06731 702 aa9.05□□□□□ -0.96
VPS53-203ENST00000401468 IVLP07476 585 aa9.05□□□□□ -0.96
VPS53-203ENST00000401468 UGT1A6P19224 532 aa9.05□□□□□ -0.96
VPS53-203ENST00000401468 UGT1A1P22309 533 aa9.05□□□□□ -0.96
VPS53-203ENST00000401468 UGT1A4P22310 534 aa9.05□□□□□ -0.96
VPS53-203ENST00000401468 SSTR1P30872 391 aa9.05□□□□□ -0.96
VPS53-203ENST00000401468 UGT1A3P35503 534 aa9.05□□□□□ -0.96
VPS53-203ENST00000401468 UGT1A5P35504 534 aa9.05□□□□□ -0.96
VPS53-203ENST00000401468 TTPAP49638 278 aa9.05□□□□□ -0.96
VPS53-203ENST00000401468 CDKN1CP49918 316 aaPredicted RBP9.05□□□□□ -0.96
VPS53-203ENST00000401468 THOP1P52888 689 aa9.05□□□□□ -0.96
VPS53-203ENST00000401468 PRAMEP78395 509 aa9.05□□□□□ -0.96
VPS53-203ENST00000401468 TMPRSS15P98073 1019 aa9.05□□□□□ -0.96
VPS53-203ENST00000401468 B4GALNT1Q00973 533 aa9.05□□□□□ -0.96
VPS53-203ENST00000401468 NAA30Q147X3 362 aaPredicted RBP9.05□□□□□ -0.96
VPS53-203ENST00000401468 ZNF658BQ4V348 819 aaPredicted RBP9.05□□□□□ -0.96
VPS53-203ENST00000401468 C3orf38Q5JPI3 329 aa9.05□□□□□ -0.96
VPS53-203ENST00000401468 AARS2Q5JTZ9 985 aaKnown RBP9.05□□□□□ -0.96
VPS53-203ENST00000401468 HP1BP3Q5SSJ5 553 aaPredicted RBP9.05□□□□□ -0.96
VPS53-203ENST00000401468 ALS2CLQ60I27 953 aa9.05□□□□□ -0.96
VPS53-203ENST00000401468 NEPROQ6NW34 567 aa9.05□□□□□ -0.96
VPS53-203ENST00000401468 EMBQ6PCB8 327 aa9.05□□□□□ -0.96
VPS53-203ENST00000401468 TRMT10BQ6PF06 316 aaKnown RBP9.05□□□□□ -0.96
VPS53-203ENST00000401468 KIAA0408Q6ZU52 694 aa9.05□□□□□ -0.96
VPS53-203ENST00000401468 MICALCLQ6ZW33 695 aa9.05□□□□□ -0.96
VPS53-203ENST00000401468 TRMT10CQ7L0Y3 403 aaKnown RBP9.05□□□□□ -0.96
VPS53-203ENST00000401468 EFL1Q7Z2Z2 1120 aaKnown RBP9.05□□□□□ -0.96
VPS53-203ENST00000401468 ADGRG6Q86SQ4 1221 aa9.05□□□□□ -0.96
VPS53-203ENST00000401468 KCNMB4Q86W47 210 aa9.05□□□□□ -0.96
VPS53-203ENST00000401468 PARGQ86W56 976 aa9.05□□□□□ -0.96
VPS53-203ENST00000401468 CCDC25Q86WR0 208 aa9.05□□□□□ -0.96
VPS53-203ENST00000401468 TMPRSS12Q86WS5 348 aa9.05□□□□□ -0.96
VPS53-203ENST00000401468 PHYKPLQ8IUZ5 450 aa9.05□□□□□ -0.96
VPS53-203ENST00000401468 PHACTR4Q8IZ21 702 aa9.05□□□□□ -0.96
VPS53-203ENST00000401468 UNC5BQ8IZJ1 945 aa9.05□□□□□ -0.96
VPS53-203ENST00000401468 MREGQ8N565 214 aa9.05□□□□□ -0.96
VPS53-203ENST00000401468 OXR1Q8N573 874 aa9.05□□□□□ -0.96
VPS53-203ENST00000401468 C2CD4AQ8NCU7 369 aaPredicted RBP9.05□□□□□ -0.96
VPS53-203ENST00000401468 MYRIPQ8NFW9 859 aa9.05□□□□□ -0.96
VPS53-203ENST00000401468 CALML6Q8TD86 181 aa9.05□□□□□ -0.96
VPS53-203ENST00000401468 HEXDCQ8WVB3 486 aa9.05□□□□□ -0.96
VPS53-203ENST00000401468 C9orf72Q96LT7 481 aa9.05□□□□□ -0.96
VPS53-203ENST00000401468 FAM167BQ9BTA0 163 aa9.05□□□□□ -0.96
VPS53-203ENST00000401468 LRRC61Q9BV99 259 aa9.05□□□□□ -0.96
VPS53-203ENST00000401468 CLPBQ9H078 707 aa9.05□□□□□ -0.96
VPS53-203ENST00000401468 P2RY12Q9H244 342 aa9.05□□□□□ -0.96
VPS53-203ENST00000401468 RMI1Q9H9A7 625 aa9.05□□□□□ -0.96
VPS53-203ENST00000401468 UGT1A7Q9HAW7 530 aa9.05□□□□□ -0.96
VPS53-203ENST00000401468 UGT1A10Q9HAW8 530 aa9.05□□□□□ -0.96
VPS53-203ENST00000401468 UGT1A8Q9HAW9 530 aa9.05□□□□□ -0.96
VPS53-203ENST00000401468 PHPT1Q9NRX4 125 aaPredicted RBP9.05□□□□□ -0.96
VPS53-203ENST00000401468 CATSPERZQ9NTU4 200 aa9.05□□□□□ -0.96
VPS53-203ENST00000401468 INTS10Q9NVR2 710 aaKnown RBP9.05□□□□□ -0.96
VPS53-203ENST00000401468 ZDHHC3Q9NYG2 299 aa9.05□□□□□ -0.96
VPS53-203ENST00000401468 MARCH4Q9P2E8 410 aaPredicted RBP9.05□□□□□ -0.96
VPS53-203ENST00000401468 GULP1Q9UBP9 304 aa9.05□□□□□ -0.96
VPS53-203ENST00000401468 NOL12Q9UGY1 213 aaKnown RBP eCLIP9.05□□□□□ -0.96
VPS53-203ENST00000401468 APOBEC3BQ9UH17 382 aaKnown RBP9.05□□□□□ -0.96
VPS53-203ENST00000401468 CLCA2Q9UQC9 943 aa9.05□□□□□ -0.96
VPS53-203ENST00000401468 SLC30A1Q9Y6M5 507 aa9.05□□□□□ -0.96
VPS53-203ENST00000401468 V9GYY5 206 aaPredicted RBP9.05□□□□□ -0.96
VPS53-203ENST00000401468 CCDC88CQ9P219 2028 aa9.05□□□□□ -0.96
VPS53-203ENST00000401468 KALRNO60229 2985 aa9.04□□□□□ -0.96
VPS53-203ENST00000401468 A0A1W2PNU3 283 aaPredicted RBP9.04□□□□□ -0.96
VPS53-203ENST00000401468 CCDC78A2IDD5 438 aa9.04□□□□□ -0.96
VPS53-203ENST00000401468 TMEM202A6NGA9 273 aa9.04□□□□□ -0.96
VPS53-203ENST00000401468 CACNB4O00305 520 aaPredicted RBP9.04□□□□□ -0.96
VPS53-203ENST00000401468 YKT6O15498 198 aa9.04□□□□□ -0.96
VPS53-203ENST00000401468 AQP9O43315 295 aa9.04□□□□□ -0.96
VPS53-203ENST00000401468 NUAK1O60285 661 aa9.04□□□□□ -0.96
VPS53-203ENST00000401468 OPA1O60313 960 aa9.04□□□□□ -0.96
VPS53-203ENST00000401468 CSO75390 466 aaKnown RBP9.04□□□□□ -0.96
VPS53-203ENST00000401468 SLC25A14O95258 325 aaPredicted RBP9.04□□□□□ -0.96
VPS53-203ENST00000401468 MT-CO3P00414 261 aa9.04□□□□□ -0.96
VPS53-203ENST00000401468 CSF2P04141 144 aa9.04□□□□□ -0.96
VPS53-203ENST00000401468 PRSS56P0CW18 603 aa9.04□□□□□ -0.96
VPS53-203ENST00000401468 NME1P15531 152 aaKnown RBP9.04□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms