RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 SNX7Q9UNH6 387 aa4.06□□□□□ -1.76
HMGB1-204ENST00000399489 NUDCQ9Y266 331 aa4.06□□□□□ -1.76
HMGB1-204ENST00000399489 MRPL11Q9Y3B7 192 aaKnown RBP4.06□□□□□ -1.76
HMGB1-204ENST00000399489 PEG3Q9GZU2 1588 aa4.06□□□□□ -1.76
HMGB1-204ENST00000399489 SMARCA4P51532 1647 aa4.05□□□□□ -1.76
HMGB1-204ENST00000399489 KAT6AQ92794 2004 aa4.05□□□□□ -1.76
HMGB1-204ENST00000399489 ARHGEF17Q96PE2 2063 aaPredicted RBP4.05□□□□□ -1.76
HMGB1-204ENST00000399489 A0A0B4J293 547 aa4.05□□□□□ -1.76
HMGB1-204ENST00000399489 FAM230AA0A1W2PPH8 454 aa4.05□□□□□ -1.76
HMGB1-204ENST00000399489 A0A1W2PS29 197 aa4.05□□□□□ -1.76
HMGB1-204ENST00000399489 ARHGAP42A6NI28 874 aa4.05□□□□□ -1.76
HMGB1-204ENST00000399489 LRRC3CA6NJW4 275 aa4.05□□□□□ -1.76
HMGB1-204ENST00000399489 MGST3O14880 152 aa4.05□□□□□ -1.76
HMGB1-204ENST00000399489 POLR3GO15318 223 aaPredicted RBP4.05□□□□□ -1.76
HMGB1-204ENST00000399489 OGG1O15527 345 aa4.05□□□□□ -1.76
HMGB1-204ENST00000399489 RNF113AO15541 343 aaKnown RBP4.05□□□□□ -1.76
HMGB1-204ENST00000399489 SUN1O94901 812 aa4.05□□□□□ -1.76
HMGB1-204ENST00000399489 ZWINTO95229 277 aa4.05□□□□□ -1.76
HMGB1-204ENST00000399489 IL1AP01583 271 aa4.05□□□□□ -1.76
HMGB1-204ENST00000399489 TFP02787 698 aa4.05□□□□□ -1.76
HMGB1-204ENST00000399489 PCCBP05166 539 aa4.05□□□□□ -1.76
HMGB1-204ENST00000399489 RHOXF2BP0C7M4 288 aa4.05□□□□□ -1.76
HMGB1-204ENST00000399489 CCDC172P0C7W6 258 aa4.05□□□□□ -1.76
HMGB1-204ENST00000399489 POLR2MP0CAP2 368 aa4.05□□□□□ -1.76
HMGB1-204ENST00000399489 PKMP14618 531 aaKnown RBP4.05□□□□□ -1.76
HMGB1-204ENST00000399489 PFKFB1P16118 471 aa4.05□□□□□ -1.76
HMGB1-204ENST00000399489 CYP11B2P19099 503 aa4.05□□□□□ -1.76
HMGB1-204ENST00000399489 FUT1P19526 365 aa4.05□□□□□ -1.76
HMGB1-204ENST00000399489 CDH3P22223 829 aa4.05□□□□□ -1.76
HMGB1-204ENST00000399489 TYK2P29597 1187 aa4.05□□□□□ -1.76
HMGB1-204ENST00000399489 ALDH4A1P30038 563 aa4.05□□□□□ -1.76
HMGB1-204ENST00000399489 MAGEA8P43361 318 aa4.05□□□□□ -1.76
HMGB1-204ENST00000399489 CENPAP49450 140 aa4.05□□□□□ -1.76
HMGB1-204ENST00000399489 VPS41P49754 854 aa4.05□□□□□ -1.76
HMGB1-204ENST00000399489 ARSEP51690 589 aa4.05□□□□□ -1.76
HMGB1-204ENST00000399489 SHC2P98077 582 aa4.05□□□□□ -1.76
HMGB1-204ENST00000399489 PLD1Q13393 1074 aa4.05□□□□□ -1.76
HMGB1-204ENST00000399489 DRAP1Q14919 205 aaPredicted RBP4.05□□□□□ -1.76
HMGB1-204ENST00000399489 RPE65Q16518 533 aa4.05□□□□□ -1.76
HMGB1-204ENST00000399489 UGP2Q16851 508 aa4.05□□□□□ -1.76
HMGB1-204ENST00000399489 CDO1Q16878 200 aa4.05□□□□□ -1.76
HMGB1-204ENST00000399489 IQCCQ4KMZ1 466 aa4.05□□□□□ -1.76
HMGB1-204ENST00000399489 LRIF1Q5T3J3 769 aa4.05□□□□□ -1.76
HMGB1-204ENST00000399489 AP1ARQ63HQ0 302 aa4.05□□□□□ -1.76
HMGB1-204ENST00000399489 SFRP4Q6FHJ7 346 aaPredicted RBP4.05□□□□□ -1.76
HMGB1-204ENST00000399489 VWA1Q6PCB0 445 aa4.05□□□□□ -1.76
HMGB1-204ENST00000399489 MACC1Q6ZN28 852 aa4.05□□□□□ -1.76
HMGB1-204ENST00000399489 MICALCLQ6ZW33 695 aa4.05□□□□□ -1.76
HMGB1-204ENST00000399489 TAS2R42Q7RTR8 314 aa4.05□□□□□ -1.76
HMGB1-204ENST00000399489 PRSS42Q7Z5A4 293 aa4.05□□□□□ -1.76
HMGB1-204ENST00000399489 NEK8Q86SG6 692 aa4.05□□□□□ -1.76
HMGB1-204ENST00000399489 ADAMTSL2Q86TH1 951 aa4.05□□□□□ -1.76
HMGB1-204ENST00000399489 GLCCI1Q86VQ1 547 aa4.05□□□□□ -1.76
HMGB1-204ENST00000399489 TDRPQ86YL5 185 aa4.05□□□□□ -1.76
HMGB1-204ENST00000399489 RASAL3Q86YV0 1011 aa4.05□□□□□ -1.76
HMGB1-204ENST00000399489 FAM219AQ8IW50 185 aa4.05□□□□□ -1.76
HMGB1-204ENST00000399489 ADGRF3Q8IZF5 1079 aa4.05□□□□□ -1.76
HMGB1-204ENST00000399489 ARL14Q8N4G2 192 aa4.05□□□□□ -1.76
HMGB1-204ENST00000399489 EIF1ADQ8N9N8 165 aaKnown RBP4.05□□□□□ -1.76
HMGB1-204ENST00000399489 SCAIQ8N9R8 606 aa4.05□□□□□ -1.76
HMGB1-204ENST00000399489 DNAAF1Q8NEP3 725 aa4.05□□□□□ -1.76
HMGB1-204ENST00000399489 ATG4AQ8WYN0 398 aa4.05□□□□□ -1.76
HMGB1-204ENST00000399489 TMEM125Q96AQ2 219 aa4.05□□□□□ -1.76
HMGB1-204ENST00000399489 NXNL1Q96CM4 212 aa4.05□□□□□ -1.76
HMGB1-204ENST00000399489 PIWIL1Q96J94 861 aaKnown RBP4.05□□□□□ -1.76
HMGB1-204ENST00000399489 PGBD1Q96JS3 809 aa4.05□□□□□ -1.76
HMGB1-204ENST00000399489 PANX3Q96QZ0 392 aa4.05□□□□□ -1.76
HMGB1-204ENST00000399489 RHOXF2Q9BQY4 288 aa4.05□□□□□ -1.76
HMGB1-204ENST00000399489 IQCGQ9H095 443 aaKnown RBP4.05□□□□□ -1.76
HMGB1-204ENST00000399489 RAB17Q9H0T7 212 aa4.05□□□□□ -1.76
HMGB1-204ENST00000399489 CARD9Q9H257 536 aa4.05□□□□□ -1.76
HMGB1-204ENST00000399489 MINDY3Q9H8M7 445 aa4.05□□□□□ -1.76
HMGB1-204ENST00000399489 SRD5A3Q9H8P0 318 aa4.05□□□□□ -1.76
HMGB1-204ENST00000399489 FANCEQ9HB96 536 aa4.05□□□□□ -1.76
HMGB1-204ENST00000399489 GPN1Q9HCN4 374 aaPredicted RBP4.05□□□□□ -1.76
HMGB1-204ENST00000399489 HSFX1Q9UBD0 423 aa4.05□□□□□ -1.76
HMGB1-204ENST00000399489 ARPP21Q9UBL0 812 aaPredicted RBP4.05□□□□□ -1.76
HMGB1-204ENST00000399489 CTNNAL1Q9UBT7 734 aa4.05□□□□□ -1.76
HMGB1-204ENST00000399489 ATP6V1HQ9UI12 483 aa4.05□□□□□ -1.76
HMGB1-204ENST00000399489 A0A087WZY1 265 aa4.04□□□□□ -1.76
HMGB1-204ENST00000399489 PRAMEF33A0A0G2JMD5 474 aa4.04□□□□□ -1.76
HMGB1-204ENST00000399489 CBY3A6NI87 242 aa4.04□□□□□ -1.76
HMGB1-204ENST00000399489 TMCO5BA8MYB1 307 aa4.04□□□□□ -1.76
HMGB1-204ENST00000399489 E9PBE3 544 aa4.04□□□□□ -1.76
HMGB1-204ENST00000399489 PPM1DO15297 605 aa4.04□□□□□ -1.76
HMGB1-204ENST00000399489 SEC14L5O43304 696 aa4.04□□□□□ -1.76
HMGB1-204ENST00000399489 PRAMEF10O60809 474 aa4.04□□□□□ -1.76
HMGB1-204ENST00000399489 MOSPD3O75425 235 aa4.04□□□□□ -1.76
HMGB1-204ENST00000399489 SCGB2A1O75556 95 aa4.04□□□□□ -1.76
HMGB1-204ENST00000399489 FGF4P08620 206 aa4.04□□□□□ -1.76
HMGB1-204ENST00000399489 SBK2P0C263 348 aa4.04□□□□□ -1.76
HMGB1-204ENST00000399489 LINGO3P0C6S8 592 aa4.04□□□□□ -1.76
HMGB1-204ENST00000399489 EBLN1P0CF75 366 aa4.04□□□□□ -1.76
HMGB1-204ENST00000399489 CSF2RAP15509 400 aa4.04□□□□□ -1.76
HMGB1-204ENST00000399489 TCF4P15884 667 aa4.04□□□□□ -1.76
HMGB1-204ENST00000399489 ZNF182P17025 639 aaPredicted RBP4.04□□□□□ -1.76
HMGB1-204ENST00000399489 DRD4P21917 467 aa4.04□□□□□ -1.76
HMGB1-204ENST00000399489 CORO1AP31146 461 aaKnown RBP4.04□□□□□ -1.76
HMGB1-204ENST00000399489 MCM5P33992 734 aa4.04□□□□□ -1.76
HMGB1-204ENST00000399489 RDXP35241 583 aaKnown RBP4.04□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms