RNA–Protein interactions for RNA: ENST00000397545.8

CCDC40-204, Transcript of coiled-coil domain containing 40, humanhuman

APPRIS P3 TSL 5 BASIC

Gene CCDC40, Length 4,294 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-204ENST00000397545 ATL1Q8WXF7 558 aa10.62□□□□□ -0.71
CCDC40-204ENST00000397545 GTPBP3Q969Y2 492 aaKnown RBP10.62□□□□□ -0.71
CCDC40-204ENST00000397545 LRRC58Q96CX6 371 aa10.62□□□□□ -0.71
CCDC40-204ENST00000397545 CCDC3Q9BQI4 270 aa10.62□□□□□ -0.71
CCDC40-204ENST00000397545 XYLT2Q9H1B5 865 aa10.62□□□□□ -0.71
CCDC40-204ENST00000397545 CCNB1IP1Q9NPC3 277 aa10.62□□□□□ -0.71
CCDC40-204ENST00000397545 IFT80Q9P2H3 777 aaPredicted RBP10.62□□□□□ -0.71
CCDC40-204ENST00000397545 CLEC4AQ9UMR7 237 aa10.62□□□□□ -0.71
CCDC40-204ENST00000397545 FCF1Q9Y324 198 aaKnown RBP10.62□□□□□ -0.71
CCDC40-204ENST00000397545 MAP4K5Q9Y4K4 846 aa10.62□□□□□ -0.71
CCDC40-204ENST00000397545 FER1L6Q2WGJ9 1857 aa10.62□□□□□ -0.71
CCDC40-204ENST00000397545 GLYATL1P3A0A0U1RQE8 302 aa10.62□□□□□ -0.71
CCDC40-204ENST00000397545 ZBTB42B2RXF5 422 aa10.62□□□□□ -0.71
CCDC40-204ENST00000397545 MATN2O00339 956 aa10.62□□□□□ -0.71
CCDC40-204ENST00000397545 FPGTO14772 594 aa10.62□□□□□ -0.71
CCDC40-204ENST00000397545 ARPC2O15144 300 aa10.62□□□□□ -0.71
CCDC40-204ENST00000397545 CLDN11O75508 207 aa10.62□□□□□ -0.71
CCDC40-204ENST00000397545 PDE9AO76083 593 aa10.62□□□□□ -0.71
CCDC40-204ENST00000397545 GPR1P46091 355 aa10.62□□□□□ -0.71
CCDC40-204ENST00000397545 GSK3BP49841 420 aa10.62□□□□□ -0.71
CCDC40-204ENST00000397545 PARP15Q460N3 678 aa10.62□□□□□ -0.71
CCDC40-204ENST00000397545 FNDC3BQ53EP0 1204 aaKnown RBP10.62□□□□□ -0.71
CCDC40-204ENST00000397545 TRIM40Q6P9F5 258 aa10.62□□□□□ -0.71
CCDC40-204ENST00000397545 PPCDCQ96CD2 204 aa10.62□□□□□ -0.71
CCDC40-204ENST00000397545 FBXL20Q96IG2 436 aa10.62□□□□□ -0.71
CCDC40-204ENST00000397545 FCRL5Q96RD9 977 aa10.62□□□□□ -0.71
CCDC40-204ENST00000397545 TCF25Q9BQ70 676 aa10.62□□□□□ -0.71
CCDC40-204ENST00000397545 SGK2Q9HBY8 427 aa10.62□□□□□ -0.71
CCDC40-204ENST00000397545 ADAMTS6Q9UKP5 1117 aa10.62□□□□□ -0.71
CCDC40-204ENST00000397545 VPS4AQ9UN37 437 aa10.62□□□□□ -0.71
CCDC40-204ENST00000397545 ANGPT4Q9Y264 503 aa10.62□□□□□ -0.71
CCDC40-204ENST00000397545 ARID1BQ8NFD5 2236 aaPredicted RBP10.62□□□□□ -0.71
CCDC40-204ENST00000397545 TBC1D3BA6NDS4 549 aa10.62□□□□□ -0.71
CCDC40-204ENST00000397545 CXCR6O00574 342 aa10.62□□□□□ -0.71
CCDC40-204ENST00000397545 IL1BP01584 269 aa10.62□□□□□ -0.71
CCDC40-204ENST00000397545 NR2F6P10588 404 aa10.62□□□□□ -0.71
CCDC40-204ENST00000397545 RXRGP48443 463 aa10.62□□□□□ -0.71
CCDC40-204ENST00000397545 DGKEP52429 567 aa10.62□□□□□ -0.71
CCDC40-204ENST00000397545 MTA1Q13330 715 aa10.62□□□□□ -0.71
CCDC40-204ENST00000397545 LAPTM5Q13571 262 aa10.62□□□□□ -0.71
CCDC40-204ENST00000397545 LAPTM4AQ15012 233 aa10.62□□□□□ -0.71
CCDC40-204ENST00000397545 FLCNQ8NFG4 579 aa10.62□□□□□ -0.71
CCDC40-204ENST00000397545 OR4A15Q8NGL6 344 aa10.62□□□□□ -0.71
CCDC40-204ENST00000397545 BRSK1Q8TDC3 778 aa10.62□□□□□ -0.71
CCDC40-204ENST00000397545 SLC13A3Q8WWT9 602 aa10.62□□□□□ -0.71
CCDC40-204ENST00000397545 CLP1Q92989 425 aaKnown RBP10.62□□□□□ -0.71
CCDC40-204ENST00000397545 VMP1Q96GC9 406 aa10.62□□□□□ -0.71
CCDC40-204ENST00000397545 ZNF778Q96MU6 729 aa10.62□□□□□ -0.71
CCDC40-204ENST00000397545 MTERF1Q99551 399 aaKnown RBP10.62□□□□□ -0.71
CCDC40-204ENST00000397545 MRPL9Q9BYD2 267 aaKnown RBP10.62□□□□□ -0.71
CCDC40-204ENST00000397545 CLEC4MQ9H2X3 399 aaPredicted RBP10.62□□□□□ -0.71
CCDC40-204ENST00000397545 CTPS2Q9NRF8 586 aa10.62□□□□□ -0.71
CCDC40-204ENST00000397545 MRPL17Q9NRX2 175 aaKnown RBP10.62□□□□□ -0.71
CCDC40-204ENST00000397545 INTS7Q9NVH2 962 aaKnown RBP10.62□□□□□ -0.71
CCDC40-204ENST00000397545 DOCK1Q14185 1865 aa10.61□□□□□ -0.71
CCDC40-204ENST00000397545 CDC7O00311 574 aa10.61□□□□□ -0.71
CCDC40-204ENST00000397545 HAT1O14929 419 aa10.61□□□□□ -0.71
CCDC40-204ENST00000397545 AIREO43918 545 aa10.61□□□□□ -0.71
CCDC40-204ENST00000397545 NDUFS2O75306 463 aa10.61□□□□□ -0.71
CCDC40-204ENST00000397545 PSIP1O75475 530 aaKnown RBP10.61□□□□□ -0.71
CCDC40-204ENST00000397545 DIRAS1O95057 198 aa10.61□□□□□ -0.71
CCDC40-204ENST00000397545 IMPDH1P20839 514 aa10.61□□□□□ -0.71
CCDC40-204ENST00000397545 PRKACGP22612 351 aa10.61□□□□□ -0.71
CCDC40-204ENST00000397545 GABRR2P28476 465 aa10.61□□□□□ -0.71
CCDC40-204ENST00000397545 MANFP55145 182 aaKnown RBP10.61□□□□□ -0.71
CCDC40-204ENST00000397545 RHDQ02161 417 aa10.61□□□□□ -0.71
CCDC40-204ENST00000397545 CHIT1Q13231 466 aa10.61□□□□□ -0.71
CCDC40-204ENST00000397545 SLC9A5Q14940 896 aa10.61□□□□□ -0.71
CCDC40-204ENST00000397545 KLHL12Q53G59 568 aa10.61□□□□□ -0.71
CCDC40-204ENST00000397545 AKAP14Q86UN6 197 aa10.61□□□□□ -0.71
CCDC40-204ENST00000397545 SERPINA9Q86WD7 417 aa10.61□□□□□ -0.71
CCDC40-204ENST00000397545 RELL1Q8IUW5 271 aa10.61□□□□□ -0.71
CCDC40-204ENST00000397545 TP53INP2Q8IXH6 220 aa10.61□□□□□ -0.71
CCDC40-204ENST00000397545 SIX5Q8N196 739 aa10.61□□□□□ -0.71
CCDC40-204ENST00000397545 TRIM63Q969Q1 353 aa10.61□□□□□ -0.71
CCDC40-204ENST00000397545 NSMCE3Q96MG7 304 aa10.61□□□□□ -0.71
CCDC40-204ENST00000397545 CITED4Q96RK1 184 aa10.61□□□□□ -0.71
CCDC40-204ENST00000397545 ACBD6Q9BR61 282 aa10.61□□□□□ -0.71
CCDC40-204ENST00000397545 BCO2Q9BYV7 579 aa10.61□□□□□ -0.71
CCDC40-204ENST00000397545 KRCC1Q9NPI7 259 aaPredicted RBP10.61□□□□□ -0.71
CCDC40-204ENST00000397545 NKIRAS2Q9NYR9 191 aa10.61□□□□□ -0.71
CCDC40-204ENST00000397545 SSR3Q9UNL2 185 aa10.61□□□□□ -0.71
CCDC40-204ENST00000397545 ZFP37Q9Y6Q3 630 aaPredicted RBP10.61□□□□□ -0.71
CCDC40-204ENST00000397545 IRAK2O43187 625 aa10.61□□□□□ -0.71
CCDC40-204ENST00000397545 SNX4O95219 450 aa10.61□□□□□ -0.71
CCDC40-204ENST00000397545 CLDN9O95484 217 aa10.61□□□□□ -0.71
CCDC40-204ENST00000397545 ITGA2P17301 1181 aa10.61□□□□□ -0.71
CCDC40-204ENST00000397545 ENTPD1P49961 510 aa10.61□□□□□ -0.71
CCDC40-204ENST00000397545 ENPEPQ07075 957 aa10.61□□□□□ -0.71
CCDC40-204ENST00000397545 SGCGQ13326 291 aa10.61□□□□□ -0.71
CCDC40-204ENST00000397545 QPRTQ15274 297 aa10.61□□□□□ -0.71
CCDC40-204ENST00000397545 RNASE12Q5GAN4 147 aaKnown RBP10.61□□□□□ -0.71
CCDC40-204ENST00000397545 KRT74Q7RTS7 529 aa10.61□□□□□ -0.71
CCDC40-204ENST00000397545 CRYBG2Q8N1P7 616 aa10.61□□□□□ -0.71
CCDC40-204ENST00000397545 CLDN19Q8N6F1 224 aa10.61□□□□□ -0.71
CCDC40-204ENST00000397545 HJURPQ8NCD3 748 aaPredicted RBP10.61□□□□□ -0.71
CCDC40-204ENST00000397545 USP7Q93009 1102 aa10.61□□□□□ -0.71
CCDC40-204ENST00000397545 ZBTB26Q9HCK0 441 aa10.61□□□□□ -0.71
CCDC40-204ENST00000397545 CNTN3Q9P232 1028 aa10.61□□□□□ -0.71
CCDC40-204ENST00000397545 PTPRZ1P23471 2315 aaPredicted RBP10.61□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms