RNA–Protein interactions for RNA: ENST00000382723.4

MSX1-201, Transcript of msh homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSX1, Length 1,939 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1-201ENST00000382723 RPS27LQ71UM5 84 aaKnown RBP26.32■■□□□ 1.8
MSX1-201ENST00000382723 PPP4R1Q8TF05 950 aa26.32■■□□□ 1.8
MSX1-201ENST00000382723 CLDN23Q96B33 292 aa26.32■■□□□ 1.8
MSX1-201ENST00000382723 SORT1Q99523 831 aa26.32■■□□□ 1.8
MSX1-201ENST00000382723 GPR34Q9UPC5 381 aa26.32■■□□□ 1.8
MSX1-201ENST00000382723 SIT1Q9Y3P8 196 aa26.32■■□□□ 1.8
MSX1-201ENST00000382723 EIF3FO00303 357 aaPredicted RBP26.31■■□□□ 1.8
MSX1-201ENST00000382723 NUAK1O60285 661 aa26.31■■□□□ 1.8
MSX1-201ENST00000382723 POP7O75817 140 aaKnown RBP26.31■■□□□ 1.8
MSX1-201ENST00000382723 MYCLP1P12525 358 aaPredicted RBP26.31■■□□□ 1.8
MSX1-201ENST00000382723 NFKB2Q00653 900 aa26.31■■□□□ 1.8
MSX1-201ENST00000382723 MTAPQ13126 283 aa26.31■■□□□ 1.8
MSX1-201ENST00000382723 RAB44Q7Z6P3 723 aaPredicted RBP26.31■■□□□ 1.8
MSX1-201ENST00000382723 SPEM1Q8N4L4 309 aa26.31■■□□□ 1.8
MSX1-201ENST00000382723 FAM160A2Q8N612 972 aaPredicted RBP26.31■■□□□ 1.8
MSX1-201ENST00000382723 APOOQ9BUR5 198 aa26.31■■□□□ 1.8
MSX1-201ENST00000382723 CCDC189A1A4V9 331 aa26.31■■□□□ 1.8
MSX1-201ENST00000382723 SNX2O60749 519 aa26.31■■□□□ 1.8
MSX1-201ENST00000382723 CHRNGP07510 517 aa26.31■■□□□ 1.8
MSX1-201ENST00000382723 IMPDH1P20839 514 aa26.31■■□□□ 1.8
MSX1-201ENST00000382723 RCN2Q14257 317 aa26.31■■□□□ 1.8
MSX1-201ENST00000382723 CFAP206Q8IYR0 622 aa26.31■■□□□ 1.8
MSX1-201ENST00000382723 DLG3Q92796 817 aa26.31■■□□□ 1.8
MSX1-201ENST00000382723 DRC3Q9H069 523 aa26.31■■□□□ 1.8
MSX1-201ENST00000382723 GULP1Q9UBP9 304 aa26.31■■□□□ 1.8
MSX1-201ENST00000382723 DNAJC16Q9Y2G8 782 aa26.31■■□□□ 1.8
MSX1-201ENST00000382723 POM121BA6NF01 834 aa26.3■■□□□ 1.8
MSX1-201ENST00000382723 LRRC14BA6NHZ5 514 aa26.3■■□□□ 1.8
MSX1-201ENST00000382723 SLCO2B1O94956 709 aa26.3■■□□□ 1.8
MSX1-201ENST00000382723 FSBPO95073 299 aa26.3■■□□□ 1.8
MSX1-201ENST00000382723 SIX3O95343 332 aaPredicted RBP26.3■■□□□ 1.8
MSX1-201ENST00000382723 TROVE2P10155 538 aaKnown RBP eCLIP26.3■■□□□ 1.8
MSX1-201ENST00000382723 PHKG1Q16816 387 aa26.3■■□□□ 1.8
MSX1-201ENST00000382723 PPP1R3AQ16821 1122 aa26.3■■□□□ 1.8
MSX1-201ENST00000382723 GPR174Q9BXC1 333 aa26.3■■□□□ 1.8
MSX1-201ENST00000382723 SHCBP1LQ9BZQ2 653 aa26.3■■□□□ 1.8
MSX1-201ENST00000382723 DOCK9Q9BZ29 2069 aa26.29■■□□□ 1.8
MSX1-201ENST00000382723 SLC5A10A0PJK1 596 aa26.29■■□□□ 1.8
MSX1-201ENST00000382723 CHUKO15111 745 aa26.29■■□□□ 1.8
MSX1-201ENST00000382723 APBB3O95704 486 aa26.29■■□□□ 1.8
MSX1-201ENST00000382723 GUCA1CO95843 209 aa26.29■■□□□ 1.8
MSX1-201ENST00000382723 MPC1LP0DKB6 136 aa26.29■■□□□ 1.8
MSX1-201ENST00000382723 CD6P30203 668 aa26.29■■□□□ 1.8
MSX1-201ENST00000382723 OXTRP30559 389 aa26.29■■□□□ 1.8
MSX1-201ENST00000382723 HERVK_113P63132 956 aa26.29■■□□□ 1.8
MSX1-201ENST00000382723 ARL13AQ5H913 290 aaPredicted RBP26.29■■□□□ 1.8
MSX1-201ENST00000382723 ZNF678Q5SXM1 525 aa26.29■■□□□ 1.8
MSX1-201ENST00000382723 CACNA2D3Q8IZS8 1091 aa26.29■■□□□ 1.8
MSX1-201ENST00000382723 NECAB3Q96P71 396 aaPredicted RBP26.29■■□□□ 1.8
MSX1-201ENST00000382723 ERVK-6Q9BXR3 956 aa26.29■■□□□ 1.8
MSX1-201ENST00000382723 TRIM55Q9BYV6 548 aa26.29■■□□□ 1.8
MSX1-201ENST00000382723 WSB2Q9NYS7 404 aaPredicted RBP26.29■■□□□ 1.8
MSX1-201ENST00000382723 ZNHIT2Q9UHR6 403 aa26.29■■□□□ 1.8
MSX1-201ENST00000382723 DCTN4Q9UJW0 460 aa26.29■■□□□ 1.8
MSX1-201ENST00000382723 OARD1Q9Y530 152 aa26.29■■□□□ 1.8
MSX1-201ENST00000382723 H0Y8X5 98 aa26.29■■□□□ 1.8
MSX1-201ENST00000382723 FPGTO14772 594 aa26.29■■□□□ 1.8
MSX1-201ENST00000382723 ZNF217O75362 1048 aa26.29■■□□□ 1.8
MSX1-201ENST00000382723 SUPT7LO94864 414 aa26.29■■□□□ 1.8
MSX1-201ENST00000382723 HNRNPA2B1P22626 353 aaKnown RBP26.29■■□□□ 1.8
MSX1-201ENST00000382723 PDHA2P29803 388 aa26.29■■□□□ 1.8
MSX1-201ENST00000382723 ABRQ12979 859 aa26.29■■□□□ 1.8
MSX1-201ENST00000382723 ZNF658BQ4V348 819 aaPredicted RBP26.29■■□□□ 1.8
MSX1-201ENST00000382723 C11orf96Q7Z7L8 435 aa26.29■■□□□ 1.8
MSX1-201ENST00000382723 LRRTM4Q86VH4 590 aa26.29■■□□□ 1.8
MSX1-201ENST00000382723 CCDC197Q8NCU1 140 aa26.29■■□□□ 1.8
MSX1-201ENST00000382723 RFWD2Q8NHY2 731 aa26.29■■□□□ 1.8
MSX1-201ENST00000382723 AGR3Q8TD06 166 aa26.29■■□□□ 1.8
MSX1-201ENST00000382723 L3HYPDHQ96EM0 354 aa26.29■■□□□ 1.8
MSX1-201ENST00000382723 LINC00615Q96LM1 132 aaPredicted RBP26.29■■□□□ 1.8
MSX1-201ENST00000382723 EBF2Q9HAK2 575 aa26.29■■□□□ 1.8
MSX1-201ENST00000382723 TM7SF3Q9NS93 570 aa26.29■■□□□ 1.8
MSX1-201ENST00000382723 NUDT4Q9NZJ9 180 aa26.29■■□□□ 1.8
MSX1-201ENST00000382723 CACNB4O00305 520 aaPredicted RBP26.28■■□□□ 1.8
MSX1-201ENST00000382723 FFAR2O15552 330 aa26.28■■□□□ 1.8
MSX1-201ENST00000382723 NPHS1O60500 1241 aa26.28■■□□□ 1.8
MSX1-201ENST00000382723 EEF1DP29692 281 aaKnown RBP26.28■■□□□ 1.8
MSX1-201ENST00000382723 ZXDAP98168 799 aa26.28■■□□□ 1.8
MSX1-201ENST00000382723 KIAA0895LQ68EN5 471 aa26.28■■□□□ 1.8
MSX1-201ENST00000382723 UBE2R2Q712K3 238 aaPredicted RBP26.28■■□□□ 1.8
MSX1-201ENST00000382723 DENND6BQ8NEG7 585 aa26.28■■□□□ 1.8
MSX1-201ENST00000382723 CFAP61Q8NHU2 1237 aa26.28■■□□□ 1.8
MSX1-201ENST00000382723 GLMNQ92990 594 aa26.28■■□□□ 1.8
MSX1-201ENST00000382723 PNPOQ9NVS9 261 aa26.28■■□□□ 1.8
MSX1-201ENST00000382723 MOSPD1Q9UJG1 213 aa26.28■■□□□ 1.8
MSX1-201ENST00000382723 GRID2O43424 1007 aa26.27■■□□□ 1.8
MSX1-201ENST00000382723 LATO43561 262 aa26.27■■□□□ 1.8
MSX1-201ENST00000382723 S100BP04271 92 aaPredicted RBP26.27■■□□□ 1.8
MSX1-201ENST00000382723 IGHV4-34P06331 123 aa26.27■■□□□ 1.8
MSX1-201ENST00000382723 RPS9P46781 194 aaKnown RBP26.27■■□□□ 1.8
MSX1-201ENST00000382723 AGTR2P50052 363 aa26.27■■□□□ 1.8
MSX1-201ENST00000382723 ARHGAP8P85298 464 aa26.27■■□□□ 1.8
MSX1-201ENST00000382723 UNC50Q53HI1 259 aa26.27■■□□□ 1.8
MSX1-201ENST00000382723 LSMEM2Q8N112 164 aa26.27■■□□□ 1.8
MSX1-201ENST00000382723 ZNF781Q8N8C0 355 aa26.27■■□□□ 1.8
MSX1-201ENST00000382723 OR2L2Q8NH16 312 aa26.27■■□□□ 1.8
MSX1-201ENST00000382723 ASB11Q8WXH4 323 aa26.27■■□□□ 1.8
MSX1-201ENST00000382723 CNDP1Q96KN2 507 aa26.27■■□□□ 1.8
MSX1-201ENST00000382723 COG4Q9H9E3 785 aa26.27■■□□□ 1.8
MSX1-201ENST00000382723 LIN7AO14910 233 aaPredicted RBP26.27■■□□□ 1.8
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms