RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 PPP3CCP48454 512 aa13.16□□□□□ -0.3
CCDC3-202ENST00000378839 PLIN5Q00G26 463 aa13.16□□□□□ -0.3
CCDC3-202ENST00000378839 BCL2L1Q07817 233 aa13.16□□□□□ -0.3
CCDC3-202ENST00000378839 KIAA0040Q15053 153 aa13.16□□□□□ -0.3
CCDC3-202ENST00000378839 ARHGAP22Q7Z5H3 698 aa13.16□□□□□ -0.3
CCDC3-202ENST00000378839 SNX20Q7Z614 316 aa13.16□□□□□ -0.3
CCDC3-202ENST00000378839 ZFAND4Q86XD8 727 aa13.16□□□□□ -0.3
CCDC3-202ENST00000378839 CBR4Q8N4T8 237 aa13.16□□□□□ -0.3
CCDC3-202ENST00000378839 PDPRQ8NCN5 879 aa13.16□□□□□ -0.3
CCDC3-202ENST00000378839 CLPBQ9H078 707 aa13.16□□□□□ -0.3
CCDC3-202ENST00000378839 RPF2Q9H7B2 306 aaKnown RBP13.16□□□□□ -0.3
CCDC3-202ENST00000378839 FFAR3O14843 346 aa13.16□□□□□ -0.3
CCDC3-202ENST00000378839 GPR42O15529 346 aa13.16□□□□□ -0.3
CCDC3-202ENST00000378839 LHCGRP22888 699 aa13.16□□□□□ -0.3
CCDC3-202ENST00000378839 RPS3P23396 243 aaKnown RBP eCLIP13.16□□□□□ -0.3
CCDC3-202ENST00000378839 MAP7D1Q3KQU3 841 aa13.16□□□□□ -0.3
CCDC3-202ENST00000378839 PPP4R4Q6NUP7 873 aa13.16□□□□□ -0.3
CCDC3-202ENST00000378839 PRMT9Q6P2P2 845 aa13.16□□□□□ -0.3
CCDC3-202ENST00000378839 CRTC1Q6UUV9 634 aa13.16□□□□□ -0.3
CCDC3-202ENST00000378839 CMTM8Q8IZV2 173 aa13.16□□□□□ -0.3
CCDC3-202ENST00000378839 STK40Q8N2I9 435 aa13.16□□□□□ -0.3
CCDC3-202ENST00000378839 ZNF513Q8N8E2 541 aaPredicted RBP13.16□□□□□ -0.3
CCDC3-202ENST00000378839 APOL5Q9BWW9 433 aa13.16□□□□□ -0.3
CCDC3-202ENST00000378839 TRIM54Q9BYV2 358 aa13.16□□□□□ -0.3
CCDC3-202ENST00000378839 Q9H521 79 aa13.16□□□□□ -0.3
CCDC3-202ENST00000378839 HEBP1Q9NRV9 189 aa13.16□□□□□ -0.3
CCDC3-202ENST00000378839 MRPL17Q9NRX2 175 aaKnown RBP13.16□□□□□ -0.3
CCDC3-202ENST00000378839 GID8Q9NWU2 228 aa13.16□□□□□ -0.3
CCDC3-202ENST00000378839 TBX21Q9UL17 535 aa13.16□□□□□ -0.3
CCDC3-202ENST00000378839 TMPRSS11EQ9UL52 423 aa13.16□□□□□ -0.3
CCDC3-202ENST00000378839 PCDHB1Q9Y5F3 818 aa13.16□□□□□ -0.3
CCDC3-202ENST00000378839 PLXNB3Q9ULL4 1909 aa13.15□□□□□ -0.3
CCDC3-202ENST00000378839 C5orf42Q9H799 3197 aa13.15□□□□□ -0.3
CCDC3-202ENST00000378839 AQP12BA6NM10 295 aa13.15□□□□□ -0.3
CCDC3-202ENST00000378839 CLPTM1O96005 669 aa13.15□□□□□ -0.3
CCDC3-202ENST00000378839 EPORP19235 508 aa13.15□□□□□ -0.3
CCDC3-202ENST00000378839 ARL1P40616 181 aaPredicted RBP13.15□□□□□ -0.3
CCDC3-202ENST00000378839 GRIK2Q13002 908 aa13.15□□□□□ -0.3
CCDC3-202ENST00000378839 ATP6AP1LQ52LC2 224 aa13.15□□□□□ -0.3
CCDC3-202ENST00000378839 IRAK1BP1Q5VVH5 260 aa13.15□□□□□ -0.3
CCDC3-202ENST00000378839 CNKSR3Q6P9H4 555 aa13.15□□□□□ -0.3
CCDC3-202ENST00000378839 ZBTB49Q6ZSB9 765 aa13.15□□□□□ -0.3
CCDC3-202ENST00000378839 FRA10AC1Q70Z53 315 aa13.15□□□□□ -0.3
CCDC3-202ENST00000378839 DDX53Q86TM3 631 aaKnown RBP13.15□□□□□ -0.3
CCDC3-202ENST00000378839 PTRH1Q86Y79 214 aaKnown RBP13.15□□□□□ -0.3
CCDC3-202ENST00000378839 AQP12AQ8IXF9 295 aa13.15□□□□□ -0.3
CCDC3-202ENST00000378839 POLR3HQ9Y535 204 aaPredicted RBP13.15□□□□□ -0.3
CCDC3-202ENST00000378839 MYOFQ9NZM1 2061 aa13.15□□□□□ -0.3
CCDC3-202ENST00000378839 GLYATL1P3A0A0U1RQE8 302 aa13.15□□□□□ -0.3
CCDC3-202ENST00000378839 A0A1W2PRU2 124 aa13.15□□□□□ -0.3
CCDC3-202ENST00000378839 FAM234BA2RU67 622 aa13.15□□□□□ -0.3
CCDC3-202ENST00000378839 CCDC160A6NGH7 325 aa13.15□□□□□ -0.3
CCDC3-202ENST00000378839 INPP4BO15327 924 aa13.15□□□□□ -0.3
CCDC3-202ENST00000378839 CHEK2O96017 543 aa13.15□□□□□ -0.3
CCDC3-202ENST00000378839 GLUD1P00367 558 aa13.15□□□□□ -0.3
CCDC3-202ENST00000378839 HSPA8P11142 646 aaKnown RBP13.15□□□□□ -0.3
CCDC3-202ENST00000378839 HLA-FP30511 346 aa13.15□□□□□ -0.3
CCDC3-202ENST00000378839 CCR2P41597 374 aa13.15□□□□□ -0.3
CCDC3-202ENST00000378839 FOXM1Q08050 763 aa13.15□□□□□ -0.3
CCDC3-202ENST00000378839 PTGR1Q14914 329 aa13.15□□□□□ -0.3
CCDC3-202ENST00000378839 CYP20A1Q6UW02 462 aa13.15□□□□□ -0.3
CCDC3-202ENST00000378839 CERS6Q6ZMG9 384 aa13.15□□□□□ -0.3
CCDC3-202ENST00000378839 RBM44Q6ZP01 1051 aaKnown RBP13.15□□□□□ -0.3
CCDC3-202ENST00000378839 HTR3DQ70Z44 454 aa13.15□□□□□ -0.3
CCDC3-202ENST00000378839 SNRNP27Q8WVK2 155 aaKnown RBP13.15□□□□□ -0.3
CCDC3-202ENST00000378839 TBRG4Q969Z0 631 aaKnown RBP eCLIP13.15□□□□□ -0.3
CCDC3-202ENST00000378839 RHBDF1Q96CC6 855 aa13.15□□□□□ -0.3
CCDC3-202ENST00000378839 C2orf49Q9BVC5 232 aaPredicted RBP13.15□□□□□ -0.3
CCDC3-202ENST00000378839 ZIM2Q9NZV7 527 aa13.15□□□□□ -0.3
CCDC3-202ENST00000378839 OARD1Q9Y530 152 aa13.15□□□□□ -0.3
CCDC3-202ENST00000378839 SLC4A7Q9Y6M7 1214 aa13.15□□□□□ -0.3
CCDC3-202ENST00000378839 V9GYQ6 96 aa13.15□□□□□ -0.3
CCDC3-202ENST00000378839 DENND4CQ5VZ89 1909 aa13.14□□□□□ -0.31
CCDC3-202ENST00000378839 H0YJX3 145 aa13.14□□□□□ -0.31
CCDC3-202ENST00000378839 PFDN6O15212 129 aa13.14□□□□□ -0.31
CCDC3-202ENST00000378839 BNIP3LO60238 219 aa13.14□□□□□ -0.31
CCDC3-202ENST00000378839 TNFAIP8O95379 198 aa13.14□□□□□ -0.31
CCDC3-202ENST00000378839 URODP06132 367 aa13.14□□□□□ -0.31
CCDC3-202ENST00000378839 CKMP06732 381 aa13.14□□□□□ -0.31
CCDC3-202ENST00000378839 SRCP12931 536 aa13.14□□□□□ -0.31
CCDC3-202ENST00000378839 ZNF7P17097 686 aaPredicted RBP13.14□□□□□ -0.31
CCDC3-202ENST00000378839 GGT5P36269 586 aa13.14□□□□□ -0.31
CCDC3-202ENST00000378839 CCT8P50990 548 aa13.14□□□□□ -0.31
CCDC3-202ENST00000378839 MTPNP58546 118 aa13.14□□□□□ -0.31
CCDC3-202ENST00000378839 HMGCS1Q01581 520 aa13.14□□□□□ -0.31
CCDC3-202ENST00000378839 PTSQ03393 145 aa13.14□□□□□ -0.31
CCDC3-202ENST00000378839 AP5B1Q2VPB7 878 aa13.14□□□□□ -0.31
CCDC3-202ENST00000378839 PLEKHG6Q3KR16 790 aa13.14□□□□□ -0.31
CCDC3-202ENST00000378839 ADAMTSL2Q86TH1 951 aa13.14□□□□□ -0.31
CCDC3-202ENST00000378839 RBFAQ8N0V3 343 aa13.14□□□□□ -0.31
CCDC3-202ENST00000378839 DNAJC5GQ8N7S2 189 aa13.14□□□□□ -0.31
CCDC3-202ENST00000378839 ZFP28Q8NHY6 868 aa13.14□□□□□ -0.31
CCDC3-202ENST00000378839 TSPEARQ8WU66 669 aa13.14□□□□□ -0.31
CCDC3-202ENST00000378839 TFAP2CQ92754 450 aa13.14□□□□□ -0.31
CCDC3-202ENST00000378839 ABTB1Q969K4 478 aaPredicted RBP13.14□□□□□ -0.31
CCDC3-202ENST00000378839 NMD3Q96D46 503 aaKnown RBP13.14□□□□□ -0.31
CCDC3-202ENST00000378839 PPM1MQ96MI6 270 aa13.14□□□□□ -0.31
CCDC3-202ENST00000378839 SLC46A2Q9BY10 475 aa13.14□□□□□ -0.31
CCDC3-202ENST00000378839 RNF208Q9H0X6 261 aa13.14□□□□□ -0.31
CCDC3-202ENST00000378839 RPL5P46777 297 aaKnown RBP13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms