RNA–Protein interactions for RNA: ENST00000378526.8

LIG3-202, Transcript of DNA ligase 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene LIG3, Length 8,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-202ENST00000378526 AK6Q9Y3D8 172 aaKnown RBP8.64□□□□□ -1.03
LIG3-202ENST00000378526 YY2O15391 372 aa8.64□□□□□ -1.03
LIG3-202ENST00000378526 HCN1O60741 890 aa8.64□□□□□ -1.03
LIG3-202ENST00000378526 CYTIPO60759 359 aa8.64□□□□□ -1.03
LIG3-202ENST00000378526 PROSCO94903 275 aa8.64□□□□□ -1.03
LIG3-202ENST00000378526 PRKCGP05129 697 aa8.64□□□□□ -1.03
LIG3-202ENST00000378526 SSTR1P30872 391 aa8.64□□□□□ -1.03
LIG3-202ENST00000378526 CSTF2P33240 577 aaKnown RBP eCLIP8.64□□□□□ -1.03
LIG3-202ENST00000378526 MPIP34949 423 aa8.64□□□□□ -1.03
LIG3-202ENST00000378526 TAS2R50P59544 299 aa8.64□□□□□ -1.03
LIG3-202ENST00000378526 HERVK_113P62684 666 aa8.64□□□□□ -1.03
LIG3-202ENST00000378526 PLEKHG7Q6ZR37 379 aa8.64□□□□□ -1.03
LIG3-202ENST00000378526 TMED4Q7Z7H5 227 aa8.64□□□□□ -1.03
LIG3-202ENST00000378526 ALYREFQ86V81 257 aaKnown RBP8.64□□□□□ -1.03
LIG3-202ENST00000378526 RBM15BQ8NDT2 890 aaKnown RBP8.64□□□□□ -1.03
LIG3-202ENST00000378526 CHTF18Q8WVB6 975 aa8.64□□□□□ -1.03
LIG3-202ENST00000378526 APBA2Q99767 749 aa8.64□□□□□ -1.03
LIG3-202ENST00000378526 UNC93B1Q9H1C4 597 aa8.64□□□□□ -1.03
LIG3-202ENST00000378526 XPNPEP3Q9NQH7 507 aa8.64□□□□□ -1.03
LIG3-202ENST00000378526 INMT-MINDY4F8WBC2 141 aa8.64□□□□□ -1.03
LIG3-202ENST00000378526 ATP6AP2O75787 350 aa8.64□□□□□ -1.03
LIG3-202ENST00000378526 MAP3K8P41279 467 aa8.64□□□□□ -1.03
LIG3-202ENST00000378526 CLCN5P51795 746 aa8.64□□□□□ -1.03
LIG3-202ENST00000378526 RPL23AP62750 156 aaKnown RBP8.64□□□□□ -1.03
LIG3-202ENST00000378526 BNIP3Q12983 259 aa8.64□□□□□ -1.03
LIG3-202ENST00000378526 SLC9B1Q4ZJI4 515 aa8.64□□□□□ -1.03
LIG3-202ENST00000378526 PRAMEF13Q5VWM6 474 aa8.64□□□□□ -1.03
LIG3-202ENST00000378526 GLYATQ6IB77 296 aa8.64□□□□□ -1.03
LIG3-202ENST00000378526 TMEM179Q6ZVK1 233 aa8.64□□□□□ -1.03
LIG3-202ENST00000378526 VTCN1Q7Z7D3 282 aa8.64□□□□□ -1.03
LIG3-202ENST00000378526 ADGRG2Q8IZP9 1017 aa8.64□□□□□ -1.03
LIG3-202ENST00000378526 LIX1Q8N485 282 aa8.64□□□□□ -1.03
LIG3-202ENST00000378526 LINC00471Q8N535 108 aa8.64□□□□□ -1.03
LIG3-202ENST00000378526 CHPT1Q8WUD6 406 aa8.64□□□□□ -1.03
LIG3-202ENST00000378526 ARMC5Q96C12 935 aa8.64□□□□□ -1.03
LIG3-202ENST00000378526 HNRNPABQ99729 332 aaKnown RBP8.64□□□□□ -1.03
LIG3-202ENST00000378526 LY9Q9HBG7 655 aa8.64□□□□□ -1.03
LIG3-202ENST00000378526 FAIMQ9NVQ4 179 aa8.64□□□□□ -1.03
LIG3-202ENST00000378526 SDHAF2Q9NX18 166 aa8.64□□□□□ -1.03
LIG3-202ENST00000378526 TMEM260Q9NX78 707 aa8.64□□□□□ -1.03
LIG3-202ENST00000378526 MGAT4CQ9UBM8 478 aa8.64□□□□□ -1.03
LIG3-202ENST00000378526 AP1M2Q9Y6Q5 423 aa8.64□□□□□ -1.03
LIG3-202ENST00000378526 PNPLA7Q6ZV29 1317 aa8.64□□□□□ -1.03
LIG3-202ENST00000378526 EDF1O60869 148 aaKnown RBP8.64□□□□□ -1.03
LIG3-202ENST00000378526 ZBTB48P10074 688 aaPredicted RBP8.64□□□□□ -1.03
LIG3-202ENST00000378526 RAP2AP10114 183 aa8.64□□□□□ -1.03
LIG3-202ENST00000378526 CAMLGP49069 296 aa8.64□□□□□ -1.03
LIG3-202ENST00000378526 ZNF132P52740 706 aa8.64□□□□□ -1.03
LIG3-202ENST00000378526 RANP62826 216 aaKnown RBP8.64□□□□□ -1.03
LIG3-202ENST00000378526 ARFRP1Q13795 201 aa8.64□□□□□ -1.03
LIG3-202ENST00000378526 CCDC120Q96HB5 630 aa8.64□□□□□ -1.03
LIG3-202ENST00000378526 CDCA7Q9BWT1 371 aaPredicted RBP8.64□□□□□ -1.03
LIG3-202ENST00000378526 FBXO6Q9NRD1 293 aaPredicted RBP8.64□□□□□ -1.03
LIG3-202ENST00000378526 TMEM100Q9NV29 134 aa8.64□□□□□ -1.03
LIG3-202ENST00000378526 HACL1Q9UJ83 578 aa8.64□□□□□ -1.03
LIG3-202ENST00000378526 TBX3O15119 743 aa8.64□□□□□ -1.03
LIG3-202ENST00000378526 RAB3AP20336 220 aa8.64□□□□□ -1.03
LIG3-202ENST00000378526 CFL1P23528 166 aaKnown RBP8.64□□□□□ -1.03
LIG3-202ENST00000378526 HOXA13P31271 388 aaPredicted RBP8.64□□□□□ -1.03
LIG3-202ENST00000378526 GALK2Q01415 458 aa8.64□□□□□ -1.03
LIG3-202ENST00000378526 PPIGQ13427 754 aaKnown RBP eCLIP8.64□□□□□ -1.033e-7■■□□□ 14.5
LIG3-202ENST00000378526 MAD2L1BPQ15013 274 aaPredicted RBP8.64□□□□□ -1.03
LIG3-202ENST00000378526 GNASQ5JWF2 1037 aa8.64□□□□□ -1.03
LIG3-202ENST00000378526 MFSD5Q6N075 450 aa8.64□□□□□ -1.03
LIG3-202ENST00000378526 FAM111BQ6SJ93 734 aa8.64□□□□□ -1.03
LIG3-202ENST00000378526 SMARCD3Q6STE5 483 aa8.64□□□□□ -1.03
LIG3-202ENST00000378526 APTXQ7Z2E3 356 aaKnown RBP8.64□□□□□ -1.03
LIG3-202ENST00000378526 OR4C5Q8NGB2 326 aa8.64□□□□□ -1.03
LIG3-202ENST00000378526 DYNLL2Q96FJ2 89 aa8.64□□□□□ -1.03
LIG3-202ENST00000378526 ZNF486Q96H40 463 aaPredicted RBP8.64□□□□□ -1.03
LIG3-202ENST00000378526 CORO1BQ9BR76 489 aa8.64□□□□□ -1.03
LIG3-202ENST00000378526 GON7Q9BXV9 100 aa8.64□□□□□ -1.03
LIG3-202ENST00000378526 POTEKPQ9BYX7 375 aa8.64□□□□□ -1.03
LIG3-202ENST00000378526 PPIL3Q9H2H8 161 aaKnown RBP8.64□□□□□ -1.03
LIG3-202ENST00000378526 SLC52A2Q9HAB3 445 aa8.64□□□□□ -1.03
LIG3-202ENST00000378526 TAS2R8Q9NYW2 309 aa8.64□□□□□ -1.03
LIG3-202ENST00000378526 LRRIQ1Q96JM4 1722 aa8.64□□□□□ -1.03
LIG3-202ENST00000378526 QSOX1O00391 747 aa8.64□□□□□ -1.03
LIG3-202ENST00000378526 FDX1P10109 184 aa8.64□□□□□ -1.03
LIG3-202ENST00000378526 NELFEP18615 380 aaKnown RBP8.64□□□□□ -1.03
LIG3-202ENST00000378526 IGFALSP35858 605 aa8.64□□□□□ -1.03
LIG3-202ENST00000378526 USP41Q3LFD5 358 aa8.64□□□□□ -1.03
LIG3-202ENST00000378526 LRRC66Q68CR7 880 aa8.64□□□□□ -1.03
LIG3-202ENST00000378526 RETSATQ6NUM9 610 aa8.64□□□□□ -1.03
LIG3-202ENST00000378526 ADAMTSL2Q86TH1 951 aa8.64□□□□□ -1.03
LIG3-202ENST00000378526 OR10H4Q8NGA5 316 aa8.64□□□□□ -1.03
LIG3-202ENST00000378526 SH2B3Q9UQQ2 575 aa8.64□□□□□ -1.03
LIG3-202ENST00000378526 A0A096LPI6 279 aa8.63□□□□□ -1.03
LIG3-202ENST00000378526 FOXO3O43524 673 aa8.63□□□□□ -1.03
LIG3-202ENST00000378526 FGBP02675 491 aa8.63□□□□□ -1.03
LIG3-202ENST00000378526 IFNW1P05000 195 aa8.63□□□□□ -1.03
LIG3-202ENST00000378526 ZNF20P17024 532 aa8.63□□□□□ -1.03
LIG3-202ENST00000378526 SLC26A2P50443 739 aa8.63□□□□□ -1.03
LIG3-202ENST00000378526 BCAT1P54687 386 aa8.63□□□□□ -1.03
LIG3-202ENST00000378526 SLC26A5P58743 744 aa8.63□□□□□ -1.03
LIG3-202ENST00000378526 TOR1AIP1Q5JTV8 583 aa8.63□□□□□ -1.03
LIG3-202ENST00000378526 CLVS2Q5SYC1 327 aa8.63□□□□□ -1.03
LIG3-202ENST00000378526 NT5DC3Q86UY8 548 aa8.63□□□□□ -1.03
LIG3-202ENST00000378526 LZTR1Q8N653 840 aa8.63□□□□□ -1.03
LIG3-202ENST00000378526 SLC44A1Q8WWI5 657 aa8.63□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms