RNA–Protein interactions for RNA: ENST00000377348.6

VPS28-202, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS28, Length 1,097 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-202ENST00000377348 PMS2P1A4D2B8 440 aa13.07□□□□□ -0.32
VPS28-202ENST00000377348 KLHL33A6NCF5 533 aa13.07□□□□□ -0.32
VPS28-202ENST00000377348 QSOX1O00391 747 aa13.07□□□□□ -0.32
VPS28-202ENST00000377348 CPNE6O95741 557 aa13.07□□□□□ -0.32
VPS28-202ENST00000377348 FTH1P02794 183 aa13.07□□□□□ -0.32
VPS28-202ENST00000377348 MTHFD1P11586 935 aaKnown RBP13.07□□□□□ -0.32
VPS28-202ENST00000377348 HOXB3P14651 431 aaPredicted RBP13.07□□□□□ -0.32
VPS28-202ENST00000377348 FMO4P31512 558 aa13.07□□□□□ -0.32
VPS28-202ENST00000377348 ELK3P41970 407 aa13.07□□□□□ -0.32
VPS28-202ENST00000377348 CSE1LP55060 971 aaKnown RBP13.07□□□□□ -0.32
VPS28-202ENST00000377348 INHBCP55103 352 aa13.07□□□□□ -0.32
VPS28-202ENST00000377348 EIF3BP55884 814 aaKnown RBP13.07□□□□□ -0.32
VPS28-202ENST00000377348 ARL4CP56559 192 aa13.07□□□□□ -0.32
VPS28-202ENST00000377348 SLC7A5Q01650 507 aa13.07□□□□□ -0.32
VPS28-202ENST00000377348 CTBP1Q13363 440 aa13.07□□□□□ -0.32
VPS28-202ENST00000377348 THOC5Q13769 683 aaKnown RBP13.07□□□□□ -0.32
VPS28-202ENST00000377348 BOP1Q14137 746 aaKnown RBP13.07□□□□□ -0.32
VPS28-202ENST00000377348 GPR18Q14330 331 aa13.07□□□□□ -0.32
VPS28-202ENST00000377348 TRADDQ15628 312 aa13.07□□□□□ -0.32
VPS28-202ENST00000377348 HIF1AQ16665 826 aa13.07□□□□□ -0.32
VPS28-202ENST00000377348 LONRF1Q17RB8 773 aa13.07□□□□□ -0.32
VPS28-202ENST00000377348 TYSND1Q2T9J0 566 aa13.07□□□□□ -0.32
VPS28-202ENST00000377348 CTSL3PQ5NE16 218 aa13.07□□□□□ -0.32
VPS28-202ENST00000377348 ZNF470Q6ECI4 717 aa13.07□□□□□ -0.32
VPS28-202ENST00000377348 ZNF574Q6ZN55 896 aaPredicted RBP13.07□□□□□ -0.32
VPS28-202ENST00000377348 TMEM26Q6ZUK4 368 aa13.07□□□□□ -0.32
VPS28-202ENST00000377348 CENPUQ71F23 418 aa13.07□□□□□ -0.32
VPS28-202ENST00000377348 SDCCAG8Q86SQ7 713 aaPredicted RBP13.07□□□□□ -0.32
VPS28-202ENST00000377348 SERBP1Q8NC51 408 aaKnown RBP eCLIP13.07□□□□□ -0.32
VPS28-202ENST00000377348 MDM1Q8TC05 714 aa13.07□□□□□ -0.32
VPS28-202ENST00000377348 LPGAT1Q92604 370 aa13.07□□□□□ -0.32
VPS28-202ENST00000377348 SH3KBP1Q96B97 665 aa13.07□□□□□ -0.32
VPS28-202ENST00000377348 CFAP36Q96G28 342 aa13.07□□□□□ -0.32
VPS28-202ENST00000377348 CNTNAP3BQ96NU0 1288 aa13.07□□□□□ -0.32
VPS28-202ENST00000377348 CNTNAP3Q9BZ76 1288 aa13.07□□□□□ -0.32
VPS28-202ENST00000377348 ZMYND15Q9H091 742 aa13.07□□□□□ -0.32
VPS28-202ENST00000377348 P2RY12Q9H244 342 aa13.07□□□□□ -0.32
VPS28-202ENST00000377348 OR52A5Q9H2C5 316 aa13.07□□□□□ -0.32
VPS28-202ENST00000377348 SEMA6CQ9H3T2 930 aa13.07□□□□□ -0.32
VPS28-202ENST00000377348 EPB41L5Q9HCM4 733 aa13.07□□□□□ -0.32
VPS28-202ENST00000377348 SLC40A1Q9NP59 571 aa13.07□□□□□ -0.32
VPS28-202ENST00000377348 GRHL1Q9NZI5 618 aa13.07□□□□□ -0.32
VPS28-202ENST00000377348 FAM169AQ9Y6X4 670 aa13.07□□□□□ -0.32
VPS28-202ENST00000377348 PIKFYVEQ9Y2I7 2098 aa13.07□□□□□ -0.32
VPS28-202ENST00000377348 LILRA5A6NI73 299 aa13.06□□□□□ -0.32
VPS28-202ENST00000377348 SMAPO00193 183 aa13.06□□□□□ -0.32
VPS28-202ENST00000377348 ZW10O43264 779 aa13.06□□□□□ -0.32
VPS28-202ENST00000377348 TUBB4AP04350 444 aa13.06□□□□□ -0.32
VPS28-202ENST00000377348 ERVK-10P10266 1014 aa13.06□□□□□ -0.32
VPS28-202ENST00000377348 TYRP1P17643 537 aa13.06□□□□□ -0.32
VPS28-202ENST00000377348 OGNP20774 298 aaKnown RBP13.06□□□□□ -0.32
VPS28-202ENST00000377348 CCR7P32248 378 aa13.06□□□□□ -0.32
VPS28-202ENST00000377348 GPLD1P80108 840 aa13.06□□□□□ -0.32
VPS28-202ENST00000377348 FASTKD3Q14CZ7 662 aaKnown RBP13.06□□□□□ -0.32
VPS28-202ENST00000377348 HSP90AA5PQ58FG0 334 aa13.06□□□□□ -0.32
VPS28-202ENST00000377348 PTRHD1Q6GMV3 140 aaKnown RBP13.06□□□□□ -0.32
VPS28-202ENST00000377348 CAPRIN2Q6IMN6 1127 aaKnown RBP13.06□□□□□ -0.32
VPS28-202ENST00000377348 C8orf74Q6P047 294 aa13.06□□□□□ -0.32
VPS28-202ENST00000377348 UNC5AQ6ZN44 842 aa13.06□□□□□ -0.32
VPS28-202ENST00000377348 PIM3Q86V86 326 aa13.06□□□□□ -0.32
VPS28-202ENST00000377348 KCNMB4Q86W47 210 aa13.06□□□□□ -0.32
VPS28-202ENST00000377348 CILP2Q8IUL8 1156 aa13.06□□□□□ -0.32
VPS28-202ENST00000377348 ANKMY2Q8IV38 441 aa13.06□□□□□ -0.32
VPS28-202ENST00000377348 SLITRK4Q8IW52 837 aa13.06□□□□□ -0.32
VPS28-202ENST00000377348 AVL9Q8NBF6 648 aa13.06□□□□□ -0.32
VPS28-202ENST00000377348 OR10G6Q8NH81 332 aa13.06□□□□□ -0.32
VPS28-202ENST00000377348 KIF18AQ8NI77 898 aa13.06□□□□□ -0.32
VPS28-202ENST00000377348 FAM136AQ96C01 138 aa13.06□□□□□ -0.32
VPS28-202ENST00000377348 AHCYL2Q96HN2 611 aaKnown RBP13.06□□□□□ -0.32
VPS28-202ENST00000377348 LRRC1Q9BTT6 524 aa13.06□□□□□ -0.32
VPS28-202ENST00000377348 LDHAL6BQ9BYZ2 381 aaPredicted RBP13.06□□□□□ -0.32
VPS28-202ENST00000377348 FBXO6Q9NRD1 293 aaPredicted RBP13.06□□□□□ -0.32
VPS28-202ENST00000377348 IARS2Q9NSE4 1012 aaKnown RBP13.06□□□□□ -0.32
VPS28-202ENST00000377348 OGFRQ9NZT2 677 aa13.06□□□□□ -0.32
VPS28-202ENST00000377348 WHRNQ9P202 907 aa13.06□□□□□ -0.32
VPS28-202ENST00000377348 GNPTGQ9UJJ9 305 aa13.06□□□□□ -0.32
VPS28-202ENST00000377348 CRYL1Q9Y2S2 319 aa13.06□□□□□ -0.32
VPS28-202ENST00000377348 UTP11Q9Y3A2 253 aaKnown RBP13.06□□□□□ -0.32
VPS28-202ENST00000377348 TEX264Q9Y6I9 313 aa13.06□□□□□ -0.32
VPS28-202ENST00000377348 IGHV5-10-1A0A0J9YXX1 117 aa13.05□□□□□ -0.32
VPS28-202ENST00000377348 ESYT3A0FGR9 886 aa13.05□□□□□ -0.32
VPS28-202ENST00000377348 SLC5A10A0PJK1 596 aa13.05□□□□□ -0.32
VPS28-202ENST00000377348 LIN7AO14910 233 aaPredicted RBP13.05□□□□□ -0.32
VPS28-202ENST00000377348 DUX1O43812 170 aa13.05□□□□□ -0.32
VPS28-202ENST00000377348 NIPSNAP2O75323 286 aa13.05□□□□□ -0.32
VPS28-202ENST00000377348 UBXN7O94888 489 aa13.05□□□□□ -0.32
VPS28-202ENST00000377348 S1PR4O95977 384 aa13.05□□□□□ -0.32
VPS28-202ENST00000377348 MPOP05164 745 aa13.05□□□□□ -0.32
VPS28-202ENST00000377348 RPS3P23396 243 aaKnown RBP eCLIP13.05□□□□□ -0.325e-7■■□□□ 13
VPS28-202ENST00000377348 SLC1A2P43004 574 aa13.05□□□□□ -0.32
VPS28-202ENST00000377348 EPHA4P54764 986 aa13.05□□□□□ -0.32
VPS28-202ENST00000377348 MPP1Q00013 466 aa13.05□□□□□ -0.32
VPS28-202ENST00000377348 ZFP36L1Q07352 338 aaKnown RBP13.05□□□□□ -0.32
VPS28-202ENST00000377348 CYP4F3Q08477 520 aa13.05□□□□□ -0.32
VPS28-202ENST00000377348 PDIA2Q13087 525 aaKnown RBP13.05□□□□□ -0.32
VPS28-202ENST00000377348 CALCOCO2Q13137 446 aa13.05□□□□□ -0.32
VPS28-202ENST00000377348 RPA4Q13156 261 aa13.05□□□□□ -0.32
VPS28-202ENST00000377348 SYTL3Q4VX76 610 aa13.05□□□□□ -0.32
VPS28-202ENST00000377348 C3orf38Q5JPI3 329 aa13.05□□□□□ -0.32
VPS28-202ENST00000377348 SPANXN3Q5MJ09 141 aa13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms