RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 CLIC4Q9Y696 253 aa2.05□□□□□ -2.08
VPS13A-206ENST00000376646 PASKQ96RG2 1323 aa2.05□□□□□ -2.08
VPS13A-206ENST00000376646 A0A1W2PP11 408 aa2.05□□□□□ -2.08
VPS13A-206ENST00000376646 OR5K3A6NET4 321 aa2.05□□□□□ -2.08
VPS13A-206ENST00000376646 DUXAA6NLW8 204 aa2.05□□□□□ -2.08
VPS13A-206ENST00000376646 FAM90A26D6RGX4 464 aa2.05□□□□□ -2.08
VPS13A-206ENST00000376646 PRKNO60260 465 aaPredicted RBP2.05□□□□□ -2.08
VPS13A-206ENST00000376646 GPC4O75487 556 aa2.05□□□□□ -2.08
VPS13A-206ENST00000376646 ZNF821O75541 412 aaPredicted RBP2.05□□□□□ -2.08
VPS13A-206ENST00000376646 BAG4O95429 457 aaKnown RBP2.05□□□□□ -2.08
VPS13A-206ENST00000376646 INHBAP08476 426 aa2.05□□□□□ -2.08
VPS13A-206ENST00000376646 KRT19P08727 400 aa2.05□□□□□ -2.08
VPS13A-206ENST00000376646 PRSS56P0CW18 603 aa2.05□□□□□ -2.08
VPS13A-206ENST00000376646 NR2F1P10589 423 aa2.05□□□□□ -2.08
VPS13A-206ENST00000376646 AHRP35869 848 aa2.05□□□□□ -2.08
VPS13A-206ENST00000376646 PRCPP42785 496 aa2.05□□□□□ -2.08
VPS13A-206ENST00000376646 KRTAP10-3P60369 221 aa2.05□□□□□ -2.08
VPS13A-206ENST00000376646 ZBED6P86452 979 aa2.05□□□□□ -2.08
VPS13A-206ENST00000376646 PMP22Q01453 160 aa2.05□□□□□ -2.08
VPS13A-206ENST00000376646 CALD1Q05682 793 aaKnown RBP2.05□□□□□ -2.08
VPS13A-206ENST00000376646 DLG2Q15700 870 aa2.05□□□□□ -2.08
VPS13A-206ENST00000376646 NTRK2Q16620 822 aa2.05□□□□□ -2.08
VPS13A-206ENST00000376646 PNLIPRP3Q17RR3 467 aa2.05□□□□□ -2.08
VPS13A-206ENST00000376646 PCGF3Q3KNV8 242 aa2.05□□□□□ -2.08
VPS13A-206ENST00000376646 SOWAHCQ53LP3 525 aaPredicted RBP2.05□□□□□ -2.08
VPS13A-206ENST00000376646 KRTCAP3Q53RY4 240 aa2.05□□□□□ -2.08
VPS13A-206ENST00000376646 IGSF11Q5DX21 431 aa2.05□□□□□ -2.08
VPS13A-206ENST00000376646 TECRLQ5HYJ1 363 aa2.05□□□□□ -2.08
VPS13A-206ENST00000376646 DCST1Q5T197 706 aa2.05□□□□□ -2.08
VPS13A-206ENST00000376646 ZC2HC1BQ5TFG8 222 aa2.05□□□□□ -2.08
VPS13A-206ENST00000376646 SLC30A6Q6NXT4 461 aa2.05□□□□□ -2.08
VPS13A-206ENST00000376646 APLFQ8IW19 511 aaPredicted RBP2.05□□□□□ -2.08
VPS13A-206ENST00000376646 KCTD6Q8NC69 237 aa2.05□□□□□ -2.08
VPS13A-206ENST00000376646 ANKRD9Q96BM1 317 aaPredicted RBP2.05□□□□□ -2.08
VPS13A-206ENST00000376646 LRR1Q96L50 414 aa2.05□□□□□ -2.08
VPS13A-206ENST00000376646 GIMAP4Q9NUV9 329 aa2.05□□□□□ -2.08
VPS13A-206ENST00000376646 PAG1Q9NWQ8 432 aa2.05□□□□□ -2.08
VPS13A-206ENST00000376646 MTMR10Q9NXD2 777 aa2.05□□□□□ -2.08
VPS13A-206ENST00000376646 ARHGEF38Q9NXL2 777 aa2.05□□□□□ -2.08
VPS13A-206ENST00000376646 OR14J1Q9UGF5 321 aa2.05□□□□□ -2.08
VPS13A-206ENST00000376646 FAM169AQ9Y6X4 670 aa2.05□□□□□ -2.08
VPS13A-206ENST00000376646 A0A1W2PR77 199 aa2.04□□□□□ -2.08
VPS13A-206ENST00000376646 ADAMDEC1O15204 470 aa2.04□□□□□ -2.08
VPS13A-206ENST00000376646 OGG1O15527 345 aa2.04□□□□□ -2.08
VPS13A-206ENST00000376646 MITFO75030 526 aaPredicted RBP2.04□□□□□ -2.08
VPS13A-206ENST00000376646 NR3C1P04150 777 aa2.04□□□□□ -2.08
VPS13A-206ENST00000376646 HIST1H2ABP04908 130 aa2.04□□□□□ -2.08
VPS13A-206ENST00000376646 ICAM1P05362 532 aa2.04□□□□□ -2.08
VPS13A-206ENST00000376646 ERVK-10P10266 1014 aa2.04□□□□□ -2.08
VPS13A-206ENST00000376646 MMP9P14780 707 aa2.04□□□□□ -2.08
VPS13A-206ENST00000376646 GNB3P16520 340 aa2.04□□□□□ -2.08
VPS13A-206ENST00000376646 HIST1H2ADP20671 130 aa2.04□□□□□ -2.08
VPS13A-206ENST00000376646 IL11P20809 199 aa2.04□□□□□ -2.08
VPS13A-206ENST00000376646 ACADLP28330 430 aa2.04□□□□□ -2.08
VPS13A-206ENST00000376646 STAT2P52630 851 aa2.04□□□□□ -2.08
VPS13A-206ENST00000376646 TERF1P54274 439 aa2.04□□□□□ -2.08
VPS13A-206ENST00000376646 MRPS34P82930 218 aaKnown RBP2.04□□□□□ -2.08
VPS13A-206ENST00000376646 SPOCK1Q08629 439 aa2.04□□□□□ -2.08
VPS13A-206ENST00000376646 PRPF4BQ13523 1007 aaKnown RBP2.04□□□□□ -2.08
VPS13A-206ENST00000376646 TMEM187Q14656 261 aa2.04□□□□□ -2.08
VPS13A-206ENST00000376646 RASA2Q15283 850 aa2.04□□□□□ -2.08
VPS13A-206ENST00000376646 CCDC6Q16204 474 aa2.04□□□□□ -2.08
VPS13A-206ENST00000376646 TMEM266Q2M3C6 531 aa2.04□□□□□ -2.08
VPS13A-206ENST00000376646 ZC2HC1CQ53FD0 456 aaPredicted RBP2.04□□□□□ -2.08
VPS13A-206ENST00000376646 CCNYL2Q5T2Q4 361 aa2.04□□□□□ -2.08
VPS13A-206ENST00000376646 GARNL3Q5VVW2 1013 aa2.04□□□□□ -2.08
VPS13A-206ENST00000376646 NAA16Q6N069 864 aaPredicted RBP2.04□□□□□ -2.08
VPS13A-206ENST00000376646 PLXDC2Q6UX71 529 aa2.04□□□□□ -2.08
VPS13A-206ENST00000376646 HIST3H2AQ7L7L0 130 aa2.04□□□□□ -2.08
VPS13A-206ENST00000376646 SDCCAG8Q86SQ7 713 aaPredicted RBP2.04□□□□□ -2.08
VPS13A-206ENST00000376646 PRPF39Q86UA1 669 aaKnown RBP2.04□□□□□ -2.08
VPS13A-206ENST00000376646 TSPAN33Q86UF1 283 aa2.04□□□□□ -2.08
VPS13A-206ENST00000376646 SCYL3Q8IZE3 742 aa2.04□□□□□ -2.08
VPS13A-206ENST00000376646 AVL9Q8NBF6 648 aa2.04□□□□□ -2.08
VPS13A-206ENST00000376646 CCDC191Q8NCU4 936 aa2.04□□□□□ -2.08
VPS13A-206ENST00000376646 APPL2Q8NEU8 664 aa2.04□□□□□ -2.08
VPS13A-206ENST00000376646 TRIM58Q8NG06 486 aa2.04□□□□□ -2.08
VPS13A-206ENST00000376646 PRPF31Q8WWY3 499 aaKnown RBP2.04□□□□□ -2.08
VPS13A-206ENST00000376646 PHF21AQ96BD5 680 aa2.04□□□□□ -2.08
VPS13A-206ENST00000376646 EGLN2Q96KS0 407 aa2.04□□□□□ -2.08
VPS13A-206ENST00000376646 GCNAQ96QF7 691 aa2.04□□□□□ -2.08
VPS13A-206ENST00000376646 APOL6Q9BWW8 343 aa2.04□□□□□ -2.08
VPS13A-206ENST00000376646 TXLNGYQ9BZA5 131 aa2.04□□□□□ -2.08
VPS13A-206ENST00000376646 LTB4R2Q9NPC1 389 aa2.04□□□□□ -2.08
VPS13A-206ENST00000376646 TCP11L1Q9NUJ3 509 aa2.04□□□□□ -2.08
VPS13A-206ENST00000376646 WSB2Q9NYS7 404 aaPredicted RBP2.04□□□□□ -2.08
VPS13A-206ENST00000376646 CPSF2Q9P2I0 782 aaKnown RBP2.04□□□□□ -2.08
VPS13A-206ENST00000376646 NFKBIL1Q9UBC1 381 aaPredicted RBP2.04□□□□□ -2.08
VPS13A-206ENST00000376646 A0A087X002 238 aa2.03□□□□□ -2.08
VPS13A-206ENST00000376646 LRRC72A6NJI9 287 aa2.03□□□□□ -2.08
VPS13A-206ENST00000376646 HS3ST1O14792 307 aa2.03□□□□□ -2.08
VPS13A-206ENST00000376646 PAPSS1O43252 624 aaPredicted RBP2.03□□□□□ -2.08
VPS13A-206ENST00000376646 TSHBP01222 138 aa2.03□□□□□ -2.08
VPS13A-206ENST00000376646 ACTN1P12814 892 aa2.03□□□□□ -2.08
VPS13A-206ENST00000376646 MSH2P43246 934 aa2.03□□□□□ -2.08
VPS13A-206ENST00000376646 LMAN1P49257 510 aa2.03□□□□□ -2.08
VPS13A-206ENST00000376646 CLK1P49759 484 aaKnown RBP2.03□□□□□ -2.08
VPS13A-206ENST00000376646 GRIK2Q13002 908 aa2.03□□□□□ -2.08
VPS13A-206ENST00000376646 KCNC3Q14003 757 aa2.03□□□□□ -2.08
VPS13A-206ENST00000376646 LPAL2Q16609 132 aa2.03□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms