RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 CD320Q9NPF0 282 aa11.29□□□□□ -0.6
PTPRF-203ENST00000372407 TMEM59LQ9UK28 342 aa11.29□□□□□ -0.6
PTPRF-203ENST00000372407 SOWAHBA6NEL2 793 aa11.29□□□□□ -0.6
PTPRF-203ENST00000372407 DUSP11O75319 330 aaKnown RBP11.29□□□□□ -0.6
PTPRF-203ENST00000372407 ERN1O75460 977 aaKnown RBP11.29□□□□□ -0.6
PTPRF-203ENST00000372407 PIGRP01833 764 aa11.29□□□□□ -0.6
PTPRF-203ENST00000372407 NR4A1P22736 598 aa11.29□□□□□ -0.6
PTPRF-203ENST00000372407 ZNF132P52740 706 aa11.29□□□□□ -0.6
PTPRF-203ENST00000372407 PNLIPRP1P54315 467 aa11.29□□□□□ -0.6
PTPRF-203ENST00000372407 RPS14P62263 151 aaKnown RBP11.29□□□□□ -0.6
PTPRF-203ENST00000372407 SRSF11Q05519 484 aaKnown RBP11.29□□□□□ -0.6
PTPRF-203ENST00000372407 PLEKHG4Q58EX7 1191 aa11.29□□□□□ -0.6
PTPRF-203ENST00000372407 LDLRAP1Q5SW96 308 aa11.29□□□□□ -0.6
PTPRF-203ENST00000372407 RAB2BQ8WUD1 216 aa11.29□□□□□ -0.6
PTPRF-203ENST00000372407 ESAMQ96AP7 390 aa11.29□□□□□ -0.6
PTPRF-203ENST00000372407 FBXL18Q96ME1 805 aa11.29□□□□□ -0.6
PTPRF-203ENST00000372407 NSMCE3Q96MG7 304 aa11.29□□□□□ -0.6
PTPRF-203ENST00000372407 MYOCQ99972 504 aa11.29□□□□□ -0.6
PTPRF-203ENST00000372407 INTS10Q9NVR2 710 aaKnown RBP11.29□□□□□ -0.6
PTPRF-203ENST00000372407 SNX10Q9Y5X0 201 aa11.29□□□□□ -0.6
PTPRF-203ENST00000372407 OAS3Q9Y6K5 1087 aaKnown RBP11.29□□□□□ -0.6
PTPRF-203ENST00000372407 SYN3O14994 580 aa11.28□□□□□ -0.6
PTPRF-203ENST00000372407 MPZL2O60487 215 aa11.28□□□□□ -0.6
PTPRF-203ENST00000372407 KHDRBS3O75525 346 aaKnown RBP11.28□□□□□ -0.6
PTPRF-203ENST00000372407 MNDAP41218 407 aa11.28□□□□□ -0.6
PTPRF-203ENST00000372407 ASPAP45381 313 aa11.28□□□□□ -0.6
PTPRF-203ENST00000372407 DLG1Q12959 904 aa11.28□□□□□ -0.6
PTPRF-203ENST00000372407 FAM171BQ6P995 826 aa11.28□□□□□ -0.6
PTPRF-203ENST00000372407 OAFQ86UD1 273 aa11.28□□□□□ -0.6
PTPRF-203ENST00000372407 ANKRD46Q86W74 232 aa11.28□□□□□ -0.6
PTPRF-203ENST00000372407 MEIOBQ8N635 442 aa11.28□□□□□ -0.6
PTPRF-203ENST00000372407 OR52J3Q8NH60 311 aa11.28□□□□□ -0.6
PTPRF-203ENST00000372407 OR10G6Q8NH81 332 aa11.28□□□□□ -0.6
PTPRF-203ENST00000372407 MCCC1Q96RQ3 725 aaPredicted RBP11.28□□□□□ -0.6
PTPRF-203ENST00000372407 KAT8Q9H7Z6 458 aaKnown RBP11.28□□□□□ -0.6
PTPRF-203ENST00000372407 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP11.28□□□□□ -0.6
PTPRF-203ENST00000372407 CREBZFQ9NS37 354 aa11.28□□□□□ -0.6
PTPRF-203ENST00000372407 ZNF358Q9NW07 568 aa11.28□□□□□ -0.6
PTPRF-203ENST00000372407 TRNAU1APQ9NX07 287 aaKnown RBP11.28□□□□□ -0.6
PTPRF-203ENST00000372407 ATRNL1Q5VV63 1379 aa11.28□□□□□ -0.6
PTPRF-203ENST00000372407 ABHD14A-ACY1A0A1B0GW23 586 aa11.28□□□□□ -0.6
PTPRF-203ENST00000372407 NEMP2A6NFY4 417 aa11.28□□□□□ -0.6
PTPRF-203ENST00000372407 MATN2O00339 956 aa11.28□□□□□ -0.6
PTPRF-203ENST00000372407 CXCR6O00574 342 aa11.28□□□□□ -0.6
PTPRF-203ENST00000372407 UGT1A9O60656 530 aa11.28□□□□□ -0.6
PTPRF-203ENST00000372407 RAP2AP10114 183 aa11.28□□□□□ -0.6
PTPRF-203ENST00000372407 SAGP10523 405 aaPredicted RBP11.28□□□□□ -0.6
PTPRF-203ENST00000372407 NCK1P16333 377 aa11.28□□□□□ -0.6
PTPRF-203ENST00000372407 FAUP35544 74 aaKnown RBP11.28□□□□□ -0.6
PTPRF-203ENST00000372407 SLC1A2P43004 574 aa11.28□□□□□ -0.6
PTPRF-203ENST00000372407 CHRNA4P43681 627 aa11.28□□□□□ -0.6
PTPRF-203ENST00000372407 SCN1BQ07699 218 aa11.28□□□□□ -0.6
PTPRF-203ENST00000372407 HERC3Q15034 1050 aa11.28□□□□□ -0.6
PTPRF-203ENST00000372407 DPY19L1Q2PZI1 675 aa11.28□□□□□ -0.6
PTPRF-203ENST00000372407 ZFP69Q49AA0 526 aa11.28□□□□□ -0.6
PTPRF-203ENST00000372407 PITRM1Q5JRX3 1037 aa11.28□□□□□ -0.6
PTPRF-203ENST00000372407 BEND5Q7L4P6 421 aa11.28□□□□□ -0.6
PTPRF-203ENST00000372407 LAPTM4BQ86VI4 370 aa11.28□□□□□ -0.6
PTPRF-203ENST00000372407 GJD3Q8N144 294 aa11.28□□□□□ -0.6
PTPRF-203ENST00000372407 SLC43A3Q8NBI5 491 aa11.28□□□□□ -0.6
PTPRF-203ENST00000372407 FAM98AQ8NCA5 519 aaKnown RBP11.28□□□□□ -0.6
PTPRF-203ENST00000372407 ZNF516Q92618 1163 aa11.28□□□□□ -0.6
PTPRF-203ENST00000372407 UGT1A7Q9HAW7 530 aa11.28□□□□□ -0.6
PTPRF-203ENST00000372407 UGT1A10Q9HAW8 530 aa11.28□□□□□ -0.6
PTPRF-203ENST00000372407 UGT1A8Q9HAW9 530 aa11.28□□□□□ -0.6
PTPRF-203ENST00000372407 ELL3Q9HB65 397 aaPredicted RBP11.28□□□□□ -0.6
PTPRF-203ENST00000372407 NKIRAS2Q9NYR9 191 aa11.28□□□□□ -0.6
PTPRF-203ENST00000372407 RUVBL1Q9Y265 456 aaKnown RBP11.28□□□□□ -0.6
PTPRF-203ENST00000372407 MAP4K5Q9Y4K4 846 aa11.28□□□□□ -0.6
PTPRF-203ENST00000372407 STX16-NPEPL1H3BU86 382 aa11.28□□□□□ -0.6
PTPRF-203ENST00000372407 STX16O14662 325 aa11.28□□□□□ -0.6
PTPRF-203ENST00000372407 AP2A2O94973 939 aa11.28□□□□□ -0.6
PTPRF-203ENST00000372407 POP4O95707 220 aaKnown RBP11.28□□□□□ -0.6
PTPRF-203ENST00000372407 PTX3P26022 381 aaPredicted RBP11.28□□□□□ -0.6
PTPRF-203ENST00000372407 IL1R2P27930 398 aa11.28□□□□□ -0.6
PTPRF-203ENST00000372407 MAPK12P53778 367 aa11.28□□□□□ -0.6
PTPRF-203ENST00000372407 MYBPC1Q00872 1141 aa11.28□□□□□ -0.6
PTPRF-203ENST00000372407 LARS2Q15031 903 aaKnown RBP11.28□□□□□ -0.6
PTPRF-203ENST00000372407 TMEM198Q66K66 360 aa11.28□□□□□ -0.6
PTPRF-203ENST00000372407 PEX5LQ8IYB4 626 aa11.28□□□□□ -0.6
PTPRF-203ENST00000372407 TTC29Q8NA56 475 aaPredicted RBP11.28□□□□□ -0.6
PTPRF-203ENST00000372407 TRPV1Q8NER1 839 aa11.28□□□□□ -0.6
PTPRF-203ENST00000372407 HAPLN3Q96S86 360 aa11.28□□□□□ -0.6
PTPRF-203ENST00000372407 LRRC3Q9BY71 257 aa11.28□□□□□ -0.6
PTPRF-203ENST00000372407 PIGUQ9H490 435 aa11.28□□□□□ -0.6
PTPRF-203ENST00000372407 TFB2MQ9H5Q4 396 aaKnown RBP11.28□□□□□ -0.6
PTPRF-203ENST00000372407 ABCB9Q9NP78 766 aa11.28□□□□□ -0.6
PTPRF-203ENST00000372407 EQTNQ9NQ60 294 aa11.28□□□□□ -0.6
PTPRF-203ENST00000372407 DNAJB9Q9UBS3 223 aa11.28□□□□□ -0.6
PTPRF-203ENST00000372407 GTF2IRD1Q9UHL9 959 aa11.28□□□□□ -0.6
PTPRF-203ENST00000372407 ZNF214Q9UL59 606 aaPredicted RBP11.28□□□□□ -0.6
PTPRF-203ENST00000372407 PEX16Q9Y5Y5 336 aa11.28□□□□□ -0.6
PTPRF-203ENST00000372407 CNTRLQ7Z7A1 2325 aa11.28□□□□□ -0.6
PTPRF-203ENST00000372407 MAGEB17A8MXT2 336 aa11.28□□□□□ -0.6
PTPRF-203ENST00000372407 E7ENX8 843 aa11.28□□□□□ -0.6
PTPRF-203ENST00000372407 CCNDBP1O95273 360 aa11.28□□□□□ -0.6
PTPRF-203ENST00000372407 TOP3BO95985 862 aaKnown RBP11.28□□□□□ -0.6
PTPRF-203ENST00000372407 GNAZP19086 355 aa11.28□□□□□ -0.6
PTPRF-203ENST00000372407 IDSP22304 550 aa11.28□□□□□ -0.6
PTPRF-203ENST00000372407 SDC2P34741 201 aa11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms