RNA–Protein interactions for RNA: ENST00000367253.8

SYNE1-206, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 5,189 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-206ENST00000367253 A0A0G2JLL6 359 aaPredicted RBP8.54□□□□□ -1.04
SYNE1-206ENST00000367253 B4DGG1 531 aa8.54□□□□□ -1.04
SYNE1-206ENST00000367253 H3BQF6 201 aa8.54□□□□□ -1.04
SYNE1-206ENST00000367253 IRF2P14316 349 aa8.54□□□□□ -1.04
SYNE1-206ENST00000367253 ZNF14P17017 642 aaPredicted RBP8.54□□□□□ -1.04
SYNE1-206ENST00000367253 PTPN1P18031 435 aaKnown RBP8.54□□□□□ -1.04
SYNE1-206ENST00000367253 SREBF1P36956 1147 aa8.54□□□□□ -1.04
SYNE1-206ENST00000367253 ACTR1BP42025 376 aa8.54□□□□□ -1.04
SYNE1-206ENST00000367253 TOB1P50616 345 aaPredicted RBP8.54□□□□□ -1.04
SYNE1-206ENST00000367253 NOVA1P51513 510 aaKnown RBP8.54□□□□□ -1.04
SYNE1-206ENST00000367253 RAB5BP61020 215 aa8.54□□□□□ -1.04
SYNE1-206ENST00000367253 AGKQ53H12 422 aa8.54□□□□□ -1.04
SYNE1-206ENST00000367253 PRRT2Q7Z6L0 340 aaPredicted RBP8.54□□□□□ -1.04
SYNE1-206ENST00000367253 FAM228AQ86W67 206 aa8.54□□□□□ -1.04
SYNE1-206ENST00000367253 ZFPM1Q8IX07 1006 aa8.54□□□□□ -1.04
SYNE1-206ENST00000367253 ALDH16A1Q8IZ83 802 aa8.54□□□□□ -1.04
SYNE1-206ENST00000367253 TNFRSF25Q93038 417 aa8.54□□□□□ -1.04
SYNE1-206ENST00000367253 VAT1Q99536 393 aa8.54□□□□□ -1.04
SYNE1-206ENST00000367253 PCBD2Q9H0N5 130 aa8.54□□□□□ -1.04
SYNE1-206ENST00000367253 SRMSQ9H3Y6 488 aa8.54□□□□□ -1.04
SYNE1-206ENST00000367253 HCN2Q9UL51 889 aa8.54□□□□□ -1.04
SYNE1-206ENST00000367253 DERAQ9Y315 318 aa8.54□□□□□ -1.04
SYNE1-206ENST00000367253 PCDHGA8Q9Y5G5 932 aa8.54□□□□□ -1.04
SYNE1-206ENST00000367253 PCDHA2Q9Y5H9 948 aa8.54□□□□□ -1.04
SYNE1-206ENST00000367253 EDDM13A0A1B0GTR0 161 aa8.54□□□□□ -1.04
SYNE1-206ENST00000367253 ILVBLA1L0T0 632 aa8.54□□□□□ -1.04
SYNE1-206ENST00000367253 HYKKA2RU49 373 aa8.54□□□□□ -1.04
SYNE1-206ENST00000367253 C12orf71A8MTZ7 269 aa8.54□□□□□ -1.04
SYNE1-206ENST00000367253 FCHO1O14526 889 aa8.54□□□□□ -1.04
SYNE1-206ENST00000367253 CD2P06729 351 aa8.54□□□□□ -1.04
SYNE1-206ENST00000367253 SPARCP09486 303 aa8.54□□□□□ -1.04
SYNE1-206ENST00000367253 MAPTP10636 758 aaKnown RBP8.54□□□□□ -1.04
SYNE1-206ENST00000367253 SLC7A1P30825 629 aa8.54□□□□□ -1.04
SYNE1-206ENST00000367253 MAT2AP31153 395 aaKnown RBP8.54□□□□□ -1.04
SYNE1-206ENST00000367253 RAB28P51157 221 aa8.54□□□□□ -1.04
SYNE1-206ENST00000367253 MAZP56270 477 aaKnown RBP8.54□□□□□ -1.04
SYNE1-206ENST00000367253 RAB15P59190 212 aa8.54□□□□□ -1.04
SYNE1-206ENST00000367253 RNF4P78317 190 aa8.54□□□□□ -1.04
SYNE1-206ENST00000367253 TROAPQ12815 778 aa8.54□□□□□ -1.04
SYNE1-206ENST00000367253 FOXC1Q12948 553 aa8.54□□□□□ -1.04
SYNE1-206ENST00000367253 MAPK7Q13164 816 aa8.54□□□□□ -1.04
SYNE1-206ENST00000367253 PDK3Q15120 406 aa8.54□□□□□ -1.04
SYNE1-206ENST00000367253 PYDC2Q56P42 97 aa8.54□□□□□ -1.04
SYNE1-206ENST00000367253 RAB12Q6IQ22 244 aa8.54□□□□□ -1.04
SYNE1-206ENST00000367253 PAPD4Q6PIY7 484 aaKnown RBP8.54□□□□□ -1.04
SYNE1-206ENST00000367253 MIER2Q8N344 545 aa8.54□□□□□ -1.04
SYNE1-206ENST00000367253 ZNF563Q8TA94 476 aa8.54□□□□□ -1.04
SYNE1-206ENST00000367253 EDAQ92838 391 aa8.54□□□□□ -1.04
SYNE1-206ENST00000367253 ECHDC3Q96DC8 303 aa8.54□□□□□ -1.04
SYNE1-206ENST00000367253 RBM18Q96H35 190 aaKnown RBP8.54□□□□□ -1.04
SYNE1-206ENST00000367253 ALPK1Q96QP1 1244 aa8.54□□□□□ -1.04
SYNE1-206ENST00000367253 PRKAG3Q9UGI9 489 aa8.54□□□□□ -1.04
SYNE1-206ENST00000367253 RARRES3Q9UL19 164 aa8.54□□□□□ -1.04
SYNE1-206ENST00000367253 PIAS3Q9Y6X2 628 aa8.54□□□□□ -1.04
SYNE1-206ENST00000367253 A8MX80 341 aa8.53□□□□□ -1.04
SYNE1-206ENST00000367253 PLOD3O60568 738 aa8.53□□□□□ -1.04
SYNE1-206ENST00000367253 GIMD1P0DJR0 217 aa8.53□□□□□ -1.04
SYNE1-206ENST00000367253 SPAM1P38567 509 aa8.53□□□□□ -1.04
SYNE1-206ENST00000367253 KCNJ1P48048 391 aa8.53□□□□□ -1.04
SYNE1-206ENST00000367253 VPS26BQ4G0F5 336 aa8.53□□□□□ -1.04
SYNE1-206ENST00000367253 GTF2IRD2BQ6EKJ0 949 aa8.53□□□□□ -1.04
SYNE1-206ENST00000367253 CHSY3Q70JA7 882 aa8.53□□□□□ -1.04
SYNE1-206ENST00000367253 GLT6D1Q7Z4J2 308 aa8.53□□□□□ -1.04
SYNE1-206ENST00000367253 GTF2IRD2Q86UP8 949 aa8.53□□□□□ -1.04
SYNE1-206ENST00000367253 L3MBTL4Q8NA19 623 aa8.53□□□□□ -1.04
SYNE1-206ENST00000367253 ARMC5Q96C12 935 aa8.53□□□□□ -1.04
SYNE1-206ENST00000367253 SCML1Q9UN30 329 aa8.53□□□□□ -1.04
SYNE1-206ENST00000367253 ZNF705EA8MWA4 302 aaPredicted RBP8.53□□□□□ -1.04
SYNE1-206ENST00000367253 NPIPA2E9PIF3 369 aa8.53□□□□□ -1.04
SYNE1-206ENST00000367253 NPIPA5E9PKD4 350 aa8.53□□□□□ -1.04
SYNE1-206ENST00000367253 NPIPA3F8WFD2 350 aa8.53□□□□□ -1.04
SYNE1-206ENST00000367253 AIPO00170 330 aa8.53□□□□□ -1.04
SYNE1-206ENST00000367253 FBP2O00757 339 aa8.53□□□□□ -1.04
SYNE1-206ENST00000367253 UBDO15205 165 aa8.53□□□□□ -1.04
SYNE1-206ENST00000367253 GMDSO60547 372 aa8.53□□□□□ -1.04
SYNE1-206ENST00000367253 IL12BP29460 328 aa8.53□□□□□ -1.04
SYNE1-206ENST00000367253 NMT1P30419 496 aaKnown RBP8.53□□□□□ -1.04
SYNE1-206ENST00000367253 RORAP35398 523 aa8.53□□□□□ -1.04
SYNE1-206ENST00000367253 BUD31P41223 144 aaPredicted RBP8.53□□□□□ -1.04
SYNE1-206ENST00000367253 SMSP52788 366 aa8.53□□□□□ -1.04
SYNE1-206ENST00000367253 ZNF280AP59817 542 aaPredicted RBP8.53□□□□□ -1.04
SYNE1-206ENST00000367253 RPL19P84098 196 aaKnown RBP8.53□□□□□ -1.04
SYNE1-206ENST00000367253 LBX2Q6XYB7 198 aa8.53□□□□□ -1.04
SYNE1-206ENST00000367253 YTHDF3Q7Z739 585 aaKnown RBP8.53□□□□□ -1.04
SYNE1-206ENST00000367253 KIF18BQ86Y91 864 aa8.53□□□□□ -1.04
SYNE1-206ENST00000367253 TC2NQ8N9U0 490 aa8.53□□□□□ -1.04
SYNE1-206ENST00000367253 EPS8L1Q8TE68 723 aa8.53□□□□□ -1.04
SYNE1-206ENST00000367253 NR4A3Q92570 626 aa8.53□□□□□ -1.04
SYNE1-206ENST00000367253 TEKT5Q96M29 485 aa8.53□□□□□ -1.04
SYNE1-206ENST00000367253 HERPUD2Q9BSE4 406 aa8.53□□□□□ -1.04
SYNE1-206ENST00000367253 TRHDEQ9UKU6 1024 aa8.53□□□□□ -1.04
SYNE1-206ENST00000367253 ZNF214Q9UL59 606 aaPredicted RBP8.53□□□□□ -1.04
SYNE1-206ENST00000367253 NPIPA1Q9UND3 350 aa8.53□□□□□ -1.04
SYNE1-206ENST00000367253 SLC9A8Q9Y2E8 581 aa8.53□□□□□ -1.04
SYNE1-206ENST00000367253 NCF1BA6NI72 391 aaPredicted RBP8.53□□□□□ -1.04
SYNE1-206ENST00000367253 NCF1CA8MVU1 366 aaPredicted RBP8.53□□□□□ -1.04
SYNE1-206ENST00000367253 H3BQ06 376 aaPredicted RBP8.53□□□□□ -1.04
SYNE1-206ENST00000367253 FZD9O00144 591 aa8.53□□□□□ -1.04
SYNE1-206ENST00000367253 POU2F2P09086 479 aa8.53□□□□□ -1.04
SYNE1-206ENST00000367253 TMEM253P0C7T8 217 aa8.53□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms