RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 ZNF35P13682 527 aa4.04□□□□□ -1.76
USH2A-202ENST00000366942 CKMT2P17540 419 aa4.04□□□□□ -1.76
USH2A-202ENST00000366942 CYP3A7P24462 503 aa4.04□□□□□ -1.76
USH2A-202ENST00000366942 TNFSF9P41273 254 aa4.04□□□□□ -1.76
USH2A-202ENST00000366942 COASYQ13057 564 aa4.04□□□□□ -1.76
USH2A-202ENST00000366942 MTAPQ13126 283 aa4.04□□□□□ -1.76
USH2A-202ENST00000366942 KRT71Q3SY84 523 aa4.04□□□□□ -1.76
USH2A-202ENST00000366942 ALKBH5Q6P6C2 394 aaKnown RBP4.04□□□□□ -1.76
USH2A-202ENST00000366942 RHBDF2Q6PJF5 856 aa4.04□□□□□ -1.76
USH2A-202ENST00000366942 KDELC1Q6UW63 502 aa4.04□□□□□ -1.76
USH2A-202ENST00000366942 DPY19L3Q6ZPD9 716 aa4.04□□□□□ -1.76
USH2A-202ENST00000366942 CCDC121Q6ZUS5 278 aa4.04□□□□□ -1.76
USH2A-202ENST00000366942 SLC46A3Q7Z3Q1 461 aa4.04□□□□□ -1.76
USH2A-202ENST00000366942 PIWIL3Q7Z3Z3 882 aaKnown RBP4.04□□□□□ -1.76
USH2A-202ENST00000366942 ADAMTSL2Q86TH1 951 aa4.04□□□□□ -1.76
USH2A-202ENST00000366942 LRRC6Q86X45 466 aa4.04□□□□□ -1.76
USH2A-202ENST00000366942 GATAD2AQ86YP4 633 aa4.04□□□□□ -1.76
USH2A-202ENST00000366942 KIAA0319LQ8IZA0 1049 aa4.04□□□□□ -1.76
USH2A-202ENST00000366942 CNEP1R1Q8N9A8 125 aa4.04□□□□□ -1.76
USH2A-202ENST00000366942 SMPDL3AQ92484 453 aa4.04□□□□□ -1.76
USH2A-202ENST00000366942 EZH1Q92800 747 aaPredicted RBP4.04□□□□□ -1.76
USH2A-202ENST00000366942 ZSCAN5AQ9BUG6 496 aa4.04□□□□□ -1.76
USH2A-202ENST00000366942 MVB12BQ9H7P6 319 aa4.04□□□□□ -1.76
USH2A-202ENST00000366942 MS4A12Q9NXJ0 267 aa4.04□□□□□ -1.76
USH2A-202ENST00000366942 GMIPQ9P107 970 aa4.04□□□□□ -1.76
USH2A-202ENST00000366942 A0A087WUU8 490 aa4.04□□□□□ -1.76
USH2A-202ENST00000366942 PGRMC1O00264 195 aaKnown RBP4.04□□□□□ -1.76
USH2A-202ENST00000366942 CILPO75339 1184 aa4.04□□□□□ -1.76
USH2A-202ENST00000366942 KHDRBS3O75525 346 aaKnown RBP4.04□□□□□ -1.76
USH2A-202ENST00000366942 ALBP02768 609 aa4.04□□□□□ -1.76
USH2A-202ENST00000366942 ENO1P06733 434 aaKnown RBP4.04□□□□□ -1.76
USH2A-202ENST00000366942 LAMP2P13473 410 aa4.04□□□□□ -1.76
USH2A-202ENST00000366942 CPA1P15085 419 aa4.04□□□□□ -1.76
USH2A-202ENST00000366942 CYP11B1P15538 503 aa4.04□□□□□ -1.76
USH2A-202ENST00000366942 PAX7P23759 505 aa4.04□□□□□ -1.76
USH2A-202ENST00000366942 ICAM3P32942 547 aa4.04□□□□□ -1.76
USH2A-202ENST00000366942 CRISP1P54107 249 aa4.04□□□□□ -1.76
USH2A-202ENST00000366942 ATXN1P54253 815 aaKnown RBP4.04□□□□□ -1.76
USH2A-202ENST00000366942 TMBIM6P55061 237 aa4.04□□□□□ -1.76
USH2A-202ENST00000366942 RGS8P57771 180 aaPredicted RBP4.04□□□□□ -1.76
USH2A-202ENST00000366942 ZXDAP98168 799 aa4.04□□□□□ -1.76
USH2A-202ENST00000366942 MPP3Q13368 585 aa4.04□□□□□ -1.76
USH2A-202ENST00000366942 CLPPQ16740 277 aaPredicted RBP4.04□□□□□ -1.76
USH2A-202ENST00000366942 LY6G5CQ5SRR4 150 aa4.04□□□□□ -1.76
USH2A-202ENST00000366942 SWT1Q5T5J6 900 aaKnown RBP4.04□□□□□ -1.76
USH2A-202ENST00000366942 THOC7Q6I9Y2 204 aaKnown RBP4.04□□□□□ -1.76
USH2A-202ENST00000366942 TAPT1Q6NXT6 567 aa4.04□□□□□ -1.76
USH2A-202ENST00000366942 SPESP1Q6UW49 350 aa4.04□□□□□ -1.76
USH2A-202ENST00000366942 PRSS55Q6UWB4 352 aaPredicted RBP4.04□□□□□ -1.76
USH2A-202ENST00000366942 RAD9BQ6WBX8 426 aa4.04□□□□□ -1.76
USH2A-202ENST00000366942 C12orf54Q6X4T0 127 aa4.04□□□□□ -1.76
USH2A-202ENST00000366942 DEF8Q6ZN54 512 aa4.04□□□□□ -1.76
USH2A-202ENST00000366942 CCDC80Q76M96 950 aa4.04□□□□□ -1.76
USH2A-202ENST00000366942 HNRNPLLQ8WVV9 542 aaKnown RBP4.04□□□□□ -1.76
USH2A-202ENST00000366942 HMCESQ96FZ2 354 aa4.04□□□□□ -1.76
USH2A-202ENST00000366942 PDCD10Q9BUL8 212 aa4.04□□□□□ -1.76
USH2A-202ENST00000366942 SLC4A5Q9BY07 1137 aa4.04□□□□□ -1.76
USH2A-202ENST00000366942 WNT8AQ9H1J5 351 aa4.04□□□□□ -1.76
USH2A-202ENST00000366942 CLMPQ9H6B4 373 aa4.04□□□□□ -1.76
USH2A-202ENST00000366942 EGLN3Q9H6Z9 239 aa4.04□□□□□ -1.76
USH2A-202ENST00000366942 ANKZF1Q9H8Y5 726 aa4.04□□□□□ -1.76
USH2A-202ENST00000366942 HEBP1Q9NRV9 189 aa4.04□□□□□ -1.76
USH2A-202ENST00000366942 GPR83Q9NYM4 423 aa4.04□□□□□ -1.76
USH2A-202ENST00000366942 IMPACTQ9P2X3 320 aa4.04□□□□□ -1.76
USH2A-202ENST00000366942 PLAAQ9Y263 795 aa4.04□□□□□ -1.76
USH2A-202ENST00000366942 ATP8A1Q9Y2Q0 1164 aa4.04□□□□□ -1.76
USH2A-202ENST00000366942 ABCA6Q8N139 1617 aa4.04□□□□□ -1.76
USH2A-202ENST00000366942 A0A1W2PQU0 124 aa4.04□□□□□ -1.76
USH2A-202ENST00000366942 SLC9B1P1A6NJY1 282 aa4.04□□□□□ -1.76
USH2A-202ENST00000366942 OR2AG2A6NM03 316 aa4.04□□□□□ -1.76
USH2A-202ENST00000366942 PP2D1A8MPX8 630 aa4.04□□□□□ -1.76
USH2A-202ENST00000366942 PRSS44E7EML9 344 aa4.04□□□□□ -1.76
USH2A-202ENST00000366942 CLPTM1O96005 669 aa4.04□□□□□ -1.76
USH2A-202ENST00000366942 CKMT1AP12532 417 aa4.04□□□□□ -1.76
USH2A-202ENST00000366942 FGFR4P22455 802 aa4.04□□□□□ -1.76
USH2A-202ENST00000366942 PPIBP23284 216 aaKnown RBP4.04□□□□□ -1.76
USH2A-202ENST00000366942 HOXA9P31269 272 aa4.04□□□□□ -1.76
USH2A-202ENST00000366942 BCAP31P51572 246 aa4.04□□□□□ -1.76
USH2A-202ENST00000366942 GNB2P62879 340 aa4.04□□□□□ -1.76
USH2A-202ENST00000366942 GPLD1P80108 840 aa4.04□□□□□ -1.76
USH2A-202ENST00000366942 PRR5P85299 388 aa4.04□□□□□ -1.76
USH2A-202ENST00000366942 FOLH1Q04609 750 aa4.04□□□□□ -1.76
USH2A-202ENST00000366942 FOXD4Q12950 439 aaPredicted RBP4.04□□□□□ -1.76
USH2A-202ENST00000366942 PTGR1Q14914 329 aa4.04□□□□□ -1.76
USH2A-202ENST00000366942 NKPD1Q17RQ9 610 aa4.04□□□□□ -1.76
USH2A-202ENST00000366942 TMPRSS12Q86WS5 348 aa4.04□□□□□ -1.76
USH2A-202ENST00000366942 CMTM8Q8IZV2 173 aa4.04□□□□□ -1.76
USH2A-202ENST00000366942 C1orf87Q8N0U7 546 aa4.04□□□□□ -1.76
USH2A-202ENST00000366942 ZNF398Q8TD17 642 aa4.04□□□□□ -1.76
USH2A-202ENST00000366942 RNFT2Q96EX2 444 aa4.04□□□□□ -1.76
USH2A-202ENST00000366942 RBP7Q96R05 134 aa4.04□□□□□ -1.76
USH2A-202ENST00000366942 MIPEPQ99797 713 aa4.04□□□□□ -1.76
USH2A-202ENST00000366942 RUSC1Q9BVN2 902 aa4.04□□□□□ -1.76
USH2A-202ENST00000366942 ABCB8Q9NUT2 735 aa4.04□□□□□ -1.76
USH2A-202ENST00000366942 STON1Q9Y6Q2 735 aa4.04□□□□□ -1.76
USH2A-202ENST00000366942 EXOC1LA0A1B0GW35 172 aa4.04□□□□□ -1.76
USH2A-202ENST00000366942 DUXAA6NLW8 204 aa4.04□□□□□ -1.76
USH2A-202ENST00000366942 TCP11X1B4DZS4 312 aa4.04□□□□□ -1.76
USH2A-202ENST00000366942 MANBAO00462 879 aa4.04□□□□□ -1.76
USH2A-202ENST00000366942 RAB36O95755 333 aa4.04□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms