RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 SEPHS1P49903 392 aa17.96■□□□□ 0.47
CLN3-202ENST00000355477 RAB15P59190 212 aa17.96■□□□□ 0.47
CLN3-202ENST00000355477 SKIDA1Q1XH10 827 aa17.96■□□□□ 0.47
CLN3-202ENST00000355477 MANEAQ5SRI9 462 aa17.96■□□□□ 0.47
CLN3-202ENST00000355477 CAPRIN2Q6IMN6 1127 aaKnown RBP17.96■□□□□ 0.47
CLN3-202ENST00000355477 FAM92BQ6ZTR7 304 aa17.96■□□□□ 0.47
CLN3-202ENST00000355477 OR13J1Q8NGT2 312 aa17.96■□□□□ 0.47
CLN3-202ENST00000355477 HM13Q8TCT9 377 aa17.96■□□□□ 0.47
CLN3-202ENST00000355477 ZNF778Q96MU6 729 aa17.96■□□□□ 0.47
CLN3-202ENST00000355477 GRPEL1Q9HAV7 217 aa17.96■□□□□ 0.47
CLN3-202ENST00000355477 SIDT1Q9NXL6 827 aaKnown RBP17.96■□□□□ 0.47
CLN3-202ENST00000355477 PAK5Q9P286 719 aa17.96■□□□□ 0.47
CLN3-202ENST00000355477 EPHA6Q9UF33 1036 aa17.96■□□□□ 0.47
CLN3-202ENST00000355477 ZKSCAN5Q9Y2L8 839 aa17.96■□□□□ 0.47
CLN3-202ENST00000355477 PRSS21Q9Y6M0 314 aa17.96■□□□□ 0.47
CLN3-202ENST00000355477 C17orf113A0A1B0GUU1 675 aa17.95■□□□□ 0.46
CLN3-202ENST00000355477 PRB1P04280 392 aa17.95■□□□□ 0.46
CLN3-202ENST00000355477 SLC35G4P0C7Q5 338 aa17.95■□□□□ 0.46
CLN3-202ENST00000355477 FOXN2P32314 431 aa17.95■□□□□ 0.46
CLN3-202ENST00000355477 CACHD1Q5VU97 1274 aa17.95■□□□□ 0.46
CLN3-202ENST00000355477 IRGCQ6NXR0 463 aa17.95■□□□□ 0.46
CLN3-202ENST00000355477 SLC39A7Q92504 469 aa17.95■□□□□ 0.46
CLN3-202ENST00000355477 TTC9Q92623 222 aa17.95■□□□□ 0.46
CLN3-202ENST00000355477 HDAC10Q969S8 669 aa17.95■□□□□ 0.46
CLN3-202ENST00000355477 ZDHHC12Q96GR4 267 aa17.95■□□□□ 0.46
CLN3-202ENST00000355477 CCM2Q9BSQ5 444 aa17.95■□□□□ 0.46
CLN3-202ENST00000355477 RAB33BQ9H082 229 aa17.95■□□□□ 0.46
CLN3-202ENST00000355477 SMARCAL1Q9NZC9 954 aa17.95■□□□□ 0.46
CLN3-202ENST00000355477 PILRAQ9UKJ1 303 aa17.95■□□□□ 0.46
CLN3-202ENST00000355477 BAHCC1Q9P281 2608 aa17.95■□□□□ 0.46
CLN3-202ENST00000355477 SPTBP11277 2137 aa17.95■□□□□ 0.46
CLN3-202ENST00000355477 HEATR9A2RTY3 570 aa17.94■□□□□ 0.46
CLN3-202ENST00000355477 TOX3O15405 576 aaPredicted RBP17.94■□□□□ 0.46
CLN3-202ENST00000355477 NRDCO43847 1150 aa17.94■□□□□ 0.46
CLN3-202ENST00000355477 RASSF9O75901 435 aa17.94■□□□□ 0.46
CLN3-202ENST00000355477 GAS8O95995 478 aa17.94■□□□□ 0.46
CLN3-202ENST00000355477 ADRA1DP25100 572 aa17.94■□□□□ 0.46
CLN3-202ENST00000355477 PDHA2P29803 388 aa17.94■□□□□ 0.46
CLN3-202ENST00000355477 SH3BP2P78314 561 aa17.94■□□□□ 0.46
CLN3-202ENST00000355477 RHDQ02161 417 aa17.94■□□□□ 0.46
CLN3-202ENST00000355477 GSE1Q14687 1217 aa17.94■□□□□ 0.46
CLN3-202ENST00000355477 PLCL1Q15111 1095 aa17.94■□□□□ 0.46
CLN3-202ENST00000355477 TSTD2Q5T7W7 516 aa17.94■□□□□ 0.46
CLN3-202ENST00000355477 CEACAM20Q6UY09 585 aa17.94■□□□□ 0.46
CLN3-202ENST00000355477 PRSS42Q7Z5A4 293 aa17.94■□□□□ 0.46
CLN3-202ENST00000355477 PRELID2Q8N945 189 aa17.94■□□□□ 0.46
CLN3-202ENST00000355477 MAIP1Q8WWC4 291 aa17.94■□□□□ 0.46
CLN3-202ENST00000355477 TEFMQ96QE5 360 aaKnown RBP17.94■□□□□ 0.46
CLN3-202ENST00000355477 RANBP9Q96S59 729 aa17.94■□□□□ 0.46
CLN3-202ENST00000355477 ZNF768Q9H5H4 540 aaKnown RBP17.94■□□□□ 0.46
CLN3-202ENST00000355477 COG4Q9H9E3 785 aa17.94■□□□□ 0.46
CLN3-202ENST00000355477 SLC24A2Q9UI40 661 aa17.94■□□□□ 0.46
CLN3-202ENST00000355477 COL6A6A6NMZ7 2263 aa17.93■□□□□ 0.46
CLN3-202ENST00000355477 BOD1L1Q8NFC6 3051 aa17.93■□□□□ 0.46
CLN3-202ENST00000355477 ERVH48-1M5A8F1 160 aa17.93■□□□□ 0.46
CLN3-202ENST00000355477 POLR1CO15160 346 aaPredicted RBP17.93■□□□□ 0.46
CLN3-202ENST00000355477 FOXM1Q08050 763 aa17.93■□□□□ 0.46
CLN3-202ENST00000355477 GSTA5Q7RTV2 222 aa17.93■□□□□ 0.46
CLN3-202ENST00000355477 TIPARPQ7Z3E1 657 aaKnown RBP17.93■□□□□ 0.46
CLN3-202ENST00000355477 REXO1L1PQ8IX06 675 aa17.93■□□□□ 0.46
CLN3-202ENST00000355477 CACNA2D3Q8IZS8 1091 aa17.93■□□□□ 0.46
CLN3-202ENST00000355477 LSM14AQ8ND56 463 aaKnown RBP17.93■□□□□ 0.46
CLN3-202ENST00000355477 ZFPM2Q8WW38 1151 aa17.93■□□□□ 0.46
CLN3-202ENST00000355477 KLHL6Q8WZ60 621 aa17.93■□□□□ 0.46
CLN3-202ENST00000355477 RNF31Q96EP0 1072 aa17.93■□□□□ 0.46
CLN3-202ENST00000355477 OR52A5Q9H2C5 316 aa17.93■□□□□ 0.46
CLN3-202ENST00000355477 KIR3DX1Q9H7L2 352 aa17.93■□□□□ 0.46
CLN3-202ENST00000355477 RIMKLBQ9ULI2 386 aa17.93■□□□□ 0.46
CLN3-202ENST00000355477 TCAF1Q9Y4C2 921 aa17.93■□□□□ 0.46
CLN3-202ENST00000355477 PCDHGA4Q9Y5G9 962 aa17.93■□□□□ 0.46
CLN3-202ENST00000355477 IGHV5-51A0A0C4DH38 117 aa17.92■□□□□ 0.46
CLN3-202ENST00000355477 TK2O00142 265 aa17.92■□□□□ 0.46
CLN3-202ENST00000355477 OR1I1O60431 355 aa17.92■□□□□ 0.46
CLN3-202ENST00000355477 RAD1O60671 282 aa17.92■□□□□ 0.46
CLN3-202ENST00000355477 GOT2P00505 430 aaKnown RBP17.92■□□□□ 0.46
CLN3-202ENST00000355477 NSG1P42857 185 aa17.92■□□□□ 0.46
CLN3-202ENST00000355477 PREPP48147 710 aa17.92■□□□□ 0.46
CLN3-202ENST00000355477 CRADDP78560 199 aa17.92■□□□□ 0.46
CLN3-202ENST00000355477 ACVR1Q04771 509 aa17.92■□□□□ 0.46
CLN3-202ENST00000355477 LAMB3Q13751 1172 aa17.92■□□□□ 0.46
CLN3-202ENST00000355477 PACS1Q6VY07 963 aa17.92■□□□□ 0.46
CLN3-202ENST00000355477 ZNF534Q76KX8 674 aa17.92■□□□□ 0.46
CLN3-202ENST00000355477 PHC3Q8NDX5 983 aa17.92■□□□□ 0.46
CLN3-202ENST00000355477 MS4A14Q96JA4 679 aa17.92■□□□□ 0.46
CLN3-202ENST00000355477 OR6C1Q96RD1 312 aa17.92■□□□□ 0.46
CLN3-202ENST00000355477 NRTNQ99748 197 aa17.92■□□□□ 0.46
CLN3-202ENST00000355477 ZPBPQ9BS86 351 aa17.92■□□□□ 0.46
CLN3-202ENST00000355477 EIF2B3Q9NR50 452 aaKnown RBP17.92■□□□□ 0.46
CLN3-202ENST00000355477 CHRAC1Q9NRG0 131 aa17.92■□□□□ 0.46
CLN3-202ENST00000355477 HRASLS2Q9NWW9 162 aa17.92■□□□□ 0.46
CLN3-202ENST00000355477 SEMA5BQ9P283 1151 aa17.92■□□□□ 0.46
CLN3-202ENST00000355477 TMEM184BQ9Y519 407 aaPredicted RBP17.92■□□□□ 0.46
CLN3-202ENST00000355477 COLEC10Q9Y6Z7 277 aa17.92■□□□□ 0.46
CLN3-202ENST00000355477 HELZ2Q9BYK8 2649 aaKnown RBP17.92■□□□□ 0.46
CLN3-202ENST00000355477 SNRNP200O75643 2136 aaKnown RBP17.92■□□□□ 0.46
CLN3-202ENST00000355477 TLN1Q9Y490 2541 aaKnown RBP17.92■□□□□ 0.46
CLN3-202ENST00000355477 ZNF462Q96JM2 2506 aa17.91■□□□□ 0.46
CLN3-202ENST00000355477 OR6C74A6NCV1 312 aa17.91■□□□□ 0.46
CLN3-202ENST00000355477 OR5K3A6NET4 321 aa17.91■□□□□ 0.46
CLN3-202ENST00000355477 EIF4E1BA6NMX2 242 aaKnown RBP17.91■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms