RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 LAMA1P25391 3075 aa10.18□□□□□ -0.78
LIMA1-201ENST00000341247 H7C0S8 307 aa10.17□□□□□ -0.78
LIMA1-201ENST00000341247 LEFTY2O00292 366 aa10.17□□□□□ -0.78
LIMA1-201ENST00000341247 RFPL2O75678 378 aa10.17□□□□□ -0.78
LIMA1-201ENST00000341247 GNRH1P01148 92 aa10.17□□□□□ -0.78
LIMA1-201ENST00000341247 PSMA4P25789 261 aaKnown RBP10.17□□□□□ -0.78
LIMA1-201ENST00000341247 ZFP36L2P47974 494 aaKnown RBP10.17□□□□□ -0.78
LIMA1-201ENST00000341247 BOP1Q14137 746 aaKnown RBP10.17□□□□□ -0.78
LIMA1-201ENST00000341247 PABPC1LQ4VXU2 614 aaKnown RBP10.17□□□□□ -0.78
LIMA1-201ENST00000341247 XKR7Q5GH72 579 aa10.17□□□□□ -0.78
LIMA1-201ENST00000341247 ZNF648Q5T619 568 aaPredicted RBP10.17□□□□□ -0.78
LIMA1-201ENST00000341247 NANOGP8Q6NSW7 305 aa10.17□□□□□ -0.78
LIMA1-201ENST00000341247 Q6ZVU0 165 aa10.17□□□□□ -0.78
LIMA1-201ENST00000341247 ITIH5Q86UX2 942 aa10.17□□□□□ -0.78
LIMA1-201ENST00000341247 TMEM25Q86YD3 366 aa10.17□□□□□ -0.78
LIMA1-201ENST00000341247 ZBTB2Q8N680 514 aa10.17□□□□□ -0.78
LIMA1-201ENST00000341247 CHST14Q8NCH0 376 aa10.17□□□□□ -0.78
LIMA1-201ENST00000341247 RIN3Q8TB24 985 aa10.17□□□□□ -0.78
LIMA1-201ENST00000341247 TMEM125Q96AQ2 219 aa10.17□□□□□ -0.78
LIMA1-201ENST00000341247 ULK4Q96C45 1275 aa10.17□□□□□ -0.78
LIMA1-201ENST00000341247 ZNF382Q96SR6 550 aa10.17□□□□□ -0.78
LIMA1-201ENST00000341247 NANOGQ9H9S0 305 aa10.17□□□□□ -0.78
LIMA1-201ENST00000341247 MATN4O95460 622 aa10.17□□□□□ -0.78
LIMA1-201ENST00000341247 GNAO1P09471 354 aa10.17□□□□□ -0.78
LIMA1-201ENST00000341247 ACRV1P26436 265 aa10.17□□□□□ -0.78
LIMA1-201ENST00000341247 SERPINA4P29622 427 aa10.17□□□□□ -0.78
LIMA1-201ENST00000341247 CCR2P41597 374 aa10.17□□□□□ -0.78
LIMA1-201ENST00000341247 OR4D2P58180 307 aa10.17□□□□□ -0.78
LIMA1-201ENST00000341247 RCAN2Q14206 197 aa10.17□□□□□ -0.78
LIMA1-201ENST00000341247 ATP13A5Q4VNC0 1218 aa10.17□□□□□ -0.78
LIMA1-201ENST00000341247 CRTC1Q6UUV9 634 aa10.17□□□□□ -0.78
LIMA1-201ENST00000341247 CYP20A1Q6UW02 462 aa10.17□□□□□ -0.78
LIMA1-201ENST00000341247 HACD2Q6Y1H2 254 aa10.17□□□□□ -0.78
LIMA1-201ENST00000341247 DPY19L3Q6ZPD9 716 aa10.17□□□□□ -0.78
LIMA1-201ENST00000341247 SPATA19Q7Z5L4 167 aa10.17□□□□□ -0.78
LIMA1-201ENST00000341247 OR2AP1Q8NGE2 309 aa10.17□□□□□ -0.78
LIMA1-201ENST00000341247 TRAPPC9Q96Q05 1148 aa10.17□□□□□ -0.78
LIMA1-201ENST00000341247 SLC52A3Q9NQ40 469 aa10.17□□□□□ -0.78
LIMA1-201ENST00000341247 OPTCQ9UBM4 332 aa10.17□□□□□ -0.78
LIMA1-201ENST00000341247 NUP214P35658 2090 aaPredicted RBP10.17□□□□□ -0.78
LIMA1-201ENST00000341247 LOC730098B7Z3J9 87 aa10.17□□□□□ -0.78
LIMA1-201ENST00000341247 VPS4BO75351 444 aa10.17□□□□□ -0.78
LIMA1-201ENST00000341247 SH3BGRLO75368 114 aa10.17□□□□□ -0.78
LIMA1-201ENST00000341247 FGF18O76093 207 aa10.17□□□□□ -0.78
LIMA1-201ENST00000341247 CXCL14O95715 111 aa10.17□□□□□ -0.78
LIMA1-201ENST00000341247 SRCP12931 536 aa10.17□□□□□ -0.78
LIMA1-201ENST00000341247 IL10P22301 178 aa10.17□□□□□ -0.78
LIMA1-201ENST00000341247 SPAM1P38567 509 aa10.17□□□□□ -0.78
LIMA1-201ENST00000341247 NEK2P51955 445 aa10.17□□□□□ -0.78
LIMA1-201ENST00000341247 CDH15P55291 814 aa10.17□□□□□ -0.78
LIMA1-201ENST00000341247 GRM2Q14416 872 aa10.17□□□□□ -0.78
LIMA1-201ENST00000341247 INPP5AQ14642 412 aa10.17□□□□□ -0.78
LIMA1-201ENST00000341247 ZNF697Q5TEC3 545 aa10.17□□□□□ -0.78
LIMA1-201ENST00000341247 RBM44Q6ZP01 1051 aaKnown RBP10.17□□□□□ -0.78
LIMA1-201ENST00000341247 CMTR2Q8IYT2 770 aaKnown RBP10.17□□□□□ -0.78
LIMA1-201ENST00000341247 SLC22A15Q8IZD6 547 aa10.17□□□□□ -0.78
LIMA1-201ENST00000341247 MINDY1Q8N5J2 469 aa10.17□□□□□ -0.78
LIMA1-201ENST00000341247 METTL25Q8N6Q8 603 aa10.17□□□□□ -0.78
LIMA1-201ENST00000341247 TBCDQ9BTW9 1192 aa10.17□□□□□ -0.78
LIMA1-201ENST00000341247 NUSAP1Q9BXS6 441 aaKnown RBP10.17□□□□□ -0.78
LIMA1-201ENST00000341247 KIAA1522Q9P206 1035 aaPredicted RBP10.17□□□□□ -0.78
LIMA1-201ENST00000341247 LEF1Q9UJU2 399 aaPredicted RBP10.17□□□□□ -0.78
LIMA1-201ENST00000341247 STOML2Q9UJZ1 356 aa10.17□□□□□ -0.78
LIMA1-201ENST00000341247 PCDHB1Q9Y5F3 818 aa10.17□□□□□ -0.78
LIMA1-201ENST00000341247 PCDHA9Q9Y5H5 950 aa10.17□□□□□ -0.78
LIMA1-201ENST00000341247 GBF1Q92538 1859 aa10.16□□□□□ -0.78
LIMA1-201ENST00000341247 KIAA1671Q9BY89 1806 aa10.16□□□□□ -0.78
LIMA1-201ENST00000341247 CLGNO14967 610 aa10.16□□□□□ -0.78
LIMA1-201ENST00000341247 LHCGRP22888 699 aa10.16□□□□□ -0.78
LIMA1-201ENST00000341247 DGKAP23743 735 aa10.16□□□□□ -0.78
LIMA1-201ENST00000341247 AKT1P31749 480 aa10.16□□□□□ -0.78
LIMA1-201ENST00000341247 TRAF3Q13114 568 aa10.16□□□□□ -0.78
LIMA1-201ENST00000341247 PRKG2Q13237 762 aa10.16□□□□□ -0.78
LIMA1-201ENST00000341247 ARHGEF6Q15052 776 aa10.16□□□□□ -0.78
LIMA1-201ENST00000341247 IMPG1Q17R60 797 aa10.16□□□□□ -0.78
LIMA1-201ENST00000341247 LARP7Q4G0J3 582 aaKnown RBP eCLIP10.16□□□□□ -0.78
LIMA1-201ENST00000341247 NADK2Q4G0N4 442 aa10.16□□□□□ -0.78
LIMA1-201ENST00000341247 ASTLQ6HA08 431 aaPredicted RBP10.16□□□□□ -0.78
LIMA1-201ENST00000341247 OGFOD2Q6N063 350 aa10.16□□□□□ -0.78
LIMA1-201ENST00000341247 CERS6Q6ZMG9 384 aa10.16□□□□□ -0.78
LIMA1-201ENST00000341247 ANKRD33Q7Z3H0 272 aa10.16□□□□□ -0.78
LIMA1-201ENST00000341247 DDX53Q86TM3 631 aaKnown RBP10.16□□□□□ -0.78
LIMA1-201ENST00000341247 TMEM199Q8N511 208 aa10.16□□□□□ -0.78
LIMA1-201ENST00000341247 KRTCAP2Q8N6L1 136 aa10.16□□□□□ -0.78
LIMA1-201ENST00000341247 SCAMP4Q969E2 229 aa10.16□□□□□ -0.78
LIMA1-201ENST00000341247 HERC2P3Q9BVR0 1158 aa10.16□□□□□ -0.78
LIMA1-201ENST00000341247 LINC00597Q9H2U6 94 aa10.16□□□□□ -0.78
LIMA1-201ENST00000341247 DNMT3BQ9UBC3 853 aaKnown RBP10.16□□□□□ -0.78
LIMA1-201ENST00000341247 OAZ3Q9UMX2 235 aa10.16□□□□□ -0.78
LIMA1-201ENST00000341247 ZFC3H1O60293 1989 aaKnown RBP10.16□□□□□ -0.78
LIMA1-201ENST00000341247 UPK3BL1B0FP48 263 aa10.16□□□□□ -0.78
LIMA1-201ENST00000341247 UPK3BL2E5RIL1 263 aa10.16□□□□□ -0.78
LIMA1-201ENST00000341247 TFAP2AP05549 437 aa10.16□□□□□ -0.78
LIMA1-201ENST00000341247 PRR35P0CG20 571 aa10.16□□□□□ -0.78
LIMA1-201ENST00000341247 CRY1Q16526 586 aa10.16□□□□□ -0.78
LIMA1-201ENST00000341247 ZNF783Q6ZMS7 281 aa10.16□□□□□ -0.78
LIMA1-201ENST00000341247 BEND7Q8N7W2 519 aaPredicted RBP10.16□□□□□ -0.78
LIMA1-201ENST00000341247 FAM47BQ8NA70 645 aa10.16□□□□□ -0.78
LIMA1-201ENST00000341247 CYGBQ8WWM9 190 aa10.16□□□□□ -0.78
LIMA1-201ENST00000341247 GFM2Q969S9 779 aaKnown RBP10.16□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms