RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 SMIM28A0A1B0GU29 152 aa12.47□□□□□ -0.41
SDC3-201ENST00000336798 IPO13O94829 963 aaKnown RBP12.47□□□□□ -0.41
SDC3-201ENST00000336798 FCER2P06734 321 aa12.47□□□□□ -0.41
SDC3-201ENST00000336798 ZNF806P0C7X5 589 aa12.47□□□□□ -0.41
SDC3-201ENST00000336798 PPIBP23284 216 aaKnown RBP12.47□□□□□ -0.41
SDC3-201ENST00000336798 CLCN2P51788 898 aa12.47□□□□□ -0.41
SDC3-201ENST00000336798 NRG3P56975 720 aa12.47□□□□□ -0.41
SDC3-201ENST00000336798 CHIT1Q13231 466 aa12.47□□□□□ -0.41
SDC3-201ENST00000336798 FAM182AQ5T1J6 154 aa12.47□□□□□ -0.41
SDC3-201ENST00000336798 POTEHQ6S545 545 aa12.47□□□□□ -0.41
SDC3-201ENST00000336798 RASGRP3Q8IV61 690 aa12.47□□□□□ -0.41
SDC3-201ENST00000336798 FBXO22Q8NEZ5 403 aa12.47□□□□□ -0.41
SDC3-201ENST00000336798 ERVK-5Q9HDB9 667 aa12.47□□□□□ -0.41
SDC3-201ENST00000336798 CEMIPQ8WUJ3 1361 aa12.47□□□□□ -0.41
SDC3-201ENST00000336798 RIC1Q4ADV7 1423 aa12.47□□□□□ -0.41
SDC3-201ENST00000336798 CDC42BPAQ5VT25 1732 aa12.47□□□□□ -0.41
SDC3-201ENST00000336798 TTC34A8MYJ7 566 aa12.47□□□□□ -0.41
SDC3-201ENST00000336798 KHNYNO15037 678 aaKnown RBP12.47□□□□□ -0.41
SDC3-201ENST00000336798 STK16O75716 305 aa12.47□□□□□ -0.41
SDC3-201ENST00000336798 C2P06681 752 aa12.47□□□□□ -0.41
SDC3-201ENST00000336798 MYCLP1P12525 358 aaPredicted RBP12.47□□□□□ -0.41
SDC3-201ENST00000336798 LRRC38Q5VT99 294 aa12.47□□□□□ -0.41
SDC3-201ENST00000336798 EGFLAMQ63HQ2 1017 aa12.47□□□□□ -0.41
SDC3-201ENST00000336798 CERS5Q8N5B7 392 aa12.47□□□□□ -0.41
SDC3-201ENST00000336798 TIFAQ96CG3 184 aa12.47□□□□□ -0.41
SDC3-201ENST00000336798 FAM83DQ9H4H8 585 aa12.47□□□□□ -0.41
SDC3-201ENST00000336798 TRPS1Q9UHF7 1281 aa12.47□□□□□ -0.41
SDC3-201ENST00000336798 RAPGEFL1Q9UHV5 662 aa12.47□□□□□ -0.41
SDC3-201ENST00000336798 SHOX2O60902 331 aaPredicted RBP12.47□□□□□ -0.41
SDC3-201ENST00000336798 CD48P09326 243 aa12.47□□□□□ -0.41
SDC3-201ENST00000336798 ITGB5P18084 799 aa12.47□□□□□ -0.41
SDC3-201ENST00000336798 CES1P23141 567 aa12.47□□□□□ -0.41
SDC3-201ENST00000336798 CCKBRP32239 447 aa12.47□□□□□ -0.41
SDC3-201ENST00000336798 CLCN7P51798 805 aa12.47□□□□□ -0.41
SDC3-201ENST00000336798 GBE1Q04446 702 aa12.47□□□□□ -0.41
SDC3-201ENST00000336798 NOGQ13253 232 aa12.47□□□□□ -0.41
SDC3-201ENST00000336798 PAOXQ6QHF9 649 aa12.47□□□□□ -0.41
SDC3-201ENST00000336798 ZNF627Q7L945 461 aa12.47□□□□□ -0.41
SDC3-201ENST00000336798 LINGO2Q7L985 606 aa12.47□□□□□ -0.41
SDC3-201ENST00000336798 OR6K6Q8NGW6 343 aa12.47□□□□□ -0.41
SDC3-201ENST00000336798 HMGB4Q8WW32 186 aa12.47□□□□□ -0.41
SDC3-201ENST00000336798 SGCDQ92629 289 aa12.47□□□□□ -0.41
SDC3-201ENST00000336798 DPYSL5Q9BPU6 564 aa12.47□□□□□ -0.41
SDC3-201ENST00000336798 EIF2B4Q9UI10 523 aaKnown RBP12.47□□□□□ -0.41
SDC3-201ENST00000336798 CPQQ9Y646 472 aa12.47□□□□□ -0.41
SDC3-201ENST00000336798 CAMSAP1Q5T5Y3 1602 aa12.47□□□□□ -0.41
SDC3-201ENST00000336798 NRXN1Q9ULB1 1477 aa12.47□□□□□ -0.41
SDC3-201ENST00000336798 HYKKA2RU49 373 aa12.47□□□□□ -0.41
SDC3-201ENST00000336798 FADS2P1A8MWK0 482 aa12.47□□□□□ -0.41
SDC3-201ENST00000336798 NOBOXO60393 691 aa12.47□□□□□ -0.41
SDC3-201ENST00000336798 OR4F21O95013 312 aa12.47□□□□□ -0.41
SDC3-201ENST00000336798 BPGMP07738 259 aa12.47□□□□□ -0.41
SDC3-201ENST00000336798 F7P08709 466 aaPredicted RBP12.47□□□□□ -0.41
SDC3-201ENST00000336798 MSL3P1P0C860 447 aa12.47□□□□□ -0.41
SDC3-201ENST00000336798 CCNCP24863 283 aa12.47□□□□□ -0.41
SDC3-201ENST00000336798 NMBRP28336 390 aa12.47□□□□□ -0.41
SDC3-201ENST00000336798 VBP1P61758 197 aa12.47□□□□□ -0.41
SDC3-201ENST00000336798 CAP1Q01518 475 aa12.47□□□□□ -0.41
SDC3-201ENST00000336798 TEAD4Q15561 434 aa12.47□□□□□ -0.41
SDC3-201ENST00000336798 PARP15Q460N3 678 aa12.47□□□□□ -0.41
SDC3-201ENST00000336798 TEX44Q53QW1 395 aa12.47□□□□□ -0.41
SDC3-201ENST00000336798 ZDHHC20Q5W0Z9 365 aa12.47□□□□□ -0.41
SDC3-201ENST00000336798 PPP2R2DQ66LE6 453 aa12.47□□□□□ -0.41
SDC3-201ENST00000336798 LRRC20Q8TCA0 184 aa12.47□□□□□ -0.41
SDC3-201ENST00000336798 GPR151Q8TDV0 419 aa12.47□□□□□ -0.41
SDC3-201ENST00000336798 ACMSDQ8TDX5 336 aa12.47□□□□□ -0.41
SDC3-201ENST00000336798 B3GNT4Q9C0J1 378 aa12.47□□□□□ -0.41
SDC3-201ENST00000336798 ADAM7Q9H2U9 754 aa12.47□□□□□ -0.41
SDC3-201ENST00000336798 TRPV5Q9NQA5 729 aa12.47□□□□□ -0.41
SDC3-201ENST00000336798 INTS10Q9NVR2 710 aaKnown RBP12.47□□□□□ -0.41
SDC3-201ENST00000336798 MOCS1Q9NZB8 636 aa12.47□□□□□ -0.41
SDC3-201ENST00000336798 ABI3Q9P2A4 366 aa12.47□□□□□ -0.41
SDC3-201ENST00000336798 SORCS3Q9UPU3 1222 aa12.47□□□□□ -0.41
SDC3-201ENST00000336798 FADS3Q9Y5Q0 445 aa12.47□□□□□ -0.41
SDC3-201ENST00000336798 CHST10O43529 356 aa12.46□□□□□ -0.41
SDC3-201ENST00000336798 PGAM2P15259 253 aa12.46□□□□□ -0.41
SDC3-201ENST00000336798 GRM3Q14832 879 aa12.46□□□□□ -0.41
SDC3-201ENST00000336798 ERICH5Q6P6B1 374 aa12.46□□□□□ -0.41
SDC3-201ENST00000336798 MSANTD1Q6ZTZ1 278 aa12.46□□□□□ -0.41
SDC3-201ENST00000336798 P4HA3Q7Z4N8 544 aa12.46□□□□□ -0.41
SDC3-201ENST00000336798 COX18Q8N8Q8 333 aa12.46□□□□□ -0.41
SDC3-201ENST00000336798 RASGEF1AQ8N9B8 481 aa12.46□□□□□ -0.41
SDC3-201ENST00000336798 PCDHB18PQ96TA0 734 aa12.46□□□□□ -0.41
SDC3-201ENST00000336798 RTKNQ9BST9 563 aa12.46□□□□□ -0.41
SDC3-201ENST00000336798 IFT27Q9BW83 186 aa12.46□□□□□ -0.41
SDC3-201ENST00000336798 RHOJQ9H4E5 214 aa12.46□□□□□ -0.41
SDC3-201ENST00000336798 ACSS3Q9H6R3 686 aa12.46□□□□□ -0.41
SDC3-201ENST00000336798 TBC1D14Q9P2M4 693 aa12.46□□□□□ -0.41
SDC3-201ENST00000336798 MADDQ8WXG6 1647 aa12.46□□□□□ -0.41
SDC3-201ENST00000336798 FGF19O95750 216 aa12.46□□□□□ -0.41
SDC3-201ENST00000336798 CYB5AP00167 134 aa12.46□□□□□ -0.41
SDC3-201ENST00000336798 CST3P01034 146 aaPredicted RBP12.46□□□□□ -0.41
SDC3-201ENST00000336798 PRNPP04156 253 aa12.46□□□□□ -0.41
SDC3-201ENST00000336798 SDC2P34741 201 aa12.46□□□□□ -0.41
SDC3-201ENST00000336798 SLC6A9P48067 706 aa12.46□□□□□ -0.41
SDC3-201ENST00000336798 NFATC2Q13469 925 aa12.46□□□□□ -0.41
SDC3-201ENST00000336798 IDNKQ5T6J7 187 aa12.46□□□□□ -0.41
SDC3-201ENST00000336798 DNAJC19Q96DA6 116 aa12.46□□□□□ -0.41
SDC3-201ENST00000336798 ERCC6L2Q5T890 1561 aa12.46□□□□□ -0.41
SDC3-201ENST00000336798 ELOVL7A1L3X0 281 aa12.46□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms