RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 AFAP1Q8N556 730 aa3.21□□□□□ -1.9
HMGB1-201ENST00000326004 WDR20Q8TBZ3 569 aa3.21□□□□□ -1.9
HMGB1-201ENST00000326004 PTERQ96BW5 349 aa3.21□□□□□ -1.9
HMGB1-201ENST00000326004 ERLEC1Q96DZ1 483 aa3.21□□□□□ -1.9
HMGB1-201ENST00000326004 LINGO1Q96FE5 620 aa3.21□□□□□ -1.9
HMGB1-201ENST00000326004 CTAGE1Q96RT6 745 aa3.21□□□□□ -1.9
HMGB1-201ENST00000326004 ABHD1Q96SE0 405 aa3.21□□□□□ -1.9
HMGB1-201ENST00000326004 PKP4Q99569 1192 aa3.21□□□□□ -1.9
HMGB1-201ENST00000326004 KLHL4Q9C0H6 718 aa3.21□□□□□ -1.9
HMGB1-201ENST00000326004 ZNF556Q9HAH1 456 aa3.21□□□□□ -1.9
HMGB1-201ENST00000326004 LRRC4Q9HBW1 653 aa3.21□□□□□ -1.9
HMGB1-201ENST00000326004 HHATLQ9HCP6 504 aa3.21□□□□□ -1.9
HMGB1-201ENST00000326004 TAB2Q9NYJ8 693 aa3.21□□□□□ -1.9
HMGB1-201ENST00000326004 GDE1Q9NZC3 331 aa3.21□□□□□ -1.9
HMGB1-201ENST00000326004 IL17BQ9UHF5 180 aa3.21□□□□□ -1.9
HMGB1-201ENST00000326004 ANAPC2Q9UJX6 822 aa3.21□□□□□ -1.9
HMGB1-201ENST00000326004 NME7Q9Y5B8 376 aa3.21□□□□□ -1.9
HMGB1-201ENST00000326004 ZNF608Q9ULD9 1512 aaPredicted RBP3.2□□□□□ -1.9
HMGB1-201ENST00000326004 TOP2BQ02880 1626 aa3.2□□□□□ -1.9
HMGB1-201ENST00000326004 TO15178 435 aa3.2□□□□□ -1.9
HMGB1-201ENST00000326004 BUB3O43684 328 aa3.2□□□□□ -1.9
HMGB1-201ENST00000326004 ZWINTO95229 277 aa3.2□□□□□ -1.9
HMGB1-201ENST00000326004 BCL10O95999 233 aa3.2□□□□□ -1.9
HMGB1-201ENST00000326004 IGHV4-39P01824 125 aa3.2□□□□□ -1.9
HMGB1-201ENST00000326004 TFAP2AP05549 437 aa3.2□□□□□ -1.9
HMGB1-201ENST00000326004 F7P08709 466 aaPredicted RBP3.2□□□□□ -1.9
HMGB1-201ENST00000326004 AMD1P17707 334 aa3.2□□□□□ -1.9
HMGB1-201ENST00000326004 CAPZA2P47755 286 aa3.2□□□□□ -1.9
HMGB1-201ENST00000326004 FMO5P49326 533 aa3.2□□□□□ -1.9
HMGB1-201ENST00000326004 RPL24P83731 157 aaKnown RBP3.2□□□□□ -1.9
HMGB1-201ENST00000326004 CDK3Q00526 305 aa3.2□□□□□ -1.9
HMGB1-201ENST00000326004 ZRSR1Q15695 479 aaKnown RBP3.2□□□□□ -1.9
HMGB1-201ENST00000326004 SNAPC1Q16533 368 aa3.2□□□□□ -1.9
HMGB1-201ENST00000326004 ZNF672Q499Z4 452 aaPredicted RBP3.2□□□□□ -1.9
HMGB1-201ENST00000326004 CBWD6Q4V339 395 aa3.2□□□□□ -1.9
HMGB1-201ENST00000326004 CBWD3Q5JTY5 395 aa3.2□□□□□ -1.9
HMGB1-201ENST00000326004 ERMARDQ5T6L9 678 aa3.2□□□□□ -1.9
HMGB1-201ENST00000326004 ALS2CLQ60I27 953 aa3.2□□□□□ -1.9
HMGB1-201ENST00000326004 PLXDC2Q6UX71 529 aa3.2□□□□□ -1.9
HMGB1-201ENST00000326004 KCTD8Q6ZWB6 473 aa3.2□□□□□ -1.9
HMGB1-201ENST00000326004 DSG4Q86SJ6 1040 aa3.2□□□□□ -1.9
HMGB1-201ENST00000326004 ADIPOR2Q86V24 386 aa3.2□□□□□ -1.9
HMGB1-201ENST00000326004 FBXO39Q8N4B4 442 aa3.2□□□□□ -1.9
HMGB1-201ENST00000326004 MAB21L3Q8N8X9 362 aa3.2□□□□□ -1.9
HMGB1-201ENST00000326004 MOSPD2Q8NHP6 518 aa3.2□□□□□ -1.9
HMGB1-201ENST00000326004 SPATA20Q8TB22 786 aa3.2□□□□□ -1.9
HMGB1-201ENST00000326004 TAS1R2Q8TE23 839 aa3.2□□□□□ -1.9
HMGB1-201ENST00000326004 CD101Q93033 1021 aa3.2□□□□□ -1.9
HMGB1-201ENST00000326004 MTERF3Q96E29 417 aa3.2□□□□□ -1.9
HMGB1-201ENST00000326004 SCRN2Q96FV2 425 aa3.2□□□□□ -1.9
HMGB1-201ENST00000326004 OXNAD1Q96HP4 312 aaPredicted RBP3.2□□□□□ -1.9
HMGB1-201ENST00000326004 FAM81BQ96LP2 452 aa3.2□□□□□ -1.9
HMGB1-201ENST00000326004 OR6C1Q96RD1 312 aa3.2□□□□□ -1.9
HMGB1-201ENST00000326004 CENPOQ9BU64 300 aa3.2□□□□□ -1.9
HMGB1-201ENST00000326004 POLR3CQ9BUI4 534 aaPredicted RBP3.2□□□□□ -1.9
HMGB1-201ENST00000326004 CCDC106Q9BWC9 280 aa3.2□□□□□ -1.9
HMGB1-201ENST00000326004 CRNNQ9UBG3 495 aaPredicted RBP3.2□□□□□ -1.9
HMGB1-201ENST00000326004 DDX25Q9UHL0 483 aaKnown RBP3.2□□□□□ -1.9
HMGB1-201ENST00000326004 ZNF580Q9UK33 172 aa3.2□□□□□ -1.9
HMGB1-201ENST00000326004 GRIP1Q9Y3R0 1128 aa3.2□□□□□ -1.9
HMGB1-201ENST00000326004 TRPV2Q9Y5S1 764 aa3.2□□□□□ -1.9
HMGB1-201ENST00000326004 NOTCH4Q99466 2003 aa3.2□□□□□ -1.9
HMGB1-201ENST00000326004 ATAD2BQ9ULI0 1458 aa3.2□□□□□ -1.9
HMGB1-201ENST00000326004 IGLV5-45A0A087WSX0 123 aa3.19□□□□□ -1.9
HMGB1-201ENST00000326004 ELOVL7A1L3X0 281 aa3.19□□□□□ -1.9
HMGB1-201ENST00000326004 C16orf97H3BN30 126 aa3.19□□□□□ -1.9
HMGB1-201ENST00000326004 IKBKBO14920 756 aa3.19□□□□□ -1.9
HMGB1-201ENST00000326004 ZNF500O60304 480 aaPredicted RBP3.19□□□□□ -1.9
HMGB1-201ENST00000326004 TSPAN1O60635 241 aa3.19□□□□□ -1.9
HMGB1-201ENST00000326004 MED24O75448 989 aa3.19□□□□□ -1.9
HMGB1-201ENST00000326004 DNTTP04053 509 aa3.19□□□□□ -1.9
HMGB1-201ENST00000326004 LIPFP07098 398 aa3.19□□□□□ -1.9
HMGB1-201ENST00000326004 H1F0P07305 194 aaKnown RBP3.19□□□□□ -1.9
HMGB1-201ENST00000326004 CETPP11597 493 aa3.19□□□□□ -1.9
HMGB1-201ENST00000326004 MMP15P51511 669 aa3.19□□□□□ -1.9
HMGB1-201ENST00000326004 AIMP1Q12904 312 aaKnown RBP3.19□□□□□ -1.9
HMGB1-201ENST00000326004 PLA2G7Q13093 441 aa3.19□□□□□ -1.9
HMGB1-201ENST00000326004 SNTB1Q13884 538 aaKnown RBP3.19□□□□□ -1.9
HMGB1-201ENST00000326004 RASA2Q15283 850 aa3.19□□□□□ -1.9
HMGB1-201ENST00000326004 DUOXA1Q1HG43 343 aa3.19□□□□□ -1.9
HMGB1-201ENST00000326004 SIRPB2Q5JXA9 342 aa3.19□□□□□ -1.9
HMGB1-201ENST00000326004 CCNYL2Q5T2Q4 361 aa3.19□□□□□ -1.9
HMGB1-201ENST00000326004 STXBP5Q5T5C0 1151 aa3.19□□□□□ -1.9
HMGB1-201ENST00000326004 NDUFAF5Q5TEU4 345 aa3.19□□□□□ -1.9
HMGB1-201ENST00000326004 RUSC1-AS1Q66K80 236 aa3.19□□□□□ -1.9
HMGB1-201ENST00000326004 TMEM211Q6ICI0 200 aa3.19□□□□□ -1.9
HMGB1-201ENST00000326004 KLC3Q6P597 504 aa3.19□□□□□ -1.9
HMGB1-201ENST00000326004 C18orf65Q6ZTR6 163 aa3.19□□□□□ -1.9
HMGB1-201ENST00000326004 C9orf139Q6ZV77 190 aa3.19□□□□□ -1.9
HMGB1-201ENST00000326004 SLC9B2Q86UD5 537 aa3.19□□□□□ -1.9
HMGB1-201ENST00000326004 NFE4Q86UQ8 179 aa3.19□□□□□ -1.9
HMGB1-201ENST00000326004 PTOV1Q86YD1 416 aa3.19□□□□□ -1.9
HMGB1-201ENST00000326004 KCTD6Q8NC69 237 aa3.19□□□□□ -1.9
HMGB1-201ENST00000326004 PPFIBP2Q8ND30 876 aa3.19□□□□□ -1.9
HMGB1-201ENST00000326004 EXD1Q8NHP7 514 aa3.19□□□□□ -1.9
HMGB1-201ENST00000326004 SEMA4DQ92854 862 aa3.19□□□□□ -1.9
HMGB1-201ENST00000326004 SPACA9Q96E40 222 aaPredicted RBP3.19□□□□□ -1.9
HMGB1-201ENST00000326004 ARSGQ96EG1 525 aa3.19□□□□□ -1.9
HMGB1-201ENST00000326004 PRMT6Q96LA8 375 aaPredicted RBP3.19□□□□□ -1.9
HMGB1-201ENST00000326004 ZNF582Q96NG8 517 aaPredicted RBP3.19□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 55.4 ms