RNA–Protein interactions for RNA: ENST00000315249.11

RFFL-201, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

APPRIS P1 TSL 2 BASIC

Gene RFFL, Length 7,293 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-201ENST00000315249 ATXN2Q99700 1313 aaKnown RBP13.31□□□□□ -0.28
RFFL-201ENST00000315249 SUV39H1O43463 412 aa13.31□□□□□ -0.28
RFFL-201ENST00000315249 NIPSNAP2O75323 286 aa13.31□□□□□ -0.28
RFFL-201ENST00000315249 DLDP09622 509 aaKnown RBP13.31□□□□□ -0.28
RFFL-201ENST00000315249 KIR3DL1P43629 444 aa13.31□□□□□ -0.28
RFFL-201ENST00000315249 CEP78Q5JTW2 689 aa13.31□□□□□ -0.28
RFFL-201ENST00000315249 COLEC12Q5KU26 742 aa13.31□□□□□ -0.28
RFFL-201ENST00000315249 FAM91A1Q658Y4 838 aa13.31□□□□□ -0.28
RFFL-201ENST00000315249 TTYH3Q9C0H2 523 aa13.31□□□□□ -0.28
RFFL-201ENST00000315249 NID2Q14112 1375 aa13.31□□□□□ -0.28
RFFL-201ENST00000315249 XKRYO14609 159 aa13.31□□□□□ -0.28
RFFL-201ENST00000315249 HNRNPA1P09651 372 aaKnown RBP eCLIP13.31□□□□□ -0.28
RFFL-201ENST00000315249 COX4I1P13073 169 aa13.31□□□□□ -0.28
RFFL-201ENST00000315249 MLLT1Q03111 559 aaPredicted RBP13.31□□□□□ -0.28
RFFL-201ENST00000315249 CLCQ05315 142 aa13.31□□□□□ -0.28
RFFL-201ENST00000315249 CST9Q5W186 159 aa13.31□□□□□ -0.28
RFFL-201ENST00000315249 P4HA3Q7Z4N8 544 aa13.31□□□□□ -0.28
RFFL-201ENST00000315249 TMEM110Q86TL2 294 aa13.31□□□□□ -0.28
RFFL-201ENST00000315249 EXOC3L1Q86VI1 746 aa13.31□□□□□ -0.28
RFFL-201ENST00000315249 TMEM126BQ8IUX1 230 aa13.31□□□□□ -0.28
RFFL-201ENST00000315249 SETD9Q8NE22 299 aa13.31□□□□□ -0.28
RFFL-201ENST00000315249 RMND5BQ96G75 393 aaPredicted RBP13.31□□□□□ -0.28
RFFL-201ENST00000315249 NECTIN3Q9NQS3 549 aa13.31□□□□□ -0.28
RFFL-201ENST00000315249 PLCH1Q4KWH8 1693 aa13.31□□□□□ -0.28
RFFL-201ENST00000315249 A0A0J9YYE9 177 aa13.31□□□□□ -0.28
RFFL-201ENST00000315249 ADSLP30566 484 aaPredicted RBP13.31□□□□□ -0.28
RFFL-201ENST00000315249 TRIM71Q2Q1W2 868 aaKnown RBP13.31□□□□□ -0.28
RFFL-201ENST00000315249 PLEKHG6Q3KR16 790 aa13.31□□□□□ -0.28
RFFL-201ENST00000315249 ARHGAP36Q6ZRI8 547 aa13.31□□□□□ -0.28
RFFL-201ENST00000315249 ANKRD46Q86W74 232 aa13.31□□□□□ -0.28
RFFL-201ENST00000315249 C19orf18Q8NEA5 215 aa13.31□□□□□ -0.28
RFFL-201ENST00000315249 CKAP2Q8WWK9 683 aa13.31□□□□□ -0.28
RFFL-201ENST00000315249 PPM1MQ96MI6 270 aa13.31□□□□□ -0.28
RFFL-201ENST00000315249 ELAC1Q9H777 363 aaKnown RBP13.31□□□□□ -0.28
RFFL-201ENST00000315249 TOPAZ1Q8N9V7 1692 aa13.3□□□□□ -0.28
RFFL-201ENST00000315249 IQCMA0A1B0GVH7 501 aa13.3□□□□□ -0.28
RFFL-201ENST00000315249 CST1P01037 141 aa13.3□□□□□ -0.28
RFFL-201ENST00000315249 TGFB1P01137 390 aa13.3□□□□□ -0.28
RFFL-201ENST00000315249 NTHL1P78549 312 aa13.3□□□□□ -0.28
RFFL-201ENST00000315249 SPDYCQ5MJ68 293 aa13.3□□□□□ -0.28
RFFL-201ENST00000315249 IL22RA1Q8N6P7 574 aa13.3□□□□□ -0.28
RFFL-201ENST00000315249 MAPK15Q8TD08 544 aa13.3□□□□□ -0.28
RFFL-201ENST00000315249 SLC35F5Q8WV83 523 aa13.3□□□□□ -0.28
RFFL-201ENST00000315249 ADAMTS10Q9H324 1103 aa13.3□□□□□ -0.28
RFFL-201ENST00000315249 TMEM27Q9HBJ8 222 aa13.3□□□□□ -0.28
RFFL-201ENST00000315249 NEK6Q9HC98 313 aa13.3□□□□□ -0.28
RFFL-201ENST00000315249 DMTF1Q9Y222 760 aa13.3□□□□□ -0.28
RFFL-201ENST00000315249 NEDD8Q15843 81 aa13.3□□□□□ -0.28
RFFL-201ENST00000315249 SLC9B2Q86UD5 537 aa13.3□□□□□ -0.28
RFFL-201ENST00000315249 CENPIQ92674 756 aaPredicted RBP13.3□□□□□ -0.28
RFFL-201ENST00000315249 DGAT2Q96PD7 388 aa13.3□□□□□ -0.28
RFFL-201ENST00000315249 ZNF624Q9P2J8 865 aaPredicted RBP13.3□□□□□ -0.28
RFFL-201ENST00000315249 MYO18AQ92614 2054 aaKnown RBP13.3□□□□□ -0.28
RFFL-201ENST00000315249 CDK5RAP2Q96SN8 1893 aa13.3□□□□□ -0.28
RFFL-201ENST00000315249 C2orf78A6NCI8 922 aa13.3□□□□□ -0.28
RFFL-201ENST00000315249 BIRC5O15392 142 aa13.3□□□□□ -0.28
RFFL-201ENST00000315249 UGT2B17O75795 530 aa13.3□□□□□ -0.28
RFFL-201ENST00000315249 ATP1B2P14415 290 aaPredicted RBP13.3□□□□□ -0.28
RFFL-201ENST00000315249 STK19P49842 368 aaPredicted RBP13.3□□□□□ -0.28
RFFL-201ENST00000315249 IRF5Q13568 498 aa13.3□□□□□ -0.28
RFFL-201ENST00000315249 IL23RQ5VWK5 629 aa13.3□□□□□ -0.28
RFFL-201ENST00000315249 SLC8B1Q6J4K2 584 aa13.3□□□□□ -0.28
RFFL-201ENST00000315249 FSTL4Q6MZW2 842 aa13.3□□□□□ -0.28
RFFL-201ENST00000315249 NTAN1Q96AB6 310 aa13.3□□□□□ -0.28
RFFL-201ENST00000315249 KIAA1143Q96AT1 154 aaPredicted RBP13.3□□□□□ -0.28
RFFL-201ENST00000315249 NPAS2Q99743 824 aa13.3□□□□□ -0.28
RFFL-201ENST00000315249 EVPLQ92817 2033 aa13.3□□□□□ -0.28
RFFL-201ENST00000315249 C5P01031 1676 aa13.3□□□□□ -0.28
RFFL-201ENST00000315249 TRAPPC6AO75865 159 aa13.3□□□□□ -0.28
RFFL-201ENST00000315249 NDUFS1P28331 727 aa13.3□□□□□ -0.28
RFFL-201ENST00000315249 SLC1A5Q15758 541 aa13.3□□□□□ -0.28
RFFL-201ENST00000315249 COX18Q8N8Q8 333 aa13.3□□□□□ -0.28
RFFL-201ENST00000315249 SLC44A1Q8WWI5 657 aa13.3□□□□□ -0.28
RFFL-201ENST00000315249 ZNF599Q96NL3 588 aa13.3□□□□□ -0.28
RFFL-201ENST00000315249 CCM2Q9BSQ5 444 aa13.3□□□□□ -0.28
RFFL-201ENST00000315249 ANKRD66B4E2M5 251 aa13.3□□□□□ -0.28
RFFL-201ENST00000315249 PSME3P61289 254 aa13.3□□□□□ -0.28
RFFL-201ENST00000315249 DDI2Q5TDH0 399 aa13.3□□□□□ -0.28
RFFL-201ENST00000315249 ALYREFQ86V81 257 aaKnown RBP13.3□□□□□ -0.28
RFFL-201ENST00000315249 CLN6Q9NWW5 311 aa13.3□□□□□ -0.28
RFFL-201ENST00000315249 SERTAD3Q9UJW9 196 aa13.3□□□□□ -0.28
RFFL-201ENST00000315249 PIAS3Q9Y6X2 628 aa13.3□□□□□ -0.28
RFFL-201ENST00000315249 RPS21P63220 83 aaKnown RBP13.3□□□□□ -0.28
RFFL-201ENST00000315249 DEFB103AP81534 67 aa13.3□□□□□ -0.28
RFFL-201ENST00000315249 ZBTB6Q15916 424 aa13.3□□□□□ -0.28
RFFL-201ENST00000315249 INTS10Q9NVR2 710 aaKnown RBP13.3□□□□□ -0.28
RFFL-201ENST00000315249 AJAP1Q9UKB5 411 aaPredicted RBP13.3□□□□□ -0.28
RFFL-201ENST00000315249 COQ4Q9Y3A0 265 aa13.3□□□□□ -0.28
RFFL-201ENST00000315249 TPRKBQ9Y3C4 175 aa13.3□□□□□ -0.28
RFFL-201ENST00000315249 RBM7Q9Y580 266 aaKnown RBP13.3□□□□□ -0.28
RFFL-201ENST00000315249 AP4S1Q9Y587 144 aa13.3□□□□□ -0.28
RFFL-201ENST00000315249 KDELR3O43731 214 aa13.29□□□□□ -0.28
RFFL-201ENST00000315249 OR4F21O95013 312 aa13.29□□□□□ -0.28
RFFL-201ENST00000315249 SLC1A2P43004 574 aa13.29□□□□□ -0.28
RFFL-201ENST00000315249 NRG3P56975 720 aa13.29□□□□□ -0.28
RFFL-201ENST00000315249 KHDRBS1Q07666 443 aaKnown RBP eCLIP13.29□□□□□ -0.28
RFFL-201ENST00000315249 SPESP1Q6UW49 350 aa13.29□□□□□ -0.28
RFFL-201ENST00000315249 ISLR2Q6UXK2 745 aa13.29□□□□□ -0.28
RFFL-201ENST00000315249 SPATA19Q7Z5L4 167 aa13.29□□□□□ -0.28
RFFL-201ENST00000315249 LIX1Q8N485 282 aa13.29□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms