RNA–Protein interactions for RNA: ENST00000302528.11

CLIP1-201, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS P4 TSL 5 BASIC

Gene CLIP1, Length 5,833 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-201ENST00000302528 RPH3AQ9Y2J0 694 aaPredicted RBP10.27□□□□□ -0.77
CLIP1-201ENST00000302528 PCDHB1Q9Y5F3 818 aa10.27□□□□□ -0.77
CLIP1-201ENST00000302528 LRRC72A6NJI9 287 aa10.26□□□□□ -0.77
CLIP1-201ENST00000302528 ELOA3DA6NLF2 546 aaPredicted RBP10.26□□□□□ -0.77
CLIP1-201ENST00000302528 IQCF5A8MTL0 148 aa10.26□□□□□ -0.77
CLIP1-201ENST00000302528 EPHB6O15197 1021 aa10.26□□□□□ -0.77
CLIP1-201ENST00000302528 CLDN9O95484 217 aa10.26□□□□□ -0.77
CLIP1-201ENST00000302528 HSD17B2P37059 387 aa10.26□□□□□ -0.77
CLIP1-201ENST00000302528 SLC13A2Q13183 592 aa10.26□□□□□ -0.77
CLIP1-201ENST00000302528 RAB39AQ14964 217 aa10.26□□□□□ -0.77
CLIP1-201ENST00000302528 ELOA3BQ3SY89 546 aa10.26□□□□□ -0.77
CLIP1-201ENST00000302528 SDHAF4Q5VUM1 108 aa10.26□□□□□ -0.77
CLIP1-201ENST00000302528 GTF2IRD2BQ6EKJ0 949 aa10.26□□□□□ -0.77
CLIP1-201ENST00000302528 MED27Q6P2C8 311 aa10.26□□□□□ -0.77
CLIP1-201ENST00000302528 ARSKQ6UWY0 536 aa10.26□□□□□ -0.77
CLIP1-201ENST00000302528 SSX6Q7RTT6 188 aa10.26□□□□□ -0.77
CLIP1-201ENST00000302528 GTF2IRD2Q86UP8 949 aa10.26□□□□□ -0.77
CLIP1-201ENST00000302528 COX18Q8N8Q8 333 aa10.26□□□□□ -0.77
CLIP1-201ENST00000302528 TSEN2Q8NCE0 465 aaKnown RBP10.26□□□□□ -0.77
CLIP1-201ENST00000302528 KIAA0895Q8NCT3 520 aa10.26□□□□□ -0.77
CLIP1-201ENST00000302528 ELOA3Q8NG57 546 aa10.26□□□□□ -0.77
CLIP1-201ENST00000302528 PIWIL1Q96J94 861 aaKnown RBP10.26□□□□□ -0.77
CLIP1-201ENST00000302528 FEM1CQ96JP0 617 aa10.26□□□□□ -0.77
CLIP1-201ENST00000302528 TUBGCP5Q96RT8 1024 aa10.26□□□□□ -0.77
CLIP1-201ENST00000302528 LGMNQ99538 433 aa10.26□□□□□ -0.77
CLIP1-201ENST00000302528 LPIN3Q9BQK8 851 aa10.26□□□□□ -0.77
CLIP1-201ENST00000302528 MUC13Q9H3R2 512 aa10.26□□□□□ -0.77
CLIP1-201ENST00000302528 CLTCQ00610 1675 aaKnown RBP10.26□□□□□ -0.77
CLIP1-201ENST00000302528 EME2A4GXA9 379 aaPredicted RBP10.26□□□□□ -0.77
CLIP1-201ENST00000302528 TMEM150BA6NC51 233 aa10.26□□□□□ -0.77
CLIP1-201ENST00000302528 GPR89AB7ZAQ6 455 aa10.26□□□□□ -0.77
CLIP1-201ENST00000302528 TLR5O60602 858 aa10.26□□□□□ -0.77
CLIP1-201ENST00000302528 GPR89BP0CG08 455 aa10.26□□□□□ -0.77
CLIP1-201ENST00000302528 ZNF16P17020 682 aaPredicted RBP10.26□□□□□ -0.77
CLIP1-201ENST00000302528 HSD11B1P28845 292 aa10.26□□□□□ -0.77
CLIP1-201ENST00000302528 CASRP41180 1078 aa10.26□□□□□ -0.77
CLIP1-201ENST00000302528 AVPR1BP47901 424 aa10.26□□□□□ -0.77
CLIP1-201ENST00000302528 PGDP52209 483 aa10.26□□□□□ -0.77
CLIP1-201ENST00000302528 ILF3Q12906 894 aaKnown RBP eCLIP10.26□□□□□ -0.77
CLIP1-201ENST00000302528 TMEM161BQ8NDZ6 487 aa10.26□□□□□ -0.77
CLIP1-201ENST00000302528 STOML3Q8TAV4 291 aa10.26□□□□□ -0.77
CLIP1-201ENST00000302528 SLC35C1Q96A29 364 aa10.26□□□□□ -0.77
CLIP1-201ENST00000302528 SLC7A6OSQ96CW6 309 aaPredicted RBP10.26□□□□□ -0.77
CLIP1-201ENST00000302528 KAZALD1Q96I82 304 aa10.26□□□□□ -0.77
CLIP1-201ENST00000302528 PTPN18Q99952 460 aa10.26□□□□□ -0.77
CLIP1-201ENST00000302528 GPATCH1Q9BRR8 931 aaKnown RBP10.26□□□□□ -0.77
CLIP1-201ENST00000302528 MECRQ9BV79 373 aa10.26□□□□□ -0.77
CLIP1-201ENST00000302528 ZNF69Q9UC07 566 aa10.26□□□□□ -0.77
CLIP1-201ENST00000302528 RIMKLBQ9ULI2 386 aa10.26□□□□□ -0.77
CLIP1-201ENST00000302528 TESMINQ9Y4I5 508 aa10.26□□□□□ -0.77
CLIP1-201ENST00000302528 PRR5-ARHGAP8B1AHC4 643 aa10.26□□□□□ -0.77
CLIP1-201ENST00000302528 TRAFD1O14545 582 aaPredicted RBP10.26□□□□□ -0.77
CLIP1-201ENST00000302528 OR1F1O43749 312 aa10.26□□□□□ -0.77
CLIP1-201ENST00000302528 NARSO43776 548 aaKnown RBP10.26□□□□□ -0.77
CLIP1-201ENST00000302528 IFNA7P01567 189 aa10.26□□□□□ -0.77
CLIP1-201ENST00000302528 ITGAVP06756 1048 aa10.26□□□□□ -0.77
CLIP1-201ENST00000302528 STOMP27105 288 aa10.26□□□□□ -0.77
CLIP1-201ENST00000302528 GABRR2P28476 465 aa10.26□□□□□ -0.77
CLIP1-201ENST00000302528 ARHGAP8P85298 464 aa10.26□□□□□ -0.77
CLIP1-201ENST00000302528 LRRC38Q5VT99 294 aa10.26□□□□□ -0.77
CLIP1-201ENST00000302528 MAP4K3Q8IVH8 894 aa10.26□□□□□ -0.77
CLIP1-201ENST00000302528 ZNF101Q8IZC7 436 aa10.26□□□□□ -0.77
CLIP1-201ENST00000302528 NODALQ96S42 347 aa10.26□□□□□ -0.77
CLIP1-201ENST00000302528 DPEP2Q9H4A9 486 aa10.26□□□□□ -0.77
CLIP1-201ENST00000302528 FAM105AQ9NUU6 356 aa10.26□□□□□ -0.77
CLIP1-201ENST00000302528 LYARQ9NX58 379 aaKnown RBP10.26□□□□□ -0.77
CLIP1-201ENST00000302528 MIOSQ9NXC5 875 aa10.26□□□□□ -0.77
CLIP1-201ENST00000302528 TEX13CA0A0J9YWL9 993 aa10.26□□□□□ -0.77
CLIP1-201ENST00000302528 ITGA10O75578 1167 aa10.26□□□□□ -0.77
CLIP1-201ENST00000302528 CLEC3AO75596 197 aa10.26□□□□□ -0.77
CLIP1-201ENST00000302528 STK16O75716 305 aa10.26□□□□□ -0.77
CLIP1-201ENST00000302528 NOL4O94818 638 aa10.26□□□□□ -0.77
CLIP1-201ENST00000302528 LGALS2P05162 132 aa10.26□□□□□ -0.77
CLIP1-201ENST00000302528 RPLP0P05388 317 aaKnown RBP10.26□□□□□ -0.77
CLIP1-201ENST00000302528 IL7RP16871 459 aa10.26□□□□□ -0.77
CLIP1-201ENST00000302528 GLRA2P23416 452 aa10.26□□□□□ -0.77
CLIP1-201ENST00000302528 ACSL1P33121 698 aa10.26□□□□□ -0.77
CLIP1-201ENST00000302528 CCL23P55773 120 aa10.26□□□□□ -0.77
CLIP1-201ENST00000302528 CBLBQ13191 982 aa10.26□□□□□ -0.77
CLIP1-201ENST00000302528 ANKS1BQ7Z6G8 1248 aa10.26□□□□□ -0.77
CLIP1-201ENST00000302528 RIOX2Q8IUF8 465 aa10.26□□□□□ -0.77
CLIP1-201ENST00000302528 OR14C36Q8NHC7 312 aa10.26□□□□□ -0.77
CLIP1-201ENST00000302528 LRRN4Q8WUT4 740 aa10.26□□□□□ -0.77
CLIP1-201ENST00000302528 MAFIPQ8WZ33 124 aa10.26□□□□□ -0.77
CLIP1-201ENST00000302528 MFSD3Q96ES6 412 aa10.26□□□□□ -0.77
CLIP1-201ENST00000302528 XRN2Q9H0D6 950 aaKnown RBP eCLIP10.26□□□□□ -0.77
CLIP1-201ENST00000302528 PRDM4Q9UKN5 801 aa10.26□□□□□ -0.77
CLIP1-201ENST00000302528 PLEKHA6Q9Y2H5 1048 aa10.26□□□□□ -0.77
CLIP1-201ENST00000302528 ANKRD63C9JTQ0 380 aa10.25□□□□□ -0.77
CLIP1-201ENST00000302528 CPNE3O75131 537 aaKnown RBP10.25□□□□□ -0.77
CLIP1-201ENST00000302528 SLITRK3O94933 977 aa10.25□□□□□ -0.77
CLIP1-201ENST00000302528 WASP42768 502 aa10.25□□□□□ -0.77
CLIP1-201ENST00000302528 GBX2P52951 348 aaPredicted RBP10.25□□□□□ -0.77
CLIP1-201ENST00000302528 MLLT6P55198 1093 aaPredicted RBP10.25□□□□□ -0.77
CLIP1-201ENST00000302528 ARPC4P59998 168 aa10.25□□□□□ -0.77
CLIP1-201ENST00000302528 KLHL22Q53GT1 634 aa10.25□□□□□ -0.77
CLIP1-201ENST00000302528 C6orf52Q5T4I8 152 aa10.25□□□□□ -0.77
CLIP1-201ENST00000302528 CMC1Q7Z7K0 106 aa10.25□□□□□ -0.77
CLIP1-201ENST00000302528 MAB21L3Q8N8X9 362 aa10.25□□□□□ -0.77
CLIP1-201ENST00000302528 POC1BQ8TC44 478 aa10.25□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms