RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 LRRC70Q7Z2Q7 622 aa9.76□□□□□ -0.85
COL6A3-201ENST00000295550 SPG21Q9NZD8 308 aa9.76□□□□□ -0.85
COL6A3-201ENST00000295550 NPEPPSL1A6NEC2 478 aa9.75□□□□□ -0.85
COL6A3-201ENST00000295550 H3BNH8 94 aa9.75□□□□□ -0.85
COL6A3-201ENST00000295550 CABYRO75952 493 aa9.75□□□□□ -0.85
COL6A3-201ENST00000295550 VNN1O95497 513 aa9.75□□□□□ -0.85
COL6A3-201ENST00000295550 GPR65Q8IYL9 337 aa9.75□□□□□ -0.85
COL6A3-201ENST00000295550 PGAM4Q8N0Y7 254 aa9.75□□□□□ -0.85
COL6A3-201ENST00000295550 OR10H4Q8NGA5 316 aa9.75□□□□□ -0.85
COL6A3-201ENST00000295550 ZSCAN5AQ9BUG6 496 aa9.75□□□□□ -0.85
COL6A3-201ENST00000295550 SEC14L3Q9UDX4 400 aa9.75□□□□□ -0.85
COL6A3-201ENST00000295550 EFCAB9A8MZ26 197 aa9.75□□□□□ -0.85
COL6A3-201ENST00000295550 RPLP0P05388 317 aaKnown RBP9.75□□□□□ -0.85
COL6A3-201ENST00000295550 RGS19P49795 217 aa9.75□□□□□ -0.85
COL6A3-201ENST00000295550 GDF10P55107 478 aa9.75□□□□□ -0.85
COL6A3-201ENST00000295550 FAM76BQ5HYJ3 339 aa9.75□□□□□ -0.85
COL6A3-201ENST00000295550 FAM91A1Q658Y4 838 aa9.75□□□□□ -0.85
COL6A3-201ENST00000295550 PCSK9Q8NBP7 692 aaKnown RBP9.75□□□□□ -0.85
COL6A3-201ENST00000295550 NODALQ96S42 347 aa9.75□□□□□ -0.85
COL6A3-201ENST00000295550 GPR20Q99678 358 aa9.75□□□□□ -0.85
COL6A3-201ENST00000295550 TCF25Q9BQ70 676 aa9.75□□□□□ -0.85
COL6A3-201ENST00000295550 IRF2BPLQ9H1B7 796 aa9.75□□□□□ -0.85
COL6A3-201ENST00000295550 FBXO10Q9UK96 956 aa9.75□□□□□ -0.85
COL6A3-201ENST00000295550 I3L521 148 aa9.75□□□□□ -0.85
COL6A3-201ENST00000295550 KLF11O14901 512 aa9.75□□□□□ -0.85
COL6A3-201ENST00000295550 FABP3P05413 133 aa9.75□□□□□ -0.85
COL6A3-201ENST00000295550 ACTR3P61158 418 aa9.75□□□□□ -0.85
COL6A3-201ENST00000295550 MRPS6P82932 125 aaKnown RBP9.75□□□□□ -0.85
COL6A3-201ENST00000295550 IDNKQ5T6J7 187 aa9.75□□□□□ -0.85
COL6A3-201ENST00000295550 PLCZ1Q86YW0 608 aa9.75□□□□□ -0.85
COL6A3-201ENST00000295550 SRFBP1Q8NEF9 429 aaKnown RBP9.75□□□□□ -0.85
COL6A3-201ENST00000295550 NKD1Q969G9 470 aa9.75□□□□□ -0.85
COL6A3-201ENST00000295550 EXO5Q9H790 373 aa9.75□□□□□ -0.85
COL6A3-201ENST00000295550 TBC1D17Q9HA65 648 aa9.75□□□□□ -0.85
COL6A3-201ENST00000295550 NDUFS2O75306 463 aa9.75□□□□□ -0.85
COL6A3-201ENST00000295550 SRSF11Q05519 484 aaKnown RBP9.75□□□□□ -0.85
COL6A3-201ENST00000295550 ZNF697Q5TEC3 545 aa9.75□□□□□ -0.85
COL6A3-201ENST00000295550 RAB12Q6IQ22 244 aa9.75□□□□□ -0.85
COL6A3-201ENST00000295550 PTF1AQ7RTS3 328 aa9.75□□□□□ -0.85
COL6A3-201ENST00000295550 UFD1Q92890 307 aa9.75□□□□□ -0.85
COL6A3-201ENST00000295550 TREM1Q9NP99 234 aa9.75□□□□□ -0.85
COL6A3-201ENST00000295550 WRAP73Q9P2S5 460 aaPredicted RBP9.75□□□□□ -0.85
COL6A3-201ENST00000295550 MFHAS1Q9Y4C4 1052 aa9.75□□□□□ -0.85
COL6A3-201ENST00000295550 KPNA3O00505 521 aaPredicted RBP9.75□□□□□ -0.85
COL6A3-201ENST00000295550 CELF2O95319 508 aaKnown RBP9.75□□□□□ -0.85
COL6A3-201ENST00000295550 ZNF157P51786 506 aaPredicted RBP9.75□□□□□ -0.85
COL6A3-201ENST00000295550 CDK18Q07002 472 aa9.75□□□□□ -0.85
COL6A3-201ENST00000295550 BCL2L1Q07817 233 aa9.75□□□□□ -0.85
COL6A3-201ENST00000295550 RFTN2Q52LD8 501 aaPredicted RBP9.75□□□□□ -0.85
COL6A3-201ENST00000295550 CUZD1Q86UP6 607 aa9.75□□□□□ -0.85
COL6A3-201ENST00000295550 RALGPS2Q86X27 583 aaPredicted RBP9.75□□□□□ -0.85
COL6A3-201ENST00000295550 TRIM43Q96BQ3 446 aaPredicted RBP9.75□□□□□ -0.85
COL6A3-201ENST00000295550 CRELD1Q96HD1 420 aa9.75□□□□□ -0.85
COL6A3-201ENST00000295550 CXorf21Q9HAI6 301 aa9.75□□□□□ -0.85
COL6A3-201ENST00000295550 DNAJB4Q9UDY4 337 aa9.75□□□□□ -0.85
COL6A3-201ENST00000295550 MALT1Q9UDY8 824 aa9.75□□□□□ -0.85
COL6A3-201ENST00000295550 GPN3Q9UHW5 284 aaPredicted RBP9.75□□□□□ -0.85
COL6A3-201ENST00000295550 TIMM13Q9Y5L4 95 aaPredicted RBP9.75□□□□□ -0.85
COL6A3-201ENST00000295550 NRAPQ86VF7 1730 aa9.75□□□□□ -0.85
COL6A3-201ENST00000295550 C6orf89Q6UWU4 347 aa9.75□□□□□ -0.85
COL6A3-201ENST00000295550 RTL4Q6ZR62 310 aa9.75□□□□□ -0.85
COL6A3-201ENST00000295550 SNX20Q7Z614 316 aa9.75□□□□□ -0.85
COL6A3-201ENST00000295550 CMC1Q7Z7K0 106 aa9.75□□□□□ -0.85
COL6A3-201ENST00000295550 PPCDCQ96CD2 204 aa9.75□□□□□ -0.85
COL6A3-201ENST00000295550 FGF1P05230 155 aa9.75□□□□□ -0.85
COL6A3-201ENST00000295550 BDNFP23560 247 aa9.75□□□□□ -0.85
COL6A3-201ENST00000295550 ADCYAP1R1P41586 468 aa9.75□□□□□ -0.85
COL6A3-201ENST00000295550 MANFP55145 182 aaKnown RBP9.75□□□□□ -0.85
COL6A3-201ENST00000295550 KCNJ11Q14654 390 aa9.75□□□□□ -0.85
COL6A3-201ENST00000295550 VMACQ2NL98 169 aa9.75□□□□□ -0.85
COL6A3-201ENST00000295550 USP30Q70CQ3 517 aa9.75□□□□□ -0.85
COL6A3-201ENST00000295550 SPPL2CQ8IUH8 684 aa9.75□□□□□ -0.85
COL6A3-201ENST00000295550 CNTD1Q8N815 330 aa9.75□□□□□ -0.85
COL6A3-201ENST00000295550 COL2A1P02458 1487 aaPredicted RBP9.75□□□□□ -0.85
COL6A3-201ENST00000295550 PPM1BO75688 479 aa9.75□□□□□ -0.85
COL6A3-201ENST00000295550 CAPN15O75808 1086 aa9.75□□□□□ -0.85
COL6A3-201ENST00000295550 SRCP12931 536 aa9.75□□□□□ -0.85
COL6A3-201ENST00000295550 EPHX2P34913 555 aa9.75□□□□□ -0.85
COL6A3-201ENST00000295550 PSEN1P49768 467 aa9.75□□□□□ -0.85
COL6A3-201ENST00000295550 ATP6V0D1P61421 351 aa9.75□□□□□ -0.85
COL6A3-201ENST00000295550 PPP3R1P63098 170 aa9.75□□□□□ -0.85
COL6A3-201ENST00000295550 KHDC1Q4VXA5 237 aaKnown RBP9.75□□□□□ -0.85
COL6A3-201ENST00000295550 HAGHLQ6PII5 290 aaPredicted RBP9.75□□□□□ -0.85
COL6A3-201ENST00000295550 LAPTM4BQ86VI4 370 aa9.75□□□□□ -0.85
COL6A3-201ENST00000295550 TFAP2BQ92481 460 aa9.75□□□□□ -0.85
COL6A3-201ENST00000295550 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP9.75□□□□□ -0.85
COL6A3-201ENST00000295550 CEP290O15078 2479 aa9.75□□□□□ -0.85
COL6A3-201ENST00000295550 A0A0J9YYE9 177 aa9.74□□□□□ -0.85
COL6A3-201ENST00000295550 FADS2P1A8MWK0 482 aa9.74□□□□□ -0.85
COL6A3-201ENST00000295550 DNAJA2O60884 412 aa9.74□□□□□ -0.85
COL6A3-201ENST00000295550 GNALP38405 381 aa9.74□□□□□ -0.85
COL6A3-201ENST00000295550 EEF1DP3Q658K8 133 aa9.74□□□□□ -0.85
COL6A3-201ENST00000295550 SVOPLQ8N434 492 aa9.74□□□□□ -0.85
COL6A3-201ENST00000295550 MAB21L3Q8N8X9 362 aa9.74□□□□□ -0.85
COL6A3-201ENST00000295550 ZNF570Q96NI8 536 aa9.74□□□□□ -0.85
COL6A3-201ENST00000295550 GULP1Q9UBP9 304 aa9.74□□□□□ -0.85
COL6A3-201ENST00000295550 ATG2BQ96BY7 2078 aa9.74□□□□□ -0.85
COL6A3-201ENST00000295550 MOXD2PA6NHM9 499 aa9.74□□□□□ -0.85
COL6A3-201ENST00000295550 LIMK2P53671 638 aa9.74□□□□□ -0.85
COL6A3-201ENST00000295550 OR52J3Q8NH60 311 aa9.74□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms