RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 DSC2Q02487 901 aa18.9■□□□□ 0.62
UPF1-201ENST00000262803 KHDC1Q4VXA5 237 aaKnown RBP18.9■□□□□ 0.62
UPF1-201ENST00000262803 FAM91A1Q658Y4 838 aa18.9■□□□□ 0.62
UPF1-201ENST00000262803 SMYD5Q6GMV2 418 aa18.9■□□□□ 0.62
UPF1-201ENST00000262803 CCDC36Q8IYA8 594 aa18.9■□□□□ 0.62
UPF1-201ENST00000262803 ZNF781Q8N8C0 355 aa18.9■□□□□ 0.62
UPF1-201ENST00000262803 RUVBL1Q9Y265 456 aaKnown RBP18.9■□□□□ 0.62
UPF1-201ENST00000262803 CLEC6AQ6EIG7 209 aa18.9■□□□□ 0.62
UPF1-201ENST00000262803 HAPLN3Q96S86 360 aa18.9■□□□□ 0.62
UPF1-201ENST00000262803 MIPEPQ99797 713 aa18.9■□□□□ 0.62
UPF1-201ENST00000262803 ELOVL7A1L3X0 281 aa18.9■□□□□ 0.62
UPF1-201ENST00000262803 ARL5CA6NH57 179 aa18.9■□□□□ 0.62
UPF1-201ENST00000262803 GPIP06744 558 aa18.9■□□□□ 0.62
UPF1-201ENST00000262803 NAE1Q13564 534 aa18.9■□□□□ 0.62
UPF1-201ENST00000262803 MCRS1Q96EZ8 462 aa18.9■□□□□ 0.62
UPF1-201ENST00000262803 GPR21Q99679 349 aa18.9■□□□□ 0.62
UPF1-201ENST00000262803 CHCHD6Q9BRQ6 235 aa18.9■□□□□ 0.62
UPF1-201ENST00000262803 ANKRD26Q9UPS8 1709 aa18.9■□□□□ 0.62
UPF1-201ENST00000262803 PFKMP08237 780 aa18.89■□□□□ 0.62
UPF1-201ENST00000262803 ELNP15502 786 aa18.89■□□□□ 0.62
UPF1-201ENST00000262803 SDC2P34741 201 aa18.89■□□□□ 0.62
UPF1-201ENST00000262803 GTF2H2Q13888 395 aa18.89■□□□□ 0.62
UPF1-201ENST00000262803 DCST1Q5T197 706 aa18.89■□□□□ 0.62
UPF1-201ENST00000262803 RNF220Q5VTB9 566 aa18.89■□□□□ 0.62
UPF1-201ENST00000262803 GTF2H2CQ6P1K8 395 aa18.89■□□□□ 0.62
UPF1-201ENST00000262803 PARP8Q8N3A8 854 aa18.89■□□□□ 0.62
UPF1-201ENST00000262803 BCAS3Q9H6U6 928 aa18.89■□□□□ 0.62
UPF1-201ENST00000262803 SLC35C2Q9NQQ7 365 aa18.89■□□□□ 0.62
UPF1-201ENST00000262803 UBAP1Q9NZ09 502 aa18.89■□□□□ 0.62
UPF1-201ENST00000262803 PEX10O60683 326 aa18.89■□□□□ 0.61
UPF1-201ENST00000262803 CTSKP43235 329 aa18.89■□□□□ 0.61
UPF1-201ENST00000262803 KLHL26Q53HC5 615 aa18.89■□□□□ 0.61
UPF1-201ENST00000262803 IPPKQ9H8X2 491 aa18.89■□□□□ 0.61
UPF1-201ENST00000262803 FETUBQ9UGM5 382 aa18.89■□□□□ 0.61
UPF1-201ENST00000262803 ZBTB11O95625 1053 aaPredicted RBP18.89■□□□□ 0.61
UPF1-201ENST00000262803 SNAP47Q5SQN1 464 aa18.89■□□□□ 0.61
UPF1-201ENST00000262803 NUP54Q7Z3B4 507 aa18.89■□□□□ 0.61
UPF1-201ENST00000262803 DAW1Q8N136 415 aa18.89■□□□□ 0.61
UPF1-201ENST00000262803 MYOCQ99972 504 aa18.89■□□□□ 0.61
UPF1-201ENST00000262803 IGSF9Q9P2J2 1179 aa18.89■□□□□ 0.61
UPF1-201ENST00000262803 OGDHLQ9ULD0 1010 aa18.89■□□□□ 0.61
UPF1-201ENST00000262803 CPQQ9Y646 472 aa18.89■□□□□ 0.61
UPF1-201ENST00000262803 PMM2O15305 246 aa18.89■□□□□ 0.61
UPF1-201ENST00000262803 SAGP10523 405 aaPredicted RBP18.89■□□□□ 0.61
UPF1-201ENST00000262803 NMBRP28336 390 aa18.89■□□□□ 0.61
UPF1-201ENST00000262803 DAOAP59103 153 aa18.89■□□□□ 0.61
UPF1-201ENST00000262803 UBXN11Q5T124 520 aa18.89■□□□□ 0.61
UPF1-201ENST00000262803 TRMT10BQ6PF06 316 aaKnown RBP18.89■□□□□ 0.61
UPF1-201ENST00000262803 NTAN1Q96AB6 310 aa18.89■□□□□ 0.61
UPF1-201ENST00000262803 PSKH2Q96QS6 385 aa18.89■□□□□ 0.61
UPF1-201ENST00000262803 SRMSQ9H3Y6 488 aa18.89■□□□□ 0.61
UPF1-201ENST00000262803 ZNF282Q9UDV7 671 aaPredicted RBP18.89■□□□□ 0.61
UPF1-201ENST00000262803 ARHGEF33A8MVX0 844 aa18.88■□□□□ 0.61
UPF1-201ENST00000262803 TMEM63AO94886 807 aa18.88■□□□□ 0.61
UPF1-201ENST00000262803 MT-CYBP00156 380 aaPredicted RBP18.88■□□□□ 0.61
UPF1-201ENST00000262803 ZNF280AP59817 542 aaPredicted RBP18.88■□□□□ 0.61
UPF1-201ENST00000262803 FPGSQ05932 587 aa18.88■□□□□ 0.61
UPF1-201ENST00000262803 RALGPS2Q86X27 583 aaPredicted RBP18.88■□□□□ 0.61
UPF1-201ENST00000262803 PDPRQ8NCN5 879 aa18.88■□□□□ 0.61
UPF1-201ENST00000262803 C7orf57Q8NEG2 295 aa18.88■□□□□ 0.61
UPF1-201ENST00000262803 TRPV1Q8NER1 839 aa18.88■□□□□ 0.61
UPF1-201ENST00000262803 EFHD2Q96C19 240 aaPredicted RBP18.88■□□□□ 0.61
UPF1-201ENST00000262803 RNF31Q96EP0 1072 aa18.88■□□□□ 0.61
UPF1-201ENST00000262803 VSTM5A8MXK1 200 aa18.88■□□□□ 0.61
UPF1-201ENST00000262803 AREL1O15033 823 aa18.88■□□□□ 0.61
UPF1-201ENST00000262803 STBD1O95210 358 aa18.88■□□□□ 0.61
UPF1-201ENST00000262803 DHFRP00374 187 aa18.88■□□□□ 0.61
UPF1-201ENST00000262803 FOXN2P32314 431 aa18.88■□□□□ 0.61
UPF1-201ENST00000262803 PIK3CBP42338 1070 aa18.88■□□□□ 0.61
UPF1-201ENST00000262803 LILRA4P59901 499 aa18.88■□□□□ 0.61
UPF1-201ENST00000262803 SLC10A6Q3KNW5 377 aa18.88■□□□□ 0.61
UPF1-201ENST00000262803 LMLNQ96KR4 655 aa18.88■□□□□ 0.61
UPF1-201ENST00000262803 GPER1Q99527 375 aa18.88■□□□□ 0.61
UPF1-201ENST00000262803 WRAP73Q9P2S5 460 aaPredicted RBP18.88■□□□□ 0.61
UPF1-201ENST00000262803 FBXW11Q9UKB1 542 aa18.88■□□□□ 0.61
UPF1-201ENST00000262803 PCDHGB5Q9Y5G0 923 aa18.88■□□□□ 0.61
UPF1-201ENST00000262803 DUXAA6NLW8 204 aa18.88■□□□□ 0.61
UPF1-201ENST00000262803 CCL22O00626 93 aa18.88■□□□□ 0.61
UPF1-201ENST00000262803 AKAP8O43823 692 aaKnown RBP18.88■□□□□ 0.61
UPF1-201ENST00000262803 TNFRSF21O75509 655 aa18.88■□□□□ 0.61
UPF1-201ENST00000262803 CLCQ05315 142 aa18.88■□□□□ 0.61
UPF1-201ENST00000262803 SUZ12Q15022 739 aaKnown RBP18.88■□□□□ 0.61
UPF1-201ENST00000262803 KIAA0930Q6ICG6 404 aaPredicted RBP18.88■□□□□ 0.61
UPF1-201ENST00000262803 VITQ6UXI7 678 aa18.88■□□□□ 0.61
UPF1-201ENST00000262803 TAC4Q86UU9 113 aa18.88■□□□□ 0.61
UPF1-201ENST00000262803 RASGEF1AQ8N9B8 481 aa18.88■□□□□ 0.61
UPF1-201ENST00000262803 CAMK1GQ96NX5 476 aa18.88■□□□□ 0.61
UPF1-201ENST00000262803 TMEM150CB9EJG8 249 aa18.88■□□□□ 0.61
UPF1-201ENST00000262803 REM1O75628 298 aa18.88■□□□□ 0.61
UPF1-201ENST00000262803 VNN1O95497 513 aa18.88■□□□□ 0.61
UPF1-201ENST00000262803 C8AP07357 584 aa18.88■□□□□ 0.61
UPF1-201ENST00000262803 PLA2G4EQ3MJ16 856 aa18.88■□□□□ 0.61
UPF1-201ENST00000262803 C6orf52Q5T4I8 152 aa18.88■□□□□ 0.61
UPF1-201ENST00000262803 TMEM164Q5U3C3 297 aa18.88■□□□□ 0.61
UPF1-201ENST00000262803 CDH24Q86UP0 819 aa18.88■□□□□ 0.61
UPF1-201ENST00000262803 NRSN1Q8IZ57 195 aa18.88■□□□□ 0.61
UPF1-201ENST00000262803 UNC93B1Q9H1C4 597 aa18.88■□□□□ 0.61
UPF1-201ENST00000262803 ITM2CQ9NQX7 267 aa18.88■□□□□ 0.61
UPF1-201ENST00000262803 RAB26Q9ULW5 256 aa18.88■□□□□ 0.61
UPF1-201ENST00000262803 PCDHGB7Q9Y5F8 929 aa18.88■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms