RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 TSPYL6Q8N831 410 aa0.41□□□□□ -2.34
VPS35-212ENST00000640313 TMEM116Q8NCL8 245 aa0.41□□□□□ -2.34
VPS35-212ENST00000640313 MYRIPQ8NFW9 859 aa0.41□□□□□ -2.34
VPS35-212ENST00000640313 OR14L1PQ8NHC6 308 aa0.41□□□□□ -2.34
VPS35-212ENST00000640313 METTL6Q8TCB7 284 aa0.41□□□□□ -2.34
VPS35-212ENST00000640313 RASL10AQ92737 203 aa0.41□□□□□ -2.34
VPS35-212ENST00000640313 APBB2Q92870 758 aa0.41□□□□□ -2.34
VPS35-212ENST00000640313 GTF3C6Q969F1 213 aa0.41□□□□□ -2.34
VPS35-212ENST00000640313 PHF21AQ96BD5 680 aa0.41□□□□□ -2.34
VPS35-212ENST00000640313 OTULINQ96BN8 352 aa0.41□□□□□ -2.34
VPS35-212ENST00000640313 INTS12Q96CB8 462 aaKnown RBP0.41□□□□□ -2.34
VPS35-212ENST00000640313 HVCN1Q96D96 273 aa0.41□□□□□ -2.34
VPS35-212ENST00000640313 ARHGEF26Q96DR7 871 aa0.41□□□□□ -2.34
VPS35-212ENST00000640313 OMA1Q96E52 524 aa0.41□□□□□ -2.34
VPS35-212ENST00000640313 RRP36Q96EU6 259 aaKnown RBP0.41□□□□□ -2.34
VPS35-212ENST00000640313 LINGO1Q96FE5 620 aa0.41□□□□□ -2.34
VPS35-212ENST00000640313 SLC47A1Q96FL8 570 aa0.41□□□□□ -2.34
VPS35-212ENST00000640313 METTL2AQ96IZ6 378 aaKnown RBP0.41□□□□□ -2.34
VPS35-212ENST00000640313 C1orf74Q96LT6 269 aa0.41□□□□□ -2.34
VPS35-212ENST00000640313 PPM1MQ96MI6 270 aa0.41□□□□□ -2.34
VPS35-212ENST00000640313 WDFY2Q96P53 400 aa0.41□□□□□ -2.34
VPS35-212ENST00000640313 QRFPRQ96P65 431 aa0.41□□□□□ -2.34
VPS35-212ENST00000640313 MAP7D2Q96T17 732 aa0.41□□□□□ -2.34
VPS35-212ENST00000640313 SEPT5Q99719 369 aaPredicted RBP0.41□□□□□ -2.34
VPS35-212ENST00000640313 NEURL2Q9BR09 285 aa0.41□□□□□ -2.34
VPS35-212ENST00000640313 PCGF1Q9BSM1 259 aa0.41□□□□□ -2.34
VPS35-212ENST00000640313 H2AFJQ9BTM1 129 aa0.41□□□□□ -2.34
VPS35-212ENST00000640313 RPP25Q9BUL9 199 aaKnown RBP0.41□□□□□ -2.34
VPS35-212ENST00000640313 ITPAQ9BY32 194 aa0.41□□□□□ -2.34
VPS35-212ENST00000640313 PAIP1Q9H074 479 aaKnown RBP0.41□□□□□ -2.34
VPS35-212ENST00000640313 NDST4Q9H3R1 872 aa0.41□□□□□ -2.34
VPS35-212ENST00000640313 MUC13Q9H3R2 512 aa0.41□□□□□ -2.34
VPS35-212ENST00000640313 PIGMQ9H3S5 423 aa0.41□□□□□ -2.34
VPS35-212ENST00000640313 SLA2Q9H6Q3 261 aa0.41□□□□□ -2.34
VPS35-212ENST00000640313 KIF9Q9HAQ2 790 aa0.41□□□□□ -2.34
VPS35-212ENST00000640313 BPIFA1Q9NP55 256 aa0.41□□□□□ -2.34
VPS35-212ENST00000640313 GPR108Q9NPR9 543 aa0.41□□□□□ -2.34
VPS35-212ENST00000640313 ZNF71Q9NQZ8 489 aaPredicted RBP0.41□□□□□ -2.34
VPS35-212ENST00000640313 PCDHB16Q9NRJ7 776 aa0.41□□□□□ -2.34
VPS35-212ENST00000640313 INTS10Q9NVR2 710 aaKnown RBP0.41□□□□□ -2.34
VPS35-212ENST00000640313 PAG1Q9NWQ8 432 aa0.41□□□□□ -2.34
VPS35-212ENST00000640313 TRMT1Q9NXH9 659 aaKnown RBP0.41□□□□□ -2.34
VPS35-212ENST00000640313 TAS2R10Q9NYW0 307 aa0.41□□□□□ -2.34
VPS35-212ENST00000640313 COPG2Q9UBF2 871 aa0.41□□□□□ -2.34
VPS35-212ENST00000640313 DNAJB4Q9UDY4 337 aa0.41□□□□□ -2.34
VPS35-212ENST00000640313 CNOT8Q9UFF9 292 aaKnown RBP0.41□□□□□ -2.34
VPS35-212ENST00000640313 POLG2Q9UHN1 485 aa0.41□□□□□ -2.34
VPS35-212ENST00000640313 FBXL2Q9UKC9 423 aa0.41□□□□□ -2.34
VPS35-212ENST00000640313 RCOR1Q9UKL0 485 aa0.41□□□□□ -2.34
VPS35-212ENST00000640313 POMT2Q9UKY4 750 aa0.41□□□□□ -2.34
VPS35-212ENST00000640313 TTC7AQ9ULT0 858 aaPredicted RBP0.41□□□□□ -2.34
VPS35-212ENST00000640313 ERVK-11Q9UQG0 969 aa0.41□□□□□ -2.34
VPS35-212ENST00000640313 CAMK2AQ9UQM7 478 aa0.41□□□□□ -2.34
VPS35-212ENST00000640313 CRYL1Q9Y2S2 319 aa0.41□□□□□ -2.34
VPS35-212ENST00000640313 AAR2Q9Y312 384 aaKnown RBP0.41□□□□□ -2.34
VPS35-212ENST00000640313 KIF25-AS1Q9Y6Z4 181 aa0.41□□□□□ -2.34
VPS35-212ENST00000640313 FRMD3A2A2Y4 597 aa0.4□□□□□ -2.35
VPS35-212ENST00000640313 LIPT2A6NK58 231 aa0.4□□□□□ -2.35
VPS35-212ENST00000640313 A6NL46 340 aa0.4□□□□□ -2.35
VPS35-212ENST00000640313 SHISA7A6NL88 538 aa0.4□□□□□ -2.35
VPS35-212ENST00000640313 LRRC53A6NM62 1247 aa0.4□□□□□ -2.35
VPS35-212ENST00000640313 EIF4E1BA6NMX2 242 aaKnown RBP0.4□□□□□ -2.35
VPS35-212ENST00000640313 AGAP14A8MT82 685 aa0.4□□□□□ -2.35
VPS35-212ENST00000640313 CDRT15L2A8MXV6 281 aa0.4□□□□□ -2.35
VPS35-212ENST00000640313 PLK4O00444 970 aa0.4□□□□□ -2.35
VPS35-212ENST00000640313 TSPAN4O14817 238 aa0.4□□□□□ -2.35
VPS35-212ENST00000640313 SMAD9O15198 467 aaKnown RBP0.4□□□□□ -2.35
VPS35-212ENST00000640313 OGG1O15527 345 aa0.4□□□□□ -2.35
VPS35-212ENST00000640313 PLPP2O43688 288 aa0.4□□□□□ -2.35
VPS35-212ENST00000640313 SYNCRIPO60506 623 aaKnown RBP0.4□□□□□ -2.35
VPS35-212ENST00000640313 KHDRBS3O75525 346 aaKnown RBP0.4□□□□□ -2.35
VPS35-212ENST00000640313 JRKO75564 520 aa0.4□□□□□ -2.35
VPS35-212ENST00000640313 MTA2O94776 668 aa0.4□□□□□ -2.35
VPS35-212ENST00000640313 TOMM70O94826 608 aa0.4□□□□□ -2.35
VPS35-212ENST00000640313 EML2O95834 649 aa0.4□□□□□ -2.35
VPS35-212ENST00000640313 AGR2O95994 175 aa0.4□□□□□ -2.35
VPS35-212ENST00000640313 NGFP01138 241 aa0.4□□□□□ -2.35
VPS35-212ENST00000640313 CD4P01730 458 aa0.4□□□□□ -2.35
VPS35-212ENST00000640313 GPIP06744 558 aa0.4□□□□□ -2.35
VPS35-212ENST00000640313 PLA2G4BP0C869 781 aa0.4□□□□□ -2.35
VPS35-212ENST00000640313 IGHV4-38-2P0DP08 117 aa0.4□□□□□ -2.35
VPS35-212ENST00000640313 IRF1P10914 325 aa0.4□□□□□ -2.35
VPS35-212ENST00000640313 UBL4AP11441 157 aa0.4□□□□□ -2.35
VPS35-212ENST00000640313 LAMP2P13473 410 aa0.4□□□□□ -2.35
VPS35-212ENST00000640313 LIFP15018 202 aa0.4□□□□□ -2.35
VPS35-212ENST00000640313 CSF2RAP15509 400 aa0.4□□□□□ -2.35
VPS35-212ENST00000640313 MGMTP16455 207 aa0.4□□□□□ -2.35
VPS35-212ENST00000640313 ZNF182P17025 639 aaPredicted RBP0.4□□□□□ -2.35
VPS35-212ENST00000640313 CEBPBP17676 345 aa0.4□□□□□ -2.35
VPS35-212ENST00000640313 CDH2P19022 906 aaPredicted RBP0.4□□□□□ -2.35
VPS35-212ENST00000640313 HRH2P25021 359 aa0.4□□□□□ -2.35
VPS35-212ENST00000640313 PSMA4P25789 261 aaKnown RBP0.4□□□□□ -2.35
VPS35-212ENST00000640313 MAPK4P31152 587 aa0.4□□□□□ -2.35
VPS35-212ENST00000640313 WNT5AP41221 380 aa0.4□□□□□ -2.35
VPS35-212ENST00000640313 GARSP41250 739 aaKnown RBP0.4□□□□□ -2.35
VPS35-212ENST00000640313 MAPK9P45984 424 aa0.4□□□□□ -2.35
VPS35-212ENST00000640313 NR2C2P49116 596 aa0.4□□□□□ -2.35
VPS35-212ENST00000640313 CTCFP49711 727 aaPredicted RBP0.4□□□□□ -2.35
VPS35-212ENST00000640313 GNAQP50148 359 aa0.4□□□□□ -2.35
VPS35-212ENST00000640313 CCR9P51686 369 aa0.4□□□□□ -2.35
Retrieved 100 of 20,778 RNA–protein pairs in 58.6 ms