RNA–Protein interactions for RNA: ENST00000640289.1

GTF3A-209, Transcript of general transcription factor IIIA, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene GTF3A, Length 1,098 nt, Biotype protein coding, Subcellular localisation Cytosol, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF3A-209ENST00000640289 PSMD13Q9UNM6 376 aa12.96□□□□□ -0.33
GTF3A-209ENST00000640289 WDR37Q9Y2I8 494 aa12.96□□□□□ -0.33
GTF3A-209ENST00000640289 PSAT1Q9Y617 370 aa12.96□□□□□ -0.33
GTF3A-209ENST00000640289 KNL1Q8NG31 2342 aa12.96□□□□□ -0.34
GTF3A-209ENST00000640289 FAM186AA6NE01 2351 aa12.95□□□□□ -0.34
GTF3A-209ENST00000640289 C17orf113A0A1B0GUU1 675 aa12.95□□□□□ -0.34
GTF3A-209ENST00000640289 SPAARA0A1B0GVQ0 90 aa12.95□□□□□ -0.34
GTF3A-209ENST00000640289 CXorf49A8MYA2 514 aaPredicted RBP12.95□□□□□ -0.34
GTF3A-209ENST00000640289 QSOX1O00391 747 aa12.95□□□□□ -0.34
GTF3A-209ENST00000640289 KCNJ13O60928 360 aa12.95□□□□□ -0.34
GTF3A-209ENST00000640289 NIPSNAP2O75323 286 aa12.95□□□□□ -0.34
GTF3A-209ENST00000640289 C1QAP02745 245 aa12.95□□□□□ -0.34
GTF3A-209ENST00000640289 AHSGP02765 367 aa12.95□□□□□ -0.34
GTF3A-209ENST00000640289 FTH1P02794 183 aa12.95□□□□□ -0.34
GTF3A-209ENST00000640289 PKMP14618 531 aaKnown RBP12.95□□□□□ -0.34
GTF3A-209ENST00000640289 BRAFP15056 766 aa12.95□□□□□ -0.34
GTF3A-209ENST00000640289 CCR7P32248 378 aa12.95□□□□□ -0.34
GTF3A-209ENST00000640289 PREPP48147 710 aa12.95□□□□□ -0.34
GTF3A-209ENST00000640289 NOVA1P51513 510 aaKnown RBP12.95□□□□□ -0.34
GTF3A-209ENST00000640289 DAB2P98082 770 aa12.95□□□□□ -0.34
GTF3A-209ENST00000640289 BOP1Q14137 746 aaKnown RBP12.95□□□□□ -0.34
GTF3A-209ENST00000640289 TRIP6Q15654 476 aaKnown RBP12.95□□□□□ -0.34
GTF3A-209ENST00000640289 ERCC6LQ2NKX8 1250 aa12.95□□□□□ -0.34
GTF3A-209ENST00000640289 ZNF549Q6P9A3 640 aa12.95□□□□□ -0.34
GTF3A-209ENST00000640289 LRRC6Q86X45 466 aa12.95□□□□□ -0.34
GTF3A-209ENST00000640289 RELL1Q8IUW5 271 aa12.95□□□□□ -0.34
GTF3A-209ENST00000640289 HM13Q8TCT9 377 aa12.95□□□□□ -0.34
GTF3A-209ENST00000640289 FBF1Q8TES7 1133 aa12.95□□□□□ -0.34
GTF3A-209ENST00000640289 ELMO1Q92556 727 aa12.95□□□□□ -0.34
GTF3A-209ENST00000640289 FAM136AQ96C01 138 aa12.95□□□□□ -0.34
GTF3A-209ENST00000640289 TSPYL1Q9H0U9 437 aa12.95□□□□□ -0.34
GTF3A-209ENST00000640289 COG4Q9H9E3 785 aa12.95□□□□□ -0.34
GTF3A-209ENST00000640289 GALPQ9UBC7 116 aa12.95□□□□□ -0.34
GTF3A-209ENST00000640289 PADI4Q9UM07 663 aa12.95□□□□□ -0.34
GTF3A-209ENST00000640289 VPS9D1Q9Y2B5 631 aa12.95□□□□□ -0.34
GTF3A-209ENST00000640289 RIF1Q5UIP0 2472 aaKnown RBP12.95□□□□□ -0.34
GTF3A-209ENST00000640289 GVINP1Q7Z2Y8 2422 aa12.94□□□□□ -0.34
GTF3A-209ENST00000640289 LAMA1P25391 3075 aa12.94□□□□□ -0.34
GTF3A-209ENST00000640289 TDRD6O60522 2096 aaKnown RBP12.94□□□□□ -0.34
GTF3A-209ENST00000640289 FAM159BA6NKW6 160 aa12.94□□□□□ -0.34
GTF3A-209ENST00000640289 TNFSF14O43557 240 aa12.94□□□□□ -0.34
GTF3A-209ENST00000640289 KCNK5O95279 499 aa12.94□□□□□ -0.34
GTF3A-209ENST00000640289 ESR1P03372 595 aa12.94□□□□□ -0.34
GTF3A-209ENST00000640289 GSTA2P09210 222 aa12.94□□□□□ -0.34
GTF3A-209ENST00000640289 CKMT1AP12532 417 aa12.94□□□□□ -0.34
GTF3A-209ENST00000640289 F3P13726 295 aa12.94□□□□□ -0.34
GTF3A-209ENST00000640289 CKMT2P17540 419 aa12.94□□□□□ -0.34
GTF3A-209ENST00000640289 SDHBP21912 280 aa12.94□□□□□ -0.34
GTF3A-209ENST00000640289 KCNA4P22459 653 aa12.94□□□□□ -0.34
GTF3A-209ENST00000640289 TNFRSF8P28908 595 aa12.94□□□□□ -0.34
GTF3A-209ENST00000640289 PDHA2P29803 388 aa12.94□□□□□ -0.34
GTF3A-209ENST00000640289 CSE1LP55060 971 aaKnown RBP12.94□□□□□ -0.34
GTF3A-209ENST00000640289 ADARP55265 1226 aaKnown RBP12.94□□□□□ -0.34
GTF3A-209ENST00000640289 VSNL1P62760 191 aa12.94□□□□□ -0.34
GTF3A-209ENST00000640289 NAA30Q147X3 362 aaPredicted RBP12.94□□□□□ -0.34
GTF3A-209ENST00000640289 CLCA4Q14CN2 919 aa12.94□□□□□ -0.34
GTF3A-209ENST00000640289 EFTUD2Q15029 972 aaKnown RBP eCLIP12.94□□□□□ -0.34
GTF3A-209ENST00000640289 NR0B2Q15466 257 aa12.94□□□□□ -0.34
GTF3A-209ENST00000640289 KBTBD12Q3ZCT8 623 aa12.94□□□□□ -0.34
GTF3A-209ENST00000640289 C14orf28Q4W4Y0 310 aa12.94□□□□□ -0.34
GTF3A-209ENST00000640289 METRNLQ641Q3 311 aa12.94□□□□□ -0.34
GTF3A-209ENST00000640289 GUSBP11Q6P575 273 aa12.94□□□□□ -0.34
GTF3A-209ENST00000640289 IYDQ6PHW0 289 aa12.94□□□□□ -0.34
GTF3A-209ENST00000640289 KIAA0408Q6ZU52 694 aa12.94□□□□□ -0.34
GTF3A-209ENST00000640289 CEP128Q6ZU80 1094 aa12.94□□□□□ -0.34
GTF3A-209ENST00000640289 C17orf82Q86X59 251 aaPredicted RBP12.94□□□□□ -0.34
GTF3A-209ENST00000640289 SFRP1Q8N474 314 aa12.94□□□□□ -0.34
GTF3A-209ENST00000640289 ARL14Q8N4G2 192 aa12.94□□□□□ -0.34
GTF3A-209ENST00000640289 SPDYE1Q8NFV5 336 aaPredicted RBP12.94□□□□□ -0.34
GTF3A-209ENST00000640289 GABPB2Q8TAK5 448 aaPredicted RBP12.94□□□□□ -0.34
GTF3A-209ENST00000640289 SLC37A2Q8TED4 501 aa12.94□□□□□ -0.34
GTF3A-209ENST00000640289 UBXN4Q92575 508 aa12.94□□□□□ -0.34
GTF3A-209ENST00000640289 GLMNQ92990 594 aa12.94□□□□□ -0.34
GTF3A-209ENST00000640289 NDNQ99608 321 aa12.94□□□□□ -0.34
GTF3A-209ENST00000640289 CDC6Q99741 560 aa12.94□□□□□ -0.34
GTF3A-209ENST00000640289 WWP1Q9H0M0 922 aa12.94□□□□□ -0.34
GTF3A-209ENST00000640289 SARS2Q9NP81 518 aaKnown RBP12.94□□□□□ -0.34
GTF3A-209ENST00000640289 MED16Q9Y2X0 877 aa12.94□□□□□ -0.34
GTF3A-209ENST00000640289 PCDHB1Q9Y5F3 818 aa12.94□□□□□ -0.34
GTF3A-209ENST00000640289 BPTFQ12830 3046 aa12.94□□□□□ -0.34
GTF3A-209ENST00000640289 PRAMEF33A0A0G2JMD5 474 aa12.93□□□□□ -0.34
GTF3A-209ENST00000640289 SLC5A10A0PJK1 596 aa12.93□□□□□ -0.34
GTF3A-209ENST00000640289 CPED1A4D0V7 1026 aa12.93□□□□□ -0.34
GTF3A-209ENST00000640289 EME2A4GXA9 379 aaPredicted RBP12.93□□□□□ -0.34
GTF3A-209ENST00000640289 OR52A4PA6NMU1 304 aa12.93□□□□□ -0.34
GTF3A-209ENST00000640289 LIN7AO14910 233 aaPredicted RBP12.93□□□□□ -0.34
GTF3A-209ENST00000640289 CASC3O15234 703 aaKnown RBP12.93□□□□□ -0.34
GTF3A-209ENST00000640289 ACSL3O95573 720 aa12.93□□□□□ -0.34
GTF3A-209ENST00000640289 CEACAM1P13688 526 aa12.93□□□□□ -0.34
GTF3A-209ENST00000640289 CHRM3P20309 590 aa12.93□□□□□ -0.34
GTF3A-209ENST00000640289 AOAHP28039 575 aa12.93□□□□□ -0.34
GTF3A-209ENST00000640289 STX2P32856 288 aa12.93□□□□□ -0.34
GTF3A-209ENST00000640289 CD151P48509 253 aa12.93□□□□□ -0.34
GTF3A-209ENST00000640289 ACADVLP49748 655 aa12.93□□□□□ -0.34
GTF3A-209ENST00000640289 TUBB4BP68371 445 aa12.93□□□□□ -0.34
GTF3A-209ENST00000640289 SLMAPQ14BN4 828 aa12.93□□□□□ -0.34
GTF3A-209ENST00000640289 SYTL3Q4VX76 610 aa12.93□□□□□ -0.34
GTF3A-209ENST00000640289 CCDC157Q569K6 752 aa12.93□□□□□ -0.34
GTF3A-209ENST00000640289 PERM1Q5SV97 790 aa12.93□□□□□ -0.34
GTF3A-209ENST00000640289 RBM20Q5T481 1227 aaKnown RBP12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms