RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 MYO18AQ92614 2054 aaKnown RBP6.06□□□□□ -1.44
SCN1A-217ENST00000637988 CDK5RAP2Q96SN8 1893 aa6.06□□□□□ -1.44
SCN1A-217ENST00000637988 NPIPA2E9PIF3 369 aa6.06□□□□□ -1.44
SCN1A-217ENST00000637988 NPIPA3F8WFD2 350 aa6.06□□□□□ -1.44
SCN1A-217ENST00000637988 LDB2O43679 373 aa6.06□□□□□ -1.44
SCN1A-217ENST00000637988 BCL10O95999 233 aa6.06□□□□□ -1.44
SCN1A-217ENST00000637988 PDYNP01213 254 aa6.06□□□□□ -1.44
SCN1A-217ENST00000637988 CYP11A1P05108 521 aa6.06□□□□□ -1.44
SCN1A-217ENST00000637988 TARSP26639 723 aaKnown RBP6.06□□□□□ -1.44
SCN1A-217ENST00000637988 NSG1P42857 185 aa6.06□□□□□ -1.44
SCN1A-217ENST00000637988 MZT1Q08AG7 82 aa6.06□□□□□ -1.44
SCN1A-217ENST00000637988 FASTKD3Q14CZ7 662 aaKnown RBP6.06□□□□□ -1.44
SCN1A-217ENST00000637988 AKIRIN2Q53H80 203 aa6.06□□□□□ -1.44
SCN1A-217ENST00000637988 INTS6LQ5JSJ4 861 aaKnown RBP6.06□□□□□ -1.44
SCN1A-217ENST00000637988 PTCHD4Q6ZW05 846 aa6.06□□□□□ -1.44
SCN1A-217ENST00000637988 KATNAL2Q8IYT4 538 aa6.06□□□□□ -1.44
SCN1A-217ENST00000637988 C11orf65Q8NCR3 313 aa6.06□□□□□ -1.44
SCN1A-217ENST00000637988 EXOSC8Q96B26 276 aaKnown RBP6.06□□□□□ -1.44
SCN1A-217ENST00000637988 ARL5BQ96KC2 179 aa6.06□□□□□ -1.44
SCN1A-217ENST00000637988 NELL2Q99435 816 aa6.06□□□□□ -1.44
SCN1A-217ENST00000637988 CMKLR1Q99788 373 aa6.06□□□□□ -1.44
SCN1A-217ENST00000637988 MGME1Q9BQP7 344 aa6.06□□□□□ -1.44
SCN1A-217ENST00000637988 CHCHD6Q9BRQ6 235 aa6.06□□□□□ -1.44
SCN1A-217ENST00000637988 NMUR1Q9HB89 426 aa6.06□□□□□ -1.44
SCN1A-217ENST00000637988 RBM12Q9NTZ6 932 aaKnown RBP6.06□□□□□ -1.44
SCN1A-217ENST00000637988 TAS2R14Q9NYV8 317 aa6.06□□□□□ -1.44
SCN1A-217ENST00000637988 ZNF490Q9ULM2 529 aaPredicted RBP6.06□□□□□ -1.44
SCN1A-217ENST00000637988 DHRS7Q9Y394 339 aa6.06□□□□□ -1.44
SCN1A-217ENST00000637988 ATRNO75882 1429 aa6.06□□□□□ -1.44
SCN1A-217ENST00000637988 A0A1W2PRU2 124 aa6.06□□□□□ -1.44
SCN1A-217ENST00000637988 GLSO94925 669 aaPredicted RBP6.06□□□□□ -1.44
SCN1A-217ENST00000637988 PNMA6AP0CW24 399 aaPredicted RBP6.06□□□□□ -1.44
SCN1A-217ENST00000637988 ZNF35P13682 527 aa6.06□□□□□ -1.44
SCN1A-217ENST00000637988 GLRA2P23416 452 aa6.06□□□□□ -1.44
SCN1A-217ENST00000637988 MAGEA9P43362 315 aa6.06□□□□□ -1.44
SCN1A-217ENST00000637988 CLCNKBP51801 687 aa6.06□□□□□ -1.44
SCN1A-217ENST00000637988 CLRN1P58418 232 aa6.06□□□□□ -1.44
SCN1A-217ENST00000637988 PUM1Q14671 1186 aaKnown RBP eCLIP6.06□□□□□ -1.44
SCN1A-217ENST00000637988 EMC10Q5UCC4 262 aa6.06□□□□□ -1.44
SCN1A-217ENST00000637988 FAM43BQ6ZT52 329 aaPredicted RBP6.06□□□□□ -1.44
SCN1A-217ENST00000637988 ZFPM1Q8IX07 1006 aa6.06□□□□□ -1.44
SCN1A-217ENST00000637988 TC2NQ8N9U0 490 aa6.06□□□□□ -1.44
SCN1A-217ENST00000637988 TOR1AIP2Q8NFQ8 470 aa6.06□□□□□ -1.44
SCN1A-217ENST00000637988 MFSD3Q96ES6 412 aa6.06□□□□□ -1.44
SCN1A-217ENST00000637988 SLC29A3Q9BZD2 475 aa6.06□□□□□ -1.44
SCN1A-217ENST00000637988 NELFAQ9H3P2 528 aa6.06□□□□□ -1.44
SCN1A-217ENST00000637988 TMBIM4Q9HC24 238 aa6.06□□□□□ -1.44
SCN1A-217ENST00000637988 CD84Q9UIB8 345 aa6.06□□□□□ -1.44
SCN1A-217ENST00000637988 PCDHGA2Q9Y5H1 932 aa6.06□□□□□ -1.44
SCN1A-217ENST00000637988 BACE2Q9Y5Z0 518 aa6.06□□□□□ -1.44
SCN1A-217ENST00000637988 TRIM64CA6NLI5 447 aa6.06□□□□□ -1.44
SCN1A-217ENST00000637988 DUXAA6NLW8 204 aa6.06□□□□□ -1.44
SCN1A-217ENST00000637988 USP2O75604 605 aaPredicted RBP6.06□□□□□ -1.44
SCN1A-217ENST00000637988 FGF18O76093 207 aa6.06□□□□□ -1.44
SCN1A-217ENST00000637988 KDELR1P24390 212 aa6.06□□□□□ -1.44
SCN1A-217ENST00000637988 ECHS1P30084 290 aa6.06□□□□□ -1.44
SCN1A-217ENST00000637988 PSMD7P51665 324 aa6.06□□□□□ -1.44
SCN1A-217ENST00000637988 YBEYP58557 167 aaPredicted RBP6.06□□□□□ -1.44
SCN1A-217ENST00000637988 TNK2Q07912 1038 aa6.06□□□□□ -1.44
SCN1A-217ENST00000637988 RFTN1Q14699 578 aaPredicted RBP6.06□□□□□ -1.44
SCN1A-217ENST00000637988 TMEM17Q86X19 198 aa6.06□□□□□ -1.44
SCN1A-217ENST00000637988 ARL14Q8N4G2 192 aa6.06□□□□□ -1.44
SCN1A-217ENST00000637988 RDH11Q8TC12 318 aa6.06□□□□□ -1.44
SCN1A-217ENST00000637988 PIH1D2Q8WWB5 315 aa6.06□□□□□ -1.44
SCN1A-217ENST00000637988 NANOS1Q8WY41 292 aaKnown RBP6.06□□□□□ -1.44
SCN1A-217ENST00000637988 NXPE2Q96DL1 559 aa6.06□□□□□ -1.44
SCN1A-217ENST00000637988 APOPT1Q96IL0 206 aa6.06□□□□□ -1.44
SCN1A-217ENST00000637988 SEC16BQ96JE7 1060 aa6.06□□□□□ -1.44
SCN1A-217ENST00000637988 KLC4Q9NSK0 619 aa6.06□□□□□ -1.44
SCN1A-217ENST00000637988 IFT80Q9P2H3 777 aaPredicted RBP6.06□□□□□ -1.44
SCN1A-217ENST00000637988 MEMO1Q9Y316 297 aa6.06□□□□□ -1.44
SCN1A-217ENST00000637988 SDK1Q7Z5N4 2213 aa6.06□□□□□ -1.44
SCN1A-217ENST00000637988 MYH7BA7E2Y1 1941 aa6.06□□□□□ -1.44
SCN1A-217ENST00000637988 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP6.06□□□□□ -1.44
SCN1A-217ENST00000637988 TPP1O14773 563 aa6.06□□□□□ -1.44
SCN1A-217ENST00000637988 PRAMEF1O95521 474 aa6.06□□□□□ -1.44
SCN1A-217ENST00000637988 LINGO3P0C6S8 592 aa6.06□□□□□ -1.44
SCN1A-217ENST00000637988 ACADSP16219 412 aa6.06□□□□□ -1.44
SCN1A-217ENST00000637988 ZNF3P17036 446 aa6.06□□□□□ -1.44
SCN1A-217ENST00000637988 ACVR2AP27037 513 aa6.06□□□□□ -1.44
SCN1A-217ENST00000637988 S100A7P31151 101 aa6.06□□□□□ -1.44
SCN1A-217ENST00000637988 RPL14P50914 215 aaKnown RBP6.06□□□□□ -1.44
SCN1A-217ENST00000637988 MELKQ14680 651 aa6.06□□□□□ -1.44
SCN1A-217ENST00000637988 OCLNQ16625 522 aa6.06□□□□□ -1.44
SCN1A-217ENST00000637988 FBXO46Q6PJ61 603 aaPredicted RBP6.06□□□□□ -1.44
SCN1A-217ENST00000637988 GDPD4Q6W3E5 623 aa6.06□□□□□ -1.44
SCN1A-217ENST00000637988 TPRG1Q6ZUI0 275 aa6.06□□□□□ -1.44
SCN1A-217ENST00000637988 LRRC70Q7Z2Q7 622 aa6.06□□□□□ -1.44
SCN1A-217ENST00000637988 APLFQ8IW19 511 aaPredicted RBP6.06□□□□□ -1.44
SCN1A-217ENST00000637988 OR52K1Q8NGK4 314 aa6.06□□□□□ -1.44
SCN1A-217ENST00000637988 DNAJC9Q8WXX5 260 aa6.06□□□□□ -1.44
SCN1A-217ENST00000637988 HDAC10Q969S8 669 aa6.06□□□□□ -1.44
SCN1A-217ENST00000637988 TBATAQ96M53 351 aa6.06□□□□□ -1.44
SCN1A-217ENST00000637988 ACSS2Q9NR19 701 aa6.06□□□□□ -1.44
SCN1A-217ENST00000637988 GPR160Q9UJ42 338 aa6.06□□□□□ -1.44
SCN1A-217ENST00000637988 CYP8B1Q9UNU6 501 aa6.06□□□□□ -1.44
SCN1A-217ENST00000637988 GPR34Q9UPC5 381 aa6.06□□□□□ -1.44
SCN1A-217ENST00000637988 SPEF2Q9C093 1822 aa6.06□□□□□ -1.44
SCN1A-217ENST00000637988 BAZ2AQ9UIF9 1905 aaKnown RBP6.05□□□□□ -1.44
SCN1A-217ENST00000637988 FAM86B1E9PN63 330 aa6.05□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms