RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 OR2AG2A6NM03 316 aa18.94■□□□□ 0.62
CLN3-262ENST00000637699 TCP11X1B4DZS4 312 aa18.94■□□□□ 0.62
CLN3-262ENST00000637699 PPP1R12AO14974 1030 aaPredicted RBP18.94■□□□□ 0.62
CLN3-262ENST00000637699 DDX3YO15523 660 aaKnown RBP18.94■□□□□ 0.62
CLN3-262ENST00000637699 KLK3P07288 261 aaPredicted RBP18.94■□□□□ 0.62
CLN3-262ENST00000637699 H2AFZP0C0S5 128 aa18.94■□□□□ 0.62
CLN3-262ENST00000637699 LPOP22079 712 aaPredicted RBP18.94■□□□□ 0.62
CLN3-262ENST00000637699 HMGCLP35914 325 aa18.94■□□□□ 0.62
CLN3-262ENST00000637699 ARCN1P48444 511 aaKnown RBP18.94■□□□□ 0.62
CLN3-262ENST00000637699 MRPL49Q13405 166 aaKnown RBP18.94■□□□□ 0.62
CLN3-262ENST00000637699 MESDQ14696 234 aa18.94■□□□□ 0.62
CLN3-262ENST00000637699 IQCB1Q15051 598 aa18.94■□□□□ 0.62
CLN3-262ENST00000637699 PPP2R5EQ16537 467 aa18.94■□□□□ 0.62
CLN3-262ENST00000637699 TMTC4Q5T4D3 741 aa18.94■□□□□ 0.62
CLN3-262ENST00000637699 PRAMEF17Q5VTA0 474 aa18.94■□□□□ 0.62
CLN3-262ENST00000637699 FAM69BQ5VUD6 431 aa18.94■□□□□ 0.62
CLN3-262ENST00000637699 SLC9A4Q6AI14 798 aa18.94■□□□□ 0.62
CLN3-262ENST00000637699 LCN10Q6JVE6 187 aa18.94■□□□□ 0.62
CLN3-262ENST00000637699 JMJD6Q6NYC1 403 aaPredicted RBP18.94■□□□□ 0.62
CLN3-262ENST00000637699 FBXO38Q6PIJ6 1188 aa18.94■□□□□ 0.62
CLN3-262ENST00000637699 FAM151BQ6UXP7 276 aa18.94■□□□□ 0.62
CLN3-262ENST00000637699 H2AFVQ71UI9 128 aa18.94■□□□□ 0.62
CLN3-262ENST00000637699 ZNF501Q96CX3 271 aaPredicted RBP18.94■□□□□ 0.62
CLN3-262ENST00000637699 PACSIN1Q9BY11 444 aa18.94■□□□□ 0.62
CLN3-262ENST00000637699 ZCCHC2Q9C0B9 1178 aaKnown RBP18.94■□□□□ 0.62
CLN3-262ENST00000637699 SLAMF7Q9NQ25 335 aa18.94■□□□□ 0.62
CLN3-262ENST00000637699 CAPN11Q9UMQ6 739 aa18.94■□□□□ 0.62
CLN3-262ENST00000637699 SNX7Q9UNH6 387 aa18.94■□□□□ 0.62
CLN3-262ENST00000637699 CACNA1DQ01668 2161 aa18.93■□□□□ 0.62
CLN3-262ENST00000637699 A0A0A6YYK5 440 aaPredicted RBP18.93■□□□□ 0.62
CLN3-262ENST00000637699 OR6C74A6NCV1 312 aa18.93■□□□□ 0.62
CLN3-262ENST00000637699 A6NL46 340 aa18.93■□□□□ 0.62
CLN3-262ENST00000637699 ZNF185O15231 689 aa18.93■□□□□ 0.62
CLN3-262ENST00000637699 ZBTB11O95625 1053 aaPredicted RBP18.93■□□□□ 0.62
CLN3-262ENST00000637699 MTHFD1P11586 935 aaKnown RBP18.93■□□□□ 0.62
CLN3-262ENST00000637699 CA5AP35218 305 aa18.93■□□□□ 0.62
CLN3-262ENST00000637699 DYNLT1P63172 113 aa18.93■□□□□ 0.62
CLN3-262ENST00000637699 SLC14A2Q15849 920 aa18.93■□□□□ 0.62
CLN3-262ENST00000637699 TEX44Q53QW1 395 aa18.93■□□□□ 0.62
CLN3-262ENST00000637699 LDLRAP1Q5SW96 308 aa18.93■□□□□ 0.62
CLN3-262ENST00000637699 IZUMO3Q5VZ72 239 aa18.93■□□□□ 0.62
CLN3-262ENST00000637699 ARMC6Q6NXE6 501 aa18.93■□□□□ 0.62
CLN3-262ENST00000637699 DUS1LQ6P1R4 473 aaKnown RBP18.93■□□□□ 0.62
CLN3-262ENST00000637699 ZNF517Q6ZMY9 492 aaPredicted RBP18.93■□□□□ 0.62
CLN3-262ENST00000637699 OOSP2Q86WS3 158 aa18.93■□□□□ 0.62
CLN3-262ENST00000637699 SLC25A41Q8N5S1 370 aa18.93■□□□□ 0.62
CLN3-262ENST00000637699 ENDOVQ8N8Q3 282 aaKnown RBP18.93■□□□□ 0.62
CLN3-262ENST00000637699 FDCSPQ8NFU4 85 aa18.93■□□□□ 0.62
CLN3-262ENST00000637699 PRR7Q8TB68 274 aa18.93■□□□□ 0.62
CLN3-262ENST00000637699 ADAMTS17Q8TE56 1095 aa18.93■□□□□ 0.62
CLN3-262ENST00000637699 CTNNBL1Q8WYA6 563 aaPredicted RBP18.93■□□□□ 0.62
CLN3-262ENST00000637699 PPM1MQ96MI6 270 aa18.93■□□□□ 0.62
CLN3-262ENST00000637699 OLFM3Q96PB7 478 aa18.93■□□□□ 0.62
CLN3-262ENST00000637699 INSM2Q96T92 566 aaPredicted RBP18.93■□□□□ 0.62
CLN3-262ENST00000637699 SOHLH2Q9NX45 425 aa18.93■□□□□ 0.62
CLN3-262ENST00000637699 NENFQ9UMX5 172 aa18.93■□□□□ 0.62
CLN3-262ENST00000637699 C3orf70A6NLC5 250 aaPredicted RBP18.92■□□□□ 0.62
CLN3-262ENST00000637699 BUD23O43709 281 aaKnown RBP18.92■□□□□ 0.62
CLN3-262ENST00000637699 DPM1O60762 260 aa18.92■□□□□ 0.62
CLN3-262ENST00000637699 CEACAM4O75871 244 aa18.92■□□□□ 0.62
CLN3-262ENST00000637699 TMEM63AO94886 807 aa18.92■□□□□ 0.62
CLN3-262ENST00000637699 SPAM1P38567 509 aa18.92■□□□□ 0.62
CLN3-262ENST00000637699 PBX1P40424 430 aa18.92■□□□□ 0.62
CLN3-262ENST00000637699 PLEKHS1Q5SXH7 462 aa18.92■□□□□ 0.62
CLN3-262ENST00000637699 FNBP1LQ5T0N5 605 aa18.92■□□□□ 0.62
CLN3-262ENST00000637699 GPRC6AQ5T6X5 926 aa18.92■□□□□ 0.62
CLN3-262ENST00000637699 METRNLQ641Q3 311 aa18.92■□□□□ 0.62
CLN3-262ENST00000637699 RFX6Q8HWS3 928 aa18.92■□□□□ 0.62
CLN3-262ENST00000637699 BEND7Q8N7W2 519 aaPredicted RBP18.92■□□□□ 0.62
CLN3-262ENST00000637699 Q8NA96 180 aa18.92■□□□□ 0.62
CLN3-262ENST00000637699 OR8K5Q8NH50 307 aa18.92■□□□□ 0.62
CLN3-262ENST00000637699 C12orf66Q96MD2 445 aa18.92■□□□□ 0.62
CLN3-262ENST00000637699 NUDT9Q9BW91 350 aa18.92■□□□□ 0.62
CLN3-262ENST00000637699 TLR10Q9BXR5 811 aa18.92■□□□□ 0.62
CLN3-262ENST00000637699 WWP1Q9H0M0 922 aa18.92■□□□□ 0.62
CLN3-262ENST00000637699 TRABDQ9H4I3 376 aa18.92■□□□□ 0.62
CLN3-262ENST00000637699 IL17CQ9P0M4 197 aa18.92■□□□□ 0.62
CLN3-262ENST00000637699 FAM8A1Q9UBU6 413 aa18.92■□□□□ 0.62
CLN3-262ENST00000637699 LCMT1Q9UIC8 334 aa18.92■□□□□ 0.62
CLN3-262ENST00000637699 G3BP2Q9UN86 482 aaKnown RBP18.92■□□□□ 0.62
CLN3-262ENST00000637699 LUC7L2Q9Y383 392 aaKnown RBP18.92■□□□□ 0.62
CLN3-262ENST00000637699 PCDHGB7Q9Y5F8 929 aa18.92■□□□□ 0.62
CLN3-262ENST00000637699 DNMT3AQ9Y6K1 912 aaPredicted RBP18.92■□□□□ 0.62
CLN3-262ENST00000637699 SPTBP11277 2137 aa18.92■□□□□ 0.62
CLN3-262ENST00000637699 HIVEP3Q5T1R4 2406 aa18.92■□□□□ 0.62
CLN3-262ENST00000637699 GLYATL1P3A0A0U1RQE8 302 aa18.91■□□□□ 0.62
CLN3-262ENST00000637699 SYCE3A1L190 88 aa18.91■□□□□ 0.62
CLN3-262ENST00000637699 ZNF487B1APH4 448 aa18.91■□□□□ 0.62
CLN3-262ENST00000637699 MEN1O00255 615 aa18.91■□□□□ 0.62
CLN3-262ENST00000637699 PTPN3P26045 913 aa18.91■□□□□ 0.62
CLN3-262ENST00000637699 COL8A1P27658 744 aa18.91■□□□□ 0.62
CLN3-262ENST00000637699 CHRNA4P43681 627 aa18.91■□□□□ 0.62
CLN3-262ENST00000637699 KPNA2P52292 529 aaKnown RBP18.91■□□□□ 0.62
CLN3-262ENST00000637699 WNT3AP56704 352 aa18.91■□□□□ 0.62
CLN3-262ENST00000637699 GSDMDP57764 484 aa18.91■□□□□ 0.62
CLN3-262ENST00000637699 FANCCQ00597 558 aa18.91■□□□□ 0.62
CLN3-262ENST00000637699 SIRPB2Q5JXA9 342 aa18.91■□□□□ 0.62
CLN3-262ENST00000637699 ZDHHC20Q5W0Z9 365 aa18.91■□□□□ 0.62
CLN3-262ENST00000637699 DET1Q7L5Y6 550 aa18.91■□□□□ 0.62
CLN3-262ENST00000637699 DDHD1Q8NEL9 900 aa18.91■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms