RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 SLC30A1Q9Y6M5 507 aa18.87■□□□□ 0.61
CLN3-260ENST00000637578 IGSF10Q6WRI0 2623 aa18.87■□□□□ 0.61
CLN3-260ENST00000637578 MN1Q10571 1320 aaPredicted RBP18.87■□□□□ 0.61
CLN3-260ENST00000637578 IGLV3-16A0A075B6K0 115 aa18.86■□□□□ 0.61
CLN3-260ENST00000637578 MGAT4DA6NG13 374 aa18.86■□□□□ 0.61
CLN3-260ENST00000637578 B4E171 279 aa18.86■□□□□ 0.61
CLN3-260ENST00000637578 IQCJ-SCHIP1C9J366 451 aaPredicted RBP18.86■□□□□ 0.61
CLN3-260ENST00000637578 URI1O94763 535 aaPredicted RBP18.86■□□□□ 0.61
CLN3-260ENST00000637578 C9P02748 559 aa18.86■□□□□ 0.61
CLN3-260ENST00000637578 ZSCAN5DPP0CG00 497 aa18.86■□□□□ 0.61
CLN3-260ENST00000637578 ITGALP20701 1170 aa18.86■□□□□ 0.61
CLN3-260ENST00000637578 CD82P27701 267 aa18.86■□□□□ 0.61
CLN3-260ENST00000637578 AKT1P31749 480 aa18.86■□□□□ 0.61
CLN3-260ENST00000637578 CSTF2P33240 577 aaKnown RBP eCLIP18.86■□□□□ 0.61
CLN3-260ENST00000637578 FDFT1P37268 417 aa18.86■□□□□ 0.61
CLN3-260ENST00000637578 TSPAN7P41732 249 aa18.86■□□□□ 0.61
CLN3-260ENST00000637578 FNTAP49354 379 aa18.86■□□□□ 0.61
CLN3-260ENST00000637578 ARSDP51689 593 aa18.86■□□□□ 0.61
CLN3-260ENST00000637578 NFE2L1Q14494 772 aa18.86■□□□□ 0.61
CLN3-260ENST00000637578 DTX1Q86Y01 620 aa18.86■□□□□ 0.61
CLN3-260ENST00000637578 TRIM48Q8IWZ4 208 aa18.86■□□□□ 0.61
CLN3-260ENST00000637578 TAB3Q8N5C8 712 aaPredicted RBP18.86■□□□□ 0.61
CLN3-260ENST00000637578 BEND7Q8N7W2 519 aaPredicted RBP18.86■□□□□ 0.61
CLN3-260ENST00000637578 OR2L2Q8NH16 312 aa18.86■□□□□ 0.61
CLN3-260ENST00000637578 STYXQ8WUJ0 223 aa18.86■□□□□ 0.61
CLN3-260ENST00000637578 HEXDCQ8WVB3 486 aa18.86■□□□□ 0.61
CLN3-260ENST00000637578 DDX47Q9H0S4 455 aaKnown RBP18.86■□□□□ 0.61
CLN3-260ENST00000637578 CRLS1Q9UJA2 301 aa18.86■□□□□ 0.61
CLN3-260ENST00000637578 TEX51A0A1B0GUA7 166 aa18.85■□□□□ 0.61
CLN3-260ENST00000637578 CCL22O00626 93 aa18.85■□□□□ 0.61
CLN3-260ENST00000637578 LIPCP11150 499 aa18.85■□□□□ 0.61
CLN3-260ENST00000637578 CXADRP78310 365 aa18.85■□□□□ 0.61
CLN3-260ENST00000637578 SEMA5AQ13591 1074 aa18.85■□□□□ 0.61
CLN3-260ENST00000637578 POU6F1Q14863 301 aa18.85■□□□□ 0.61
CLN3-260ENST00000637578 TMEM164Q5U3C3 297 aa18.85■□□□□ 0.61
CLN3-260ENST00000637578 PLXDC1Q8IUK5 500 aa18.85■□□□□ 0.61
CLN3-260ENST00000637578 CXorf40BQ96DE9 158 aa18.85■□□□□ 0.61
CLN3-260ENST00000637578 CDKN2AIPNLQ96HQ2 116 aa18.85■□□□□ 0.61
CLN3-260ENST00000637578 DDA1Q9BW61 102 aa18.85■□□□□ 0.61
CLN3-260ENST00000637578 FAM96AQ9H5X1 160 aa18.85■□□□□ 0.61
CLN3-260ENST00000637578 CPNE5Q9HCH3 593 aa18.85■□□□□ 0.61
CLN3-260ENST00000637578 OCIAD1Q9NX40 245 aa18.85■□□□□ 0.61
CLN3-260ENST00000637578 CDC23Q9UJX2 597 aa18.85■□□□□ 0.61
CLN3-260ENST00000637578 EFSO43281 561 aa18.85■□□□□ 0.61
CLN3-260ENST00000637578 UBXN7O94888 489 aa18.85■□□□□ 0.61
CLN3-260ENST00000637578 ANKRD34CP0C6C1 535 aa18.85■□□□□ 0.61
CLN3-260ENST00000637578 MC4RP32245 332 aa18.85■□□□□ 0.61
CLN3-260ENST00000637578 RPL22P35268 128 aaKnown RBP18.85■□□□□ 0.61
CLN3-260ENST00000637578 HALP42357 657 aa18.85■□□□□ 0.61
CLN3-260ENST00000637578 VAC14Q08AM6 782 aa18.85■□□□□ 0.61
CLN3-260ENST00000637578 CDH17Q12864 832 aa18.85■□□□□ 0.61
CLN3-260ENST00000637578 GPR18Q14330 331 aa18.85■□□□□ 0.61
CLN3-260ENST00000637578 RPE65Q16518 533 aa18.85■□□□□ 0.61
CLN3-260ENST00000637578 DET1Q7L5Y6 550 aa18.85■□□□□ 0.61
CLN3-260ENST00000637578 OR52K1Q8NGK4 314 aa18.85■□□□□ 0.61
CLN3-260ENST00000637578 KIF18AQ8NI77 898 aa18.85■□□□□ 0.61
CLN3-260ENST00000637578 BBC3Q96PG8 261 aaPredicted RBP18.85■□□□□ 0.61
CLN3-260ENST00000637578 COPS8Q99627 209 aa18.85■□□□□ 0.61
CLN3-260ENST00000637578 PIH1D1Q9NWS0 290 aaKnown RBP18.85■□□□□ 0.61
CLN3-260ENST00000637578 PAK5Q9P286 719 aa18.85■□□□□ 0.61
CLN3-260ENST00000637578 ACSL5Q9ULC5 683 aa18.85■□□□□ 0.61
CLN3-260ENST00000637578 MGAQ8IWI9 3026 aa18.84■□□□□ 0.61
CLN3-260ENST00000637578 K7ENP7 123 aa18.84■□□□□ 0.61
CLN3-260ENST00000637578 RALBP11234 206 aa18.84■□□□□ 0.61
CLN3-260ENST00000637578 ATP1B2P14415 290 aaPredicted RBP18.84■□□□□ 0.61
CLN3-260ENST00000637578 ACRV1P26436 265 aa18.84■□□□□ 0.61
CLN3-260ENST00000637578 MAPK9P45984 424 aa18.84■□□□□ 0.61
CLN3-260ENST00000637578 PRLHRP49683 370 aa18.84■□□□□ 0.61
CLN3-260ENST00000637578 CDKN1CP49918 316 aaPredicted RBP18.84■□□□□ 0.61
CLN3-260ENST00000637578 TGIF1Q15583 401 aa18.84■□□□□ 0.61
CLN3-260ENST00000637578 TRIP13Q15645 432 aaPredicted RBP18.84■□□□□ 0.61
CLN3-260ENST00000637578 ZNF658BQ4V348 819 aaPredicted RBP18.84■□□□□ 0.61
CLN3-260ENST00000637578 INO80CQ6PI98 192 aaPredicted RBP18.84■□□□□ 0.61
CLN3-260ENST00000637578 ZFAND4Q86XD8 727 aa18.84■□□□□ 0.61
CLN3-260ENST00000637578 KLHL7Q8IXQ5 586 aa18.84■□□□□ 0.61
CLN3-260ENST00000637578 NAT14Q8WUY8 206 aa18.84■□□□□ 0.61
CLN3-260ENST00000637578 PMEPA1Q969W9 287 aa18.84■□□□□ 0.61
CLN3-260ENST00000637578 DCUN1D1Q96GG9 259 aa18.84■□□□□ 0.61
CLN3-260ENST00000637578 UBL7Q96S82 380 aaPredicted RBP18.84■□□□□ 0.61
CLN3-260ENST00000637578 CCNL2Q96S94 520 aaPredicted RBP18.84■□□□□ 0.61
CLN3-260ENST00000637578 RAB33BQ9H082 229 aa18.84■□□□□ 0.61
CLN3-260ENST00000637578 ZDHHC3Q9NYG2 299 aa18.84■□□□□ 0.61
CLN3-260ENST00000637578 EPHA6Q9UF33 1036 aa18.84■□□□□ 0.61
CLN3-260ENST00000637578 C17orf113A0A1B0GUU1 675 aa18.83■□□□□ 0.6
CLN3-260ENST00000637578 EFCAB7A8K855 629 aa18.83■□□□□ 0.6
CLN3-260ENST00000637578 A8MU76 341 aa18.83■□□□□ 0.6
CLN3-260ENST00000637578 CCDC188H7C350 402 aa18.83■□□□□ 0.6
CLN3-260ENST00000637578 TOX3O15405 576 aaPredicted RBP18.83■□□□□ 0.6
CLN3-260ENST00000637578 MC2RQ01718 297 aa18.83■□□□□ 0.6
CLN3-260ENST00000637578 SKIDA1Q1XH10 827 aa18.83■□□□□ 0.6
CLN3-260ENST00000637578 SNAP47Q5SQN1 464 aa18.83■□□□□ 0.6
CLN3-260ENST00000637578 MICALCLQ6ZW33 695 aa18.83■□□□□ 0.6
CLN3-260ENST00000637578 PIANPQ8IYJ0 282 aa18.83■□□□□ 0.6
CLN3-260ENST00000637578 SPATA4Q8NEY3 305 aa18.83■□□□□ 0.6
CLN3-260ENST00000637578 ART4Q93070 314 aa18.83■□□□□ 0.6
CLN3-260ENST00000637578 C9orf72Q96LT7 481 aa18.83■□□□□ 0.6
CLN3-260ENST00000637578 ASPSCR1Q9BZE9 553 aa18.83■□□□□ 0.6
CLN3-260ENST00000637578 ZMYND15Q9H091 742 aa18.83■□□□□ 0.6
CLN3-260ENST00000637578 CASS4Q9NQ75 786 aa18.83■□□□□ 0.6
CLN3-260ENST00000637578 FBXO8Q9NRD0 319 aa18.83■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms