RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 ENTPD2Q9Y5L3 495 aa20.3■□□□□ 0.84
CLN3-240ENST00000631023 MAD1L1Q9Y6D9 718 aa20.3■□□□□ 0.84
CLN3-240ENST00000631023 FRYQ5TBA9 3013 aa20.3■□□□□ 0.84
CLN3-240ENST00000631023 IGHV1OR21-1A0A087WYE8 117 aa20.29■□□□□ 0.84
CLN3-240ENST00000631023 NDC80O14777 642 aa20.29■□□□□ 0.84
CLN3-240ENST00000631023 PFDN6O15212 129 aa20.29■□□□□ 0.84
CLN3-240ENST00000631023 FTH1P02794 183 aa20.29■□□□□ 0.84
CLN3-240ENST00000631023 EPHA4P54764 986 aa20.29■□□□□ 0.84
CLN3-240ENST00000631023 SQSTM1Q13501 440 aa20.29■□□□□ 0.84
CLN3-240ENST00000631023 CLCA4Q14CN2 919 aa20.29■□□□□ 0.84
CLN3-240ENST00000631023 KIAA0930Q6ICG6 404 aaPredicted RBP20.29■□□□□ 0.84
CLN3-240ENST00000631023 MRNIPQ6NTE8 343 aa20.29■□□□□ 0.84
CLN3-240ENST00000631023 USP53Q70EK8 1073 aa20.29■□□□□ 0.84
CLN3-240ENST00000631023 ZNF761Q86XN6 746 aaPredicted RBP20.29■□□□□ 0.84
CLN3-240ENST00000631023 CNTNAP3BQ96NU0 1288 aa20.29■□□□□ 0.84
CLN3-240ENST00000631023 CNTNAP3Q9BZ76 1288 aa20.29■□□□□ 0.84
CLN3-240ENST00000631023 STRADBQ9C0K7 418 aa20.29■□□□□ 0.84
CLN3-240ENST00000631023 EPB41L1Q9H4G0 881 aa20.29■□□□□ 0.84
CLN3-240ENST00000631023 PSMD13Q9UNM6 376 aa20.29■□□□□ 0.84
CLN3-240ENST00000631023 AK5Q9Y6K8 562 aa20.29■□□□□ 0.84
CLN3-240ENST00000631023 IGF2RP11717 2491 aa20.29■□□□□ 0.84
CLN3-240ENST00000631023 OR52A4PA6NMU1 304 aa20.29■□□□□ 0.84
CLN3-240ENST00000631023 KIF2AO00139 706 aaPredicted RBP20.29■□□□□ 0.84
CLN3-240ENST00000631023 POLBP06746 335 aa20.29■□□□□ 0.84
CLN3-240ENST00000631023 SLC35G4P0C7Q5 338 aa20.29■□□□□ 0.84
CLN3-240ENST00000631023 CD1CP29017 333 aa20.29■□□□□ 0.84
CLN3-240ENST00000631023 INHBCP55103 352 aa20.29■□□□□ 0.84
CLN3-240ENST00000631023 DNAJC21Q5F1R6 531 aaKnown RBP20.29■□□□□ 0.84
CLN3-240ENST00000631023 TMEM26Q6ZUK4 368 aa20.29■□□□□ 0.84
CLN3-240ENST00000631023 SNF8Q96H20 258 aa20.29■□□□□ 0.84
CLN3-240ENST00000631023 TRIM51Q9BSJ1 452 aa20.29■□□□□ 0.84
CLN3-240ENST00000631023 TSSK1BQ9BXA7 367 aa20.29■□□□□ 0.84
CLN3-240ENST00000631023 ZMYND15Q9H091 742 aa20.29■□□□□ 0.84
CLN3-240ENST00000631023 RDH14Q9HBH5 336 aa20.29■□□□□ 0.84
CLN3-240ENST00000631023 PCDHB1Q9Y5F3 818 aa20.29■□□□□ 0.84
CLN3-240ENST00000631023 RPS6KL1Q9Y6S9 549 aa20.29■□□□□ 0.84
CLN3-240ENST00000631023 LILRA5A6NI73 299 aa20.28■□□□□ 0.84
CLN3-240ENST00000631023 EFCAB8A8MWE9 144 aa20.28■□□□□ 0.84
CLN3-240ENST00000631023 DUX1O43812 170 aa20.28■□□□□ 0.84
CLN3-240ENST00000631023 OR1I1O60431 355 aa20.28■□□□□ 0.84
CLN3-240ENST00000631023 NDUFS3O75489 264 aa20.28■□□□□ 0.84
CLN3-240ENST00000631023 PROS1P07225 676 aa20.28■□□□□ 0.84
CLN3-240ENST00000631023 CKAP4Q07065 602 aaKnown RBP20.28■□□□□ 0.84
CLN3-240ENST00000631023 RPA4Q13156 261 aa20.28■□□□□ 0.84
CLN3-240ENST00000631023 SEMA3AQ14563 771 aa20.28■□□□□ 0.84
CLN3-240ENST00000631023 RTP5Q14D33 572 aa20.28■□□□□ 0.84
CLN3-240ENST00000631023 RPE65Q16518 533 aa20.28■□□□□ 0.84
CLN3-240ENST00000631023 ANKRD20A4Q4UJ75 823 aa20.28■□□□□ 0.84
CLN3-240ENST00000631023 NKAIN2Q5VXU1 208 aa20.28■□□□□ 0.84
CLN3-240ENST00000631023 TMEM135Q86UB9 458 aa20.28■□□□□ 0.84
CLN3-240ENST00000631023 ZNF669Q96BR6 464 aaPredicted RBP20.28■□□□□ 0.84
CLN3-240ENST00000631023 ATXN7L3BQ96GX2 97 aa20.28■□□□□ 0.84
CLN3-240ENST00000631023 SIGLEC10Q96LC7 697 aa20.28■□□□□ 0.84
CLN3-240ENST00000631023 FOXP3Q9BZS1 431 aa20.28■□□□□ 0.84
CLN3-240ENST00000631023 WWP1Q9H0M0 922 aa20.28■□□□□ 0.84
CLN3-240ENST00000631023 CCDC86Q9H6F5 360 aaKnown RBP20.28■□□□□ 0.84
CLN3-240ENST00000631023 COG4Q9H9E3 785 aa20.28■□□□□ 0.84
CLN3-240ENST00000631023 SLC40A1Q9NP59 571 aa20.28■□□□□ 0.84
CLN3-240ENST00000631023 EIF2AK3Q9NZJ5 1116 aaKnown RBP20.28■□□□□ 0.84
CLN3-240ENST00000631023 MARCH4Q9P2E8 410 aaPredicted RBP20.28■□□□□ 0.84
CLN3-240ENST00000631023 PRSS21Q9Y6M0 314 aa20.28■□□□□ 0.84
CLN3-240ENST00000631023 URB1O60287 2271 aaKnown RBP20.27■□□□□ 0.84
CLN3-240ENST00000631023 FAM187AA6NFU0 413 aa20.27■□□□□ 0.84
CLN3-240ENST00000631023 URI1O94763 535 aaPredicted RBP20.27■□□□□ 0.84
CLN3-240ENST00000631023 USP1O94782 785 aa20.27■□□□□ 0.84
CLN3-240ENST00000631023 ARNTP27540 789 aa20.27■□□□□ 0.84
CLN3-240ENST00000631023 CCKBRP32239 447 aa20.27■□□□□ 0.84
CLN3-240ENST00000631023 PDX1P52945 283 aa20.27■□□□□ 0.84
CLN3-240ENST00000631023 LDB1Q86U70 411 aaPredicted RBP20.27■□□□□ 0.84
CLN3-240ENST00000631023 PDIK1LQ8N165 341 aa20.27■□□□□ 0.84
CLN3-240ENST00000631023 ZNF592Q92610 1267 aa20.27■□□□□ 0.84
CLN3-240ENST00000631023 STAMBPL1Q96FJ0 436 aa20.27■□□□□ 0.84
CLN3-240ENST00000631023 TCF12Q99081 682 aa20.27■□□□□ 0.84
CLN3-240ENST00000631023 NAT9Q9BTE0 207 aa20.27■□□□□ 0.84
CLN3-240ENST00000631023 TRIM31Q9BZY9 425 aa20.27■□□□□ 0.84
CLN3-240ENST00000631023 IMP3Q9NV31 184 aaKnown RBP20.27■□□□□ 0.84
CLN3-240ENST00000631023 CDC23Q9UJX2 597 aa20.27■□□□□ 0.84
CLN3-240ENST00000631023 APC2O95996 2303 aa20.27■□□□□ 0.84
CLN3-240ENST00000631023 CCDC187A0A096LP49 1063 aa20.26■□□□□ 0.83
CLN3-240ENST00000631023 PRMT5O14744 637 aaPredicted RBP20.26■□□□□ 0.83
CLN3-240ENST00000631023 LIN7AO14910 233 aaPredicted RBP20.26■□□□□ 0.83
CLN3-240ENST00000631023 MTHFD1P11586 935 aaKnown RBP20.26■□□□□ 0.83
CLN3-240ENST00000631023 ARCN1P48444 511 aaKnown RBP20.26■□□□□ 0.83
CLN3-240ENST00000631023 PLOD1Q02809 727 aaPredicted RBP20.26■□□□□ 0.83
CLN3-240ENST00000631023 ZFP36L1Q07352 338 aaKnown RBP20.26■□□□□ 0.83
CLN3-240ENST00000631023 C2orf54Q08AI8 447 aa20.26■□□□□ 0.83
CLN3-240ENST00000631023 EIF3IQ13347 325 aaKnown RBP20.26■□□□□ 0.83
CLN3-240ENST00000631023 RNF187Q5TA31 235 aaPredicted RBP20.26■□□□□ 0.83
CLN3-240ENST00000631023 NEPROQ6NW34 567 aa20.26■□□□□ 0.83
CLN3-240ENST00000631023 B3GNT8Q7Z7M8 397 aa20.26■□□□□ 0.83
CLN3-240ENST00000631023 LRRC6Q86X45 466 aa20.26■□□□□ 0.83
CLN3-240ENST00000631023 LSMEM2Q8N112 164 aa20.26■□□□□ 0.83
CLN3-240ENST00000631023 BBOF1Q8ND07 529 aa20.26■□□□□ 0.83
CLN3-240ENST00000631023 OR4D9Q8NGE8 314 aa20.26■□□□□ 0.83
CLN3-240ENST00000631023 GPR150Q8NGU9 434 aa20.26■□□□□ 0.83
CLN3-240ENST00000631023 WDR36Q8NI36 951 aaKnown RBP20.26■□□□□ 0.83
CLN3-240ENST00000631023 ELMO1Q92556 727 aa20.26■□□□□ 0.83
CLN3-240ENST00000631023 LIN37Q96GY3 246 aaPredicted RBP20.26■□□□□ 0.83
CLN3-240ENST00000631023 C12orf66Q96MD2 445 aa20.26■□□□□ 0.83
CLN3-240ENST00000631023 NUDT22Q9BRQ3 303 aa20.26■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms