RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 CLDN1O95832 211 aa2.44□□□□□ -2.02
SCN1A-208ENST00000625916 ICAM1P05362 532 aa2.44□□□□□ -2.02
SCN1A-208ENST00000625916 HNRNPA1P09651 372 aaKnown RBP eCLIP2.44□□□□□ -2.02
SCN1A-208ENST00000625916 ACADMP11310 421 aa2.44□□□□□ -2.02
SCN1A-208ENST00000625916 CBLP22681 906 aa2.44□□□□□ -2.02
SCN1A-208ENST00000625916 EIF3BP55884 814 aaKnown RBP2.44□□□□□ -2.02
SCN1A-208ENST00000625916 GPR17Q13304 367 aa2.44□□□□□ -2.02
SCN1A-208ENST00000625916 DRP2Q13474 957 aa2.44□□□□□ -2.02
SCN1A-208ENST00000625916 E2F5Q15329 346 aa2.44□□□□□ -2.02
SCN1A-208ENST00000625916 IL27RAQ6UWB1 636 aa2.44□□□□□ -2.02
SCN1A-208ENST00000625916 ADGRA1Q86SQ6 560 aa2.44□□□□□ -2.02
SCN1A-208ENST00000625916 LSMEM2Q8N112 164 aa2.44□□□□□ -2.02
SCN1A-208ENST00000625916 INTS9Q9NV88 658 aaKnown RBP2.44□□□□□ -2.02
SCN1A-208ENST00000625916 GPR83Q9NYM4 423 aa2.44□□□□□ -2.02
SCN1A-208ENST00000625916 ERAP1Q9NZ08 941 aa2.44□□□□□ -2.02
SCN1A-208ENST00000625916 NUDT4Q9NZJ9 180 aa2.44□□□□□ -2.02
SCN1A-208ENST00000625916 FLRT3Q9NZU0 649 aa2.44□□□□□ -2.02
SCN1A-208ENST00000625916 ABI3Q9P2A4 366 aa2.44□□□□□ -2.02
SCN1A-208ENST00000625916 ZDHHC2Q9UIJ5 367 aa2.44□□□□□ -2.02
SCN1A-208ENST00000625916 B3GALT5Q9Y2C3 310 aa2.44□□□□□ -2.02
SCN1A-208ENST00000625916 CAPN7Q9Y6W3 813 aa2.44□□□□□ -2.02
SCN1A-208ENST00000625916 DUX4L4P0CJ87 422 aa2.43□□□□□ -2.02
SCN1A-208ENST00000625916 HRH2P25021 359 aa2.43□□□□□ -2.02
SCN1A-208ENST00000625916 MAGEA11P43364 429 aa2.43□□□□□ -2.02
SCN1A-208ENST00000625916 F2RL1P55085 397 aa2.43□□□□□ -2.02
SCN1A-208ENST00000625916 HLA-BQ31612 363 aa2.43□□□□□ -2.02
SCN1A-208ENST00000625916 FAM69AQ5T7M9 428 aa2.43□□□□□ -2.02
SCN1A-208ENST00000625916 WLSQ5T9L3 541 aa2.43□□□□□ -2.02
SCN1A-208ENST00000625916 DENND5BQ6ZUT9 1274 aa2.43□□□□□ -2.02
SCN1A-208ENST00000625916 CRYBG2Q8N1P7 616 aa2.43□□□□□ -2.02
SCN1A-208ENST00000625916 SLC39A13Q96H72 371 aa2.43□□□□□ -2.02
SCN1A-208ENST00000625916 NSMCE3Q96MG7 304 aa2.43□□□□□ -2.02
SCN1A-208ENST00000625916 DGCR6LQ9BY27 220 aa2.43□□□□□ -2.02
SCN1A-208ENST00000625916 CWC15Q9P013 229 aaKnown RBP2.43□□□□□ -2.02
SCN1A-208ENST00000625916 RCC2Q9P258 522 aaKnown RBP2.43□□□□□ -2.02
SCN1A-208ENST00000625916 CNOT8Q9UFF9 292 aaKnown RBP2.43□□□□□ -2.02
SCN1A-208ENST00000625916 TBX20Q9UMR3 447 aa2.43□□□□□ -2.02
SCN1A-208ENST00000625916 TMEM184BQ9Y519 407 aaPredicted RBP2.43□□□□□ -2.02
SCN1A-208ENST00000625916 ASTN2O75129 1339 aaPredicted RBP2.42□□□□□ -2.02
SCN1A-208ENST00000625916 OR2M5A3KFT3 312 aa2.42□□□□□ -2.02
SCN1A-208ENST00000625916 H3BQ06 376 aaPredicted RBP2.42□□□□□ -2.02
SCN1A-208ENST00000625916 EIF3FO00303 357 aaPredicted RBP2.42□□□□□ -2.02
SCN1A-208ENST00000625916 PLPP2O43688 288 aa2.42□□□□□ -2.02
SCN1A-208ENST00000625916 GCNT3O95395 438 aa2.42□□□□□ -2.02
SCN1A-208ENST00000625916 H1F0P07305 194 aaKnown RBP2.42□□□□□ -2.02
SCN1A-208ENST00000625916 LIMK2P53671 638 aa2.42□□□□□ -2.02
SCN1A-208ENST00000625916 MRPS34P82930 218 aaKnown RBP2.42□□□□□ -2.02
SCN1A-208ENST00000625916 ZBED6P86452 979 aa2.42□□□□□ -2.02
SCN1A-208ENST00000625916 LGALS3BPQ08380 585 aa2.42□□□□□ -2.02
SCN1A-208ENST00000625916 PTP4A2Q12974 167 aa2.42□□□□□ -2.02
SCN1A-208ENST00000625916 TAF12Q16514 161 aa2.42□□□□□ -2.02
SCN1A-208ENST00000625916 CDC73Q6P1J9 531 aa2.42□□□□□ -2.02
SCN1A-208ENST00000625916 LRRTM4Q86VH4 590 aa2.42□□□□□ -2.02
SCN1A-208ENST00000625916 HPS6Q86YV9 775 aa2.42□□□□□ -2.02
SCN1A-208ENST00000625916 HACE1Q8IYU2 909 aa2.42□□□□□ -2.02
SCN1A-208ENST00000625916 L3MBTL4Q8NA19 623 aa2.42□□□□□ -2.02
SCN1A-208ENST00000625916 KBTBD8Q8NFY9 601 aa2.42□□□□□ -2.02
SCN1A-208ENST00000625916 ZFAND2BQ8WV99 257 aa2.42□□□□□ -2.02
SCN1A-208ENST00000625916 HPSE2Q8WWQ2 592 aa2.42□□□□□ -2.02
SCN1A-208ENST00000625916 MAELQ96JY0 434 aaKnown RBP2.42□□□□□ -2.02
SCN1A-208ENST00000625916 USP28Q96RU2 1077 aa2.42□□□□□ -2.02
SCN1A-208ENST00000625916 FUCA2Q9BTY2 467 aa2.42□□□□□ -2.02
SCN1A-208ENST00000625916 ISCA1Q9BUE6 129 aa2.42□□□□□ -2.02
SCN1A-208ENST00000625916 CHST11Q9NPF2 352 aa2.42□□□□□ -2.02
SCN1A-208ENST00000625916 MIOSQ9NXC5 875 aa2.42□□□□□ -2.02
SCN1A-208ENST00000625916 FBXW11Q9UKB1 542 aa2.42□□□□□ -2.02
SCN1A-208ENST00000625916 CCDC194A0A1B0GVG4 234 aa2.41□□□□□ -2.02
SCN1A-208ENST00000625916 MEX3AA1L020 520 aaKnown RBP2.41□□□□□ -2.02
SCN1A-208ENST00000625916 TMEM189-UBE2V1I3L0A0 370 aa2.41□□□□□ -2.02
SCN1A-208ENST00000625916 MAP2K7O14733 419 aa2.41□□□□□ -2.02
SCN1A-208ENST00000625916 ATP6V0E1O15342 81 aa2.41□□□□□ -2.02
SCN1A-208ENST00000625916 TNFSF14O43557 240 aa2.41□□□□□ -2.02
SCN1A-208ENST00000625916 ZNF217O75362 1048 aa2.41□□□□□ -2.02
SCN1A-208ENST00000625916 ZSCAN5DPP0CG00 497 aa2.41□□□□□ -2.02
SCN1A-208ENST00000625916 PIK3CAP42336 1068 aa2.41□□□□□ -2.02
SCN1A-208ENST00000625916 PSMC4P43686 418 aa2.41□□□□□ -2.02
SCN1A-208ENST00000625916 HUNKP57058 714 aa2.41□□□□□ -2.02
SCN1A-208ENST00000625916 KRTAP10-1P60331 282 aa2.41□□□□□ -2.02
SCN1A-208ENST00000625916 PPFIA1Q13136 1202 aa2.41□□□□□ -2.02
SCN1A-208ENST00000625916 UBE2V1Q13404 147 aa2.41□□□□□ -2.02
SCN1A-208ENST00000625916 FRG1Q14331 258 aaKnown RBP2.41□□□□□ -2.02
SCN1A-208ENST00000625916 C10orf62Q5T681 223 aaPredicted RBP2.41□□□□□ -2.02
SCN1A-208ENST00000625916 KLC3Q6P597 504 aa2.41□□□□□ -2.02
SCN1A-208ENST00000625916 CORO6Q6QEF8 472 aa2.41□□□□□ -2.02
SCN1A-208ENST00000625916 NKAPQ8N5F7 415 aaKnown RBP2.41□□□□□ -2.02
SCN1A-208ENST00000625916 GSDMBQ8TAX9 411 aa2.41□□□□□ -2.02
SCN1A-208ENST00000625916 GTF3AQ92664 365 aaKnown RBP2.41□□□□□ -2.02
SCN1A-208ENST00000625916 SMARCE1Q969G3 411 aa2.41□□□□□ -2.02
SCN1A-208ENST00000625916 MMABQ96EY8 250 aaPredicted RBP2.41□□□□□ -2.02
SCN1A-208ENST00000625916 EGLN2Q96KS0 407 aa2.41□□□□□ -2.02
SCN1A-208ENST00000625916 RPP25Q9BUL9 199 aaKnown RBP2.41□□□□□ -2.02
SCN1A-208ENST00000625916 PANK3Q9H999 370 aa2.41□□□□□ -2.02
SCN1A-208ENST00000625916 EPB41L5Q9HCM4 733 aa2.41□□□□□ -2.02
SCN1A-208ENST00000625916 RANGRFQ9HD47 186 aaPredicted RBP2.41□□□□□ -2.02
SCN1A-208ENST00000625916 TAB2Q9NYJ8 693 aa2.41□□□□□ -2.02
SCN1A-208ENST00000625916 MUTYHQ9UIF7 546 aa2.41□□□□□ -2.02
SCN1A-208ENST00000625916 WDR37Q9Y2I8 494 aa2.41□□□□□ -2.02
SCN1A-208ENST00000625916 R3HDM2Q9Y2K5 976 aaKnown RBP2.41□□□□□ -2.02
SCN1A-208ENST00000625916 ABCA7Q8IZY2 2146 aa2.41□□□□□ -2.02
SCN1A-208ENST00000625916 ATRXP46100 2492 aa2.4□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms