RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 SUV39H2Q9H5I1 410 aa10.47□□□□□ -0.73
CUX1-221ENST00000622516 TMEM181Q9P2C4 612 aa10.47□□□□□ -0.73
CUX1-221ENST00000622516 ZNHIT2Q9UHR6 403 aa10.47□□□□□ -0.73
CUX1-221ENST00000622516 SNX13Q9Y5W8 968 aa10.47□□□□□ -0.73
CUX1-221ENST00000622516 WNT6Q9Y6F9 365 aa10.47□□□□□ -0.73
CUX1-221ENST00000622516 DENND4CQ5VZ89 1909 aa10.46□□□□□ -0.73
CUX1-221ENST00000622516 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP10.46□□□□□ -0.73
CUX1-221ENST00000622516 TAPBPO15533 448 aa10.46□□□□□ -0.73
CUX1-221ENST00000622516 MLYCDO95822 493 aa10.46□□□□□ -0.73
CUX1-221ENST00000622516 CHEK2O96017 543 aa10.46□□□□□ -0.73
CUX1-221ENST00000622516 GLUD1P00367 558 aa10.46□□□□□ -0.73
CUX1-221ENST00000622516 IL12AP29459 219 aa10.46□□□□□ -0.73
CUX1-221ENST00000622516 IRS1P35568 1242 aa10.46□□□□□ -0.73
CUX1-221ENST00000622516 ACADVLP49748 655 aa10.46□□□□□ -0.73
CUX1-221ENST00000622516 HSPA14Q0VDF9 509 aa10.46□□□□□ -0.73
CUX1-221ENST00000622516 MED21Q13503 144 aa10.46□□□□□ -0.73
CUX1-221ENST00000622516 GTF2H2Q13888 395 aa10.46□□□□□ -0.73
CUX1-221ENST00000622516 MAP7D1Q3KQU3 841 aa10.46□□□□□ -0.73
CUX1-221ENST00000622516 C6orf136Q5SQH8 315 aa10.46□□□□□ -0.73
CUX1-221ENST00000622516 ZNF648Q5T619 568 aaPredicted RBP10.46□□□□□ -0.73
CUX1-221ENST00000622516 OGFRL1Q5TC84 451 aaPredicted RBP10.46□□□□□ -0.73
CUX1-221ENST00000622516 C1orf53Q5VUE5 145 aa10.46□□□□□ -0.73
CUX1-221ENST00000622516 GTF2H2CQ6P1K8 395 aa10.46□□□□□ -0.73
CUX1-221ENST00000622516 C22orf39Q6P5X5 142 aa10.46□□□□□ -0.73
CUX1-221ENST00000622516 SPPL2CQ8IUH8 684 aa10.46□□□□□ -0.73
CUX1-221ENST00000622516 SFRP1Q8N474 314 aa10.46□□□□□ -0.73
CUX1-221ENST00000622516 TMEM199Q8N511 208 aa10.46□□□□□ -0.73
CUX1-221ENST00000622516 PPP2R3CQ969Q6 453 aa10.46□□□□□ -0.73
CUX1-221ENST00000622516 SLCO4A1Q96BD0 722 aa10.46□□□□□ -0.73
CUX1-221ENST00000622516 EPS15L1Q9UBC2 864 aa10.46□□□□□ -0.73
CUX1-221ENST00000622516 CD300AQ9UGN4 299 aa10.46□□□□□ -0.73
CUX1-221ENST00000622516 CIDEBQ9UHD4 219 aa10.46□□□□□ -0.73
CUX1-221ENST00000622516 AURKCQ9UQB9 309 aa10.46□□□□□ -0.73
CUX1-221ENST00000622516 ASB3Q9Y575 518 aa10.46□□□□□ -0.73
CUX1-221ENST00000622516 CROCCQ5TZA2 2017 aa10.46□□□□□ -0.74
CUX1-221ENST00000622516 MYOCOSA0A1B0GUC4 107 aa10.46□□□□□ -0.74
CUX1-221ENST00000622516 FXYD1O00168 92 aa10.46□□□□□ -0.74
CUX1-221ENST00000622516 TYRP14679 529 aa10.46□□□□□ -0.74
CUX1-221ENST00000622516 UQCRBP14927 111 aa10.46□□□□□ -0.74
CUX1-221ENST00000622516 PSMC3P17980 439 aa10.46□□□□□ -0.74
CUX1-221ENST00000622516 SPAM1P38567 509 aa10.46□□□□□ -0.74
CUX1-221ENST00000622516 ADARP55265 1226 aaKnown RBP10.46□□□□□ -0.74
CUX1-221ENST00000622516 SNRPD1P62314 119 aaKnown RBP10.46□□□□□ -0.74
CUX1-221ENST00000622516 HMGCS1Q01581 520 aa10.46□□□□□ -0.74
CUX1-221ENST00000622516 ARHGEF7Q14155 803 aa10.46□□□□□ -0.74
CUX1-221ENST00000622516 ADGRE1Q14246 886 aa10.46□□□□□ -0.74
CUX1-221ENST00000622516 TLR1Q15399 786 aa10.46□□□□□ -0.74
CUX1-221ENST00000622516 RFTN2Q52LD8 501 aaPredicted RBP10.46□□□□□ -0.74
CUX1-221ENST00000622516 LY6G5CQ5SRR4 150 aa10.46□□□□□ -0.74
CUX1-221ENST00000622516 TMEM215Q68D42 235 aa10.46□□□□□ -0.74
CUX1-221ENST00000622516 TXNDC11Q6PKC3 985 aa10.46□□□□□ -0.74
CUX1-221ENST00000622516 CERS6Q6ZMG9 384 aa10.46□□□□□ -0.74
CUX1-221ENST00000622516 RBM23Q86U06 439 aaKnown RBP10.46□□□□□ -0.74
CUX1-221ENST00000622516 SLC15A3Q8IY34 581 aa10.46□□□□□ -0.74
CUX1-221ENST00000622516 MYO1HQ8N1T3 1032 aa10.46□□□□□ -0.74
CUX1-221ENST00000622516 BEND7Q8N7W2 519 aaPredicted RBP10.46□□□□□ -0.74
CUX1-221ENST00000622516 PCYOX1LQ8NBM8 494 aa10.46□□□□□ -0.74
CUX1-221ENST00000622516 PPWD1Q96BP3 646 aaKnown RBP10.46□□□□□ -0.74
CUX1-221ENST00000622516 LRRC58Q96CX6 371 aa10.46□□□□□ -0.74
CUX1-221ENST00000622516 CMTM6Q9NX76 183 aa10.46□□□□□ -0.74
CUX1-221ENST00000622516 GNPTGQ9UJJ9 305 aa10.46□□□□□ -0.74
CUX1-221ENST00000622516 APPL1Q9UKG1 709 aa10.46□□□□□ -0.74
CUX1-221ENST00000622516 AP4S1Q9Y587 144 aa10.46□□□□□ -0.74
CUX1-221ENST00000622516 V9GYQ6 96 aa10.46□□□□□ -0.74
CUX1-221ENST00000622516 FAM149AA5PLN7 773 aa10.45□□□□□ -0.74
CUX1-221ENST00000622516 MAGEA13PA6NCF6 341 aa10.45□□□□□ -0.74
CUX1-221ENST00000622516 ASPDHA6ND91 283 aa10.45□□□□□ -0.74
CUX1-221ENST00000622516 CASQ2O14958 399 aaPredicted RBP10.45□□□□□ -0.74
CUX1-221ENST00000622516 TIPRLO75663 272 aa10.45□□□□□ -0.74
CUX1-221ENST00000622516 MTHFD1P11586 935 aaKnown RBP10.45□□□□□ -0.74
CUX1-221ENST00000622516 IDO1P14902 403 aa10.45□□□□□ -0.74
CUX1-221ENST00000622516 NCK1P16333 377 aa10.45□□□□□ -0.74
CUX1-221ENST00000622516 ATP6V1B2P21281 511 aa10.45□□□□□ -0.74
CUX1-221ENST00000622516 SLC6A2P23975 617 aa10.45□□□□□ -0.74
CUX1-221ENST00000622516 RFC2P35250 354 aa10.45□□□□□ -0.74
CUX1-221ENST00000622516 PEX19P40855 299 aa10.45□□□□□ -0.74
CUX1-221ENST00000622516 B4GALNT1Q00973 533 aa10.45□□□□□ -0.74
CUX1-221ENST00000622516 C6orf52Q5T4I8 152 aa10.45□□□□□ -0.74
CUX1-221ENST00000622516 OR52E8Q6IFG1 317 aa10.45□□□□□ -0.74
CUX1-221ENST00000622516 BLOC1S3Q6QNY0 202 aa10.45□□□□□ -0.74
CUX1-221ENST00000622516 CCDC149Q6ZUS6 474 aa10.45□□□□□ -0.74
CUX1-221ENST00000622516 NXPE1Q8N323 547 aa10.45□□□□□ -0.74
CUX1-221ENST00000622516 CPXM2Q8N436 756 aa10.45□□□□□ -0.74
CUX1-221ENST00000622516 ZBTB2Q8N680 514 aa10.45□□□□□ -0.74
CUX1-221ENST00000622516 SCRN2Q96FV2 425 aa10.45□□□□□ -0.74
CUX1-221ENST00000622516 BRD9Q9H8M2 597 aa10.45□□□□□ -0.74
CUX1-221ENST00000622516 INTS7Q9NVH2 962 aaKnown RBP10.45□□□□□ -0.74
CUX1-221ENST00000622516 C6orf203Q9P0P8 240 aaPredicted RBP10.45□□□□□ -0.74
CUX1-221ENST00000622516 B4GALT6Q9UBX8 382 aa10.45□□□□□ -0.74
CUX1-221ENST00000622516 PCDHB1Q9Y5F3 818 aa10.45□□□□□ -0.74
CUX1-221ENST00000622516 PTPRSQ13332 1948 aa10.45□□□□□ -0.74
CUX1-221ENST00000622516 GOLGA4Q13439 2230 aaKnown RBP10.45□□□□□ -0.74
CUX1-221ENST00000622516 KIAA1671Q9BY89 1806 aa10.45□□□□□ -0.74
CUX1-221ENST00000622516 PRSS51A0A1B0GVH4 220 aa10.45□□□□□ -0.74
CUX1-221ENST00000622516 MOSPD3O75425 235 aa10.45□□□□□ -0.74
CUX1-221ENST00000622516 SLC22A3O75751 556 aa10.45□□□□□ -0.74
CUX1-221ENST00000622516 S100BP04271 92 aaPredicted RBP10.45□□□□□ -0.74
CUX1-221ENST00000622516 G6PDP11413 515 aa10.45□□□□□ -0.74
CUX1-221ENST00000622516 EPCAMP16422 314 aa10.45□□□□□ -0.74
CUX1-221ENST00000622516 MAGEA8P43361 318 aa10.45□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms