RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 FAR1Q8WVX9 515 aa13.84□□□□□ -0.19
CPSF1-212ENST00000616140 AIF1LQ9BQI0 150 aa13.84□□□□□ -0.19
CPSF1-212ENST00000616140 NUSAP1Q9BXS6 441 aaKnown RBP13.84□□□□□ -0.19
CPSF1-212ENST00000616140 TRIM39Q9HCM9 518 aa13.84□□□□□ -0.19
CPSF1-212ENST00000616140 IDH3BO43837 385 aa13.84□□□□□ -0.19
CPSF1-212ENST00000616140 IMPDH1P20839 514 aa13.84□□□□□ -0.19
CPSF1-212ENST00000616140 RPS14P62263 151 aaKnown RBP13.84□□□□□ -0.19
CPSF1-212ENST00000616140 ZBTB6Q15916 424 aa13.84□□□□□ -0.19
CPSF1-212ENST00000616140 RFTN2Q52LD8 501 aaPredicted RBP13.84□□□□□ -0.19
CPSF1-212ENST00000616140 SLC9A4Q6AI14 798 aa13.84□□□□□ -0.19
CPSF1-212ENST00000616140 SULT1C3Q6IMI6 304 aa13.84□□□□□ -0.19
CPSF1-212ENST00000616140 PARGQ86W56 976 aa13.84□□□□□ -0.19
CPSF1-212ENST00000616140 ZDHHC21Q8IVQ6 265 aa13.84□□□□□ -0.19
CPSF1-212ENST00000616140 IGDCC3Q8IVU1 814 aa13.84□□□□□ -0.19
CPSF1-212ENST00000616140 FUBP3Q96I24 572 aaKnown RBP eCLIP13.84□□□□□ -0.19
CPSF1-212ENST00000616140 NSMCE3Q96MG7 304 aa13.84□□□□□ -0.19
CPSF1-212ENST00000616140 DEC1Q9P2X7 70 aa13.84□□□□□ -0.19
CPSF1-212ENST00000616140 ZNF510Q9Y2H8 683 aa13.84□□□□□ -0.19
CPSF1-212ENST00000616140 TTC24A2A3L6 582 aaPredicted RBP13.84□□□□□ -0.19
CPSF1-212ENST00000616140 SLC22A2O15244 555 aa13.84□□□□□ -0.19
CPSF1-212ENST00000616140 PRPS2P11908 318 aa13.84□□□□□ -0.19
CPSF1-212ENST00000616140 TAS2R41P59536 307 aa13.84□□□□□ -0.19
CPSF1-212ENST00000616140 CREMQ03060 361 aa13.84□□□□□ -0.19
CPSF1-212ENST00000616140 ELP6Q0PNE2 266 aa13.84□□□□□ -0.19
CPSF1-212ENST00000616140 CBX2Q14781 532 aaPredicted RBP13.84□□□□□ -0.19
CPSF1-212ENST00000616140 OR10G6Q8NH81 332 aa13.84□□□□□ -0.19
CPSF1-212ENST00000616140 HM13Q8TCT9 377 aa13.84□□□□□ -0.19
CPSF1-212ENST00000616140 PRDM8Q9NQV8 689 aa13.84□□□□□ -0.19
CPSF1-212ENST00000616140 PSAT1Q9Y617 370 aa13.84□□□□□ -0.19
CPSF1-212ENST00000616140 ZNF780BQ9Y6R6 833 aa13.84□□□□□ -0.19
CPSF1-212ENST00000616140 DUOX1Q9NRD9 1551 aa13.84□□□□□ -0.19
CPSF1-212ENST00000616140 ANKRD12Q6UB98 2062 aa13.84□□□□□ -0.19
CPSF1-212ENST00000616140 PDLIM1O00151 329 aa13.84□□□□□ -0.19
CPSF1-212ENST00000616140 CASKO14936 926 aa13.84□□□□□ -0.19
CPSF1-212ENST00000616140 IFNW1P05000 195 aa13.84□□□□□ -0.19
CPSF1-212ENST00000616140 PSMA1P25786 263 aaKnown RBP13.84□□□□□ -0.19
CPSF1-212ENST00000616140 HTR1BP28222 390 aa13.84□□□□□ -0.19
CPSF1-212ENST00000616140 HERVK_113P63132 956 aa13.84□□□□□ -0.19
CPSF1-212ENST00000616140 CARTPTQ16568 116 aa13.84□□□□□ -0.19
CPSF1-212ENST00000616140 ZDHHC20Q5W0Z9 365 aa13.84□□□□□ -0.19
CPSF1-212ENST00000616140 FAM180AQ6UWF9 173 aa13.84□□□□□ -0.19
CPSF1-212ENST00000616140 KCTD8Q6ZWB6 473 aa13.84□□□□□ -0.19
CPSF1-212ENST00000616140 CDH24Q86UP0 819 aa13.84□□□□□ -0.19
CPSF1-212ENST00000616140 P2RY8Q86VZ1 359 aa13.84□□□□□ -0.19
CPSF1-212ENST00000616140 C7orf43Q8WVR3 580 aa13.84□□□□□ -0.19
CPSF1-212ENST00000616140 HPS1Q92902 700 aa13.84□□□□□ -0.19
CPSF1-212ENST00000616140 CDKN2AIPNLQ96HQ2 116 aa13.84□□□□□ -0.19
CPSF1-212ENST00000616140 CHCHD6Q9BRQ6 235 aa13.84□□□□□ -0.19
CPSF1-212ENST00000616140 ERVK-6Q9BXR3 956 aa13.84□□□□□ -0.19
CPSF1-212ENST00000616140 ZDHHC2Q9UIJ5 367 aa13.84□□□□□ -0.19
CPSF1-212ENST00000616140 SLC27A6Q9Y2P4 619 aa13.84□□□□□ -0.19
CPSF1-212ENST00000616140 TESMINQ9Y4I5 508 aa13.84□□□□□ -0.19
CPSF1-212ENST00000616140 GSAPA4D1B5 854 aa13.83□□□□□ -0.2
CPSF1-212ENST00000616140 URADA6NGE7 173 aa13.83□□□□□ -0.2
CPSF1-212ENST00000616140 CHURC1-FNTBB4DL54 471 aa13.83□□□□□ -0.2
CPSF1-212ENST00000616140 CXCR6O00574 342 aa13.83□□□□□ -0.2
CPSF1-212ENST00000616140 POU2F1P14859 743 aa13.83□□□□□ -0.2
CPSF1-212ENST00000616140 PRKCHP24723 683 aa13.83□□□□□ -0.2
CPSF1-212ENST00000616140 ALDH4A1P30038 563 aa13.83□□□□□ -0.2
CPSF1-212ENST00000616140 STAT5AP42229 794 aa13.83□□□□□ -0.2
CPSF1-212ENST00000616140 HMGCS1Q01581 520 aa13.83□□□□□ -0.2
CPSF1-212ENST00000616140 PLET1Q6UQ28 207 aa13.83□□□□□ -0.2
CPSF1-212ENST00000616140 CFAP206Q8IYR0 622 aa13.83□□□□□ -0.2
CPSF1-212ENST00000616140 GALNT15Q8N3T1 639 aa13.83□□□□□ -0.2
CPSF1-212ENST00000616140 OR9I1Q8NGQ6 314 aa13.83□□□□□ -0.2
CPSF1-212ENST00000616140 RAD51AP1Q96B01 352 aa13.83□□□□□ -0.2
CPSF1-212ENST00000616140 FEM1CQ96JP0 617 aa13.83□□□□□ -0.2
CPSF1-212ENST00000616140 CDK15Q96Q40 435 aa13.83□□□□□ -0.2
CPSF1-212ENST00000616140 PEBP4Q96S96 227 aa13.83□□□□□ -0.2
CPSF1-212ENST00000616140 MTERF1Q99551 399 aaKnown RBP13.83□□□□□ -0.2
CPSF1-212ENST00000616140 LMAN2LQ9H0V9 348 aa13.83□□□□□ -0.2
CPSF1-212ENST00000616140 C3orf14Q9HBI5 128 aa13.83□□□□□ -0.2
CPSF1-212ENST00000616140 TRNAU1APQ9NX07 287 aaKnown RBP13.83□□□□□ -0.2
CPSF1-212ENST00000616140 OAZ3Q9UMX2 235 aa13.83□□□□□ -0.2
CPSF1-212ENST00000616140 ZW10O43264 779 aa13.83□□□□□ -0.2
CPSF1-212ENST00000616140 PLOD3O60568 738 aa13.83□□□□□ -0.2
CPSF1-212ENST00000616140 HIST1H2ABP04908 130 aa13.83□□□□□ -0.2
CPSF1-212ENST00000616140 AOC1P19801 751 aa13.83□□□□□ -0.2
CPSF1-212ENST00000616140 ERVK-8P63133 956 aa13.83□□□□□ -0.2
CPSF1-212ENST00000616140 SF1Q15637 639 aaKnown RBP13.83□□□□□ -0.2
CPSF1-212ENST00000616140 PLA2G4EQ3MJ16 856 aa13.83□□□□□ -0.2
CPSF1-212ENST00000616140 SPRYD7Q5W111 196 aa13.83□□□□□ -0.2
CPSF1-212ENST00000616140 FBXL22Q6P050 247 aa13.83□□□□□ -0.2
CPSF1-212ENST00000616140 HIST3H2AQ7L7L0 130 aa13.83□□□□□ -0.2
CPSF1-212ENST00000616140 CTU1Q7Z7A3 348 aaKnown RBP13.83□□□□□ -0.2
CPSF1-212ENST00000616140 RBM23Q86U06 439 aaKnown RBP13.83□□□□□ -0.2
CPSF1-212ENST00000616140 PQLC3Q8N755 202 aa13.83□□□□□ -0.2
CPSF1-212ENST00000616140 ADAMTS15Q8TE58 950 aa13.83□□□□□ -0.2
CPSF1-212ENST00000616140 AP3S1Q92572 193 aa13.83□□□□□ -0.2
CPSF1-212ENST00000616140 HIST1H2ACQ93077 130 aa13.83□□□□□ -0.2
CPSF1-212ENST00000616140 EXOSC8Q96B26 276 aaKnown RBP13.83□□□□□ -0.2
CPSF1-212ENST00000616140 ASB9Q96DX5 294 aa13.83□□□□□ -0.2
CPSF1-212ENST00000616140 AHCYL2Q96HN2 611 aaKnown RBP13.83□□□□□ -0.2
CPSF1-212ENST00000616140 LRRC3Q9BY71 257 aa13.83□□□□□ -0.2
CPSF1-212ENST00000616140 TFB2MQ9H5Q4 396 aaKnown RBP13.83□□□□□ -0.2
CPSF1-212ENST00000616140 AKTIPQ9H8T0 292 aa13.83□□□□□ -0.2
CPSF1-212ENST00000616140 AMBNQ9NP70 447 aa13.83□□□□□ -0.2
CPSF1-212ENST00000616140 INTS10Q9NVR2 710 aaKnown RBP13.83□□□□□ -0.2
CPSF1-212ENST00000616140 GALPQ9UBC7 116 aa13.83□□□□□ -0.2
CPSF1-212ENST00000616140 SLC2A6Q9UGQ3 507 aa13.83□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms