RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 P2RY12Q9H244 342 aa16.24■□□□□ 0.19
CCDC28A-202ENST00000611852 FAM8A1Q9UBU6 413 aa16.24■□□□□ 0.19
CCDC28A-202ENST00000611852 WDR37Q9Y2I8 494 aa16.24■□□□□ 0.19
CCDC28A-202ENST00000611852 KIR2DS5A0A0G2JLQ3 304 aa16.23■□□□□ 0.19
CCDC28A-202ENST00000611852 A0A0G2JNG1 304 aa16.23■□□□□ 0.19
CCDC28A-202ENST00000611852 OR5K4A6NMS3 321 aa16.23■□□□□ 0.19
CCDC28A-202ENST00000611852 KIR2DS3K7RE56 304 aa16.23■□□□□ 0.19
CCDC28A-202ENST00000611852 PPM1DO15297 605 aa16.23■□□□□ 0.19
CCDC28A-202ENST00000611852 ADRB1P08588 477 aa16.23■□□□□ 0.19
CCDC28A-202ENST00000611852 GSTM1P09488 218 aa16.23■□□□□ 0.19
CCDC28A-202ENST00000611852 OR56A5P0C7T3 313 aa16.23■□□□□ 0.19
CCDC28A-202ENST00000611852 PNLIPP16233 465 aa16.23■□□□□ 0.19
CCDC28A-202ENST00000611852 FASLGP48023 281 aa16.23■□□□□ 0.19
CCDC28A-202ENST00000611852 E2F1Q01094 437 aa16.23■□□□□ 0.19
CCDC28A-202ENST00000611852 GSTM4Q03013 218 aa16.23■□□□□ 0.19
CCDC28A-202ENST00000611852 KIR2DS5Q14953 304 aa16.23■□□□□ 0.19
CCDC28A-202ENST00000611852 HSP90AA5PQ58FG0 334 aa16.23■□□□□ 0.19
CCDC28A-202ENST00000611852 RNF187Q5TA31 235 aaPredicted RBP16.23■□□□□ 0.19
CCDC28A-202ENST00000611852 STEAP4Q687X5 459 aa16.23■□□□□ 0.19
CCDC28A-202ENST00000611852 ZNF438Q7Z4V0 828 aa16.23■□□□□ 0.19
CCDC28A-202ENST00000611852 RAB44Q7Z6P3 723 aaPredicted RBP16.23■□□□□ 0.19
CCDC28A-202ENST00000611852 KCNMB4Q86W47 210 aa16.23■□□□□ 0.19
CCDC28A-202ENST00000611852 LMNTD2Q8IXW0 634 aa16.23■□□□□ 0.19
CCDC28A-202ENST00000611852 CFAP206Q8IYR0 622 aa16.23■□□□□ 0.19
CCDC28A-202ENST00000611852 ZBED8Q8IZ13 594 aa16.23■□□□□ 0.19
CCDC28A-202ENST00000611852 FBXO36Q8NEA4 188 aa16.23■□□□□ 0.19
CCDC28A-202ENST00000611852 CALML6Q8TD86 181 aa16.23■□□□□ 0.19
CCDC28A-202ENST00000611852 LPGAT1Q92604 370 aa16.23■□□□□ 0.19
CCDC28A-202ENST00000611852 CFAP36Q96G28 342 aa16.23■□□□□ 0.19
CCDC28A-202ENST00000611852 CCDC3Q9BQI4 270 aa16.23■□□□□ 0.19
CCDC28A-202ENST00000611852 EPB41L5Q9HCM4 733 aa16.23■□□□□ 0.19
CCDC28A-202ENST00000611852 ACSL5Q9ULC5 683 aa16.23■□□□□ 0.19
CCDC28A-202ENST00000611852 PFDN6O15212 129 aa16.22■□□□□ 0.19
CCDC28A-202ENST00000611852 EIF3HO15372 352 aaKnown RBP eCLIP16.22■□□□□ 0.19
CCDC28A-202ENST00000611852 FTH1P02794 183 aa16.22■□□□□ 0.19
CCDC28A-202ENST00000611852 XRCC1P18887 633 aaPredicted RBP16.22■□□□□ 0.19
CCDC28A-202ENST00000611852 RPS3P23396 243 aaKnown RBP eCLIP16.22■□□□□ 0.19
CCDC28A-202ENST00000611852 CTBP1Q13363 440 aa16.22■□□□□ 0.19
CCDC28A-202ENST00000611852 CLCA4Q14CN2 919 aa16.22■□□□□ 0.19
CCDC28A-202ENST00000611852 CHCHD2P9Q5T1J5 151 aaPredicted RBP16.22■□□□□ 0.19
CCDC28A-202ENST00000611852 SLC9B2Q86UD5 537 aa16.22■□□□□ 0.19
CCDC28A-202ENST00000611852 LRRC6Q86X45 466 aa16.22■□□□□ 0.19
CCDC28A-202ENST00000611852 DENND6AQ8IWF6 608 aa16.22■□□□□ 0.19
CCDC28A-202ENST00000611852 BIRC8Q96P09 236 aa16.22■□□□□ 0.19
CCDC28A-202ENST00000611852 FAM167BQ9BTA0 163 aa16.22■□□□□ 0.19
CCDC28A-202ENST00000611852 COG4Q9H9E3 785 aa16.22■□□□□ 0.19
CCDC28A-202ENST00000611852 SARS2Q9NP81 518 aaKnown RBP16.22■□□□□ 0.19
CCDC28A-202ENST00000611852 ZDHHC18Q9NUE0 388 aa16.22■□□□□ 0.19
CCDC28A-202ENST00000611852 ZNF624Q9P2J8 865 aaPredicted RBP16.22■□□□□ 0.19
CCDC28A-202ENST00000611852 PSMD13Q9UNM6 376 aa16.22■□□□□ 0.19
CCDC28A-202ENST00000611852 UBA6A0AVT1 1052 aaPredicted RBP16.21■□□□□ 0.19
CCDC28A-202ENST00000611852 OR52A4PA6NMU1 304 aa16.21■□□□□ 0.19
CCDC28A-202ENST00000611852 RHPN2P1A8MT19 583 aa16.21■□□□□ 0.19
CCDC28A-202ENST00000611852 F8W8V4 182 aa16.21■□□□□ 0.19
CCDC28A-202ENST00000611852 CASC3O15234 703 aaKnown RBP16.21■□□□□ 0.19
CCDC28A-202ENST00000611852 OPA1O60313 960 aa16.21■□□□□ 0.19
CCDC28A-202ENST00000611852 S1PR4O95977 384 aa16.21■□□□□ 0.19
CCDC28A-202ENST00000611852 ERVK-10P10266 1014 aa16.21■□□□□ 0.19
CCDC28A-202ENST00000611852 SLC1A2P43004 574 aa16.21■□□□□ 0.19
CCDC28A-202ENST00000611852 ADARP55265 1226 aaKnown RBP16.21■□□□□ 0.19
CCDC28A-202ENST00000611852 UBE2IP63279 158 aaKnown RBP16.21■□□□□ 0.19
CCDC28A-202ENST00000611852 INSM1Q01101 510 aaPredicted RBP16.21■□□□□ 0.19
CCDC28A-202ENST00000611852 HHEXQ03014 270 aa16.21■□□□□ 0.19
CCDC28A-202ENST00000611852 FOXC1Q12948 553 aa16.21■□□□□ 0.19
CCDC28A-202ENST00000611852 BIRC2Q13490 618 aa16.21■□□□□ 0.19
CCDC28A-202ENST00000611852 NR1D2Q14995 579 aa16.21■□□□□ 0.19
CCDC28A-202ENST00000611852 ZNF789Q5FWF6 425 aa16.21■□□□□ 0.19
CCDC28A-202ENST00000611852 CHCHD4Q8N4Q1 142 aa16.21■□□□□ 0.19
CCDC28A-202ENST00000611852 CERS2Q96G23 380 aa16.21■□□□□ 0.19
CCDC28A-202ENST00000611852 PHACTR1Q9C0D0 580 aa16.21■□□□□ 0.19
CCDC28A-202ENST00000611852 ABCG4Q9H172 646 aa16.21■□□□□ 0.19
CCDC28A-202ENST00000611852 SAYSD1Q9NPB0 183 aa16.21■□□□□ 0.19
CCDC28A-202ENST00000611852 FAM114A2Q9NRY5 505 aa16.21■□□□□ 0.19
CCDC28A-202ENST00000611852 IARS2Q9NSE4 1012 aaKnown RBP16.21■□□□□ 0.19
CCDC28A-202ENST00000611852 INTS10Q9NVR2 710 aaKnown RBP16.21■□□□□ 0.19
CCDC28A-202ENST00000611852 CPNE7Q9UBL6 633 aa16.21■□□□□ 0.19
CCDC28A-202ENST00000611852 WASF3Q9UPY6 502 aa16.21■□□□□ 0.19
CCDC28A-202ENST00000611852 VPS9D1Q9Y2B5 631 aa16.21■□□□□ 0.19
CCDC28A-202ENST00000611852 CRYL1Q9Y2S2 319 aa16.21■□□□□ 0.19
CCDC28A-202ENST00000611852 NCOR2Q9Y618 2525 aa16.21■□□□□ 0.19
CCDC28A-202ENST00000611852 MED19A0JLT2 244 aaPredicted RBP16.2■□□□□ 0.18
CCDC28A-202ENST00000611852 IQCF5A8MTL0 148 aa16.2■□□□□ 0.18
CCDC28A-202ENST00000611852 TOP3BO95985 862 aaKnown RBP16.2■□□□□ 0.18
CCDC28A-202ENST00000611852 F7P08709 466 aaPredicted RBP16.2■□□□□ 0.18
CCDC28A-202ENST00000611852 SLC19A1P41440 591 aa16.2■□□□□ 0.18
CCDC28A-202ENST00000611852 HALP42357 657 aa16.2■□□□□ 0.18
CCDC28A-202ENST00000611852 EIF3BP55884 814 aaKnown RBP16.2■□□□□ 0.18
CCDC28A-202ENST00000611852 CLDN6P56747 220 aa16.2■□□□□ 0.18
CCDC28A-202ENST00000611852 FRG1Q14331 258 aaKnown RBP16.2■□□□□ 0.18
CCDC28A-202ENST00000611852 CTSL3PQ5NE16 218 aa16.2■□□□□ 0.18
CCDC28A-202ENST00000611852 PTRHD1Q6GMV3 140 aaKnown RBP16.2■□□□□ 0.18
CCDC28A-202ENST00000611852 TRMT10BQ6PF06 316 aaKnown RBP16.2■□□□□ 0.18
CCDC28A-202ENST00000611852 SPRED1Q7Z699 444 aa16.2■□□□□ 0.18
CCDC28A-202ENST00000611852 CNTN4Q8IWV2 1026 aa16.2■□□□□ 0.18
CCDC28A-202ENST00000611852 Q8N9G6 341 aaPredicted RBP16.2■□□□□ 0.18
CCDC28A-202ENST00000611852 AVL9Q8NBF6 648 aa16.2■□□□□ 0.18
CCDC28A-202ENST00000611852 LRRN4CLQ8ND94 238 aa16.2■□□□□ 0.18
CCDC28A-202ENST00000611852 SPDYE1Q8NFV5 336 aaPredicted RBP16.2■□□□□ 0.18
CCDC28A-202ENST00000611852 LKAAEAR1Q8TD35 194 aa16.2■□□□□ 0.18
CCDC28A-202ENST00000611852 PYROXD1Q8WU10 500 aa16.2■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms