RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 PNLIPP16233 465 aa13.92□□□□□ -0.18
SHKBP1-217ENST00000598558 PGAM1P18669 254 aa13.92□□□□□ -0.18
SHKBP1-217ENST00000598558 XRCC1P18887 633 aaPredicted RBP13.92□□□□□ -0.18
SHKBP1-217ENST00000598558 CD1CP29017 333 aa13.92□□□□□ -0.18
SHKBP1-217ENST00000598558 ALDH4A1P30038 563 aa13.92□□□□□ -0.18
SHKBP1-217ENST00000598558 CCR7P32248 378 aa13.92□□□□□ -0.18
SHKBP1-217ENST00000598558 FASLGP48023 281 aa13.92□□□□□ -0.18
SHKBP1-217ENST00000598558 PREPP48147 710 aa13.92□□□□□ -0.18
SHKBP1-217ENST00000598558 PDX1P52945 283 aa13.92□□□□□ -0.18
SHKBP1-217ENST00000598558 ARL4CP56559 192 aa13.92□□□□□ -0.18
SHKBP1-217ENST00000598558 SHC2P98077 582 aa13.92□□□□□ -0.18
SHKBP1-217ENST00000598558 TARDBPQ13148 414 aaKnown RBP eCLIP13.92□□□□□ -0.18
SHKBP1-217ENST00000598558 CTBP1Q13363 440 aa13.92□□□□□ -0.18
SHKBP1-217ENST00000598558 CAMK2BQ13554 666 aa13.92□□□□□ -0.18
SHKBP1-217ENST00000598558 TUBB2AQ13885 445 aa13.92□□□□□ -0.18
SHKBP1-217ENST00000598558 BRD3Q15059 726 aa13.92□□□□□ -0.18
SHKBP1-217ENST00000598558 HIF1AQ16665 826 aa13.92□□□□□ -0.18
SHKBP1-217ENST00000598558 DNAJC21Q5F1R6 531 aaKnown RBP13.92□□□□□ -0.18
SHKBP1-217ENST00000598558 CTSL3PQ5NE16 218 aa13.92□□□□□ -0.18
SHKBP1-217ENST00000598558 CAPRIN2Q6IMN6 1127 aaKnown RBP13.92□□□□□ -0.18
SHKBP1-217ENST00000598558 DUS1LQ6P1R4 473 aaKnown RBP13.92□□□□□ -0.18
SHKBP1-217ENST00000598558 TRMT10BQ6PF06 316 aaKnown RBP13.92□□□□□ -0.18
SHKBP1-217ENST00000598558 CCNI2Q6ZMN8 369 aaPredicted RBP13.92□□□□□ -0.18
SHKBP1-217ENST00000598558 UNC5AQ6ZN44 842 aa13.92□□□□□ -0.18
SHKBP1-217ENST00000598558 CILP2Q8IUL8 1156 aa13.92□□□□□ -0.18
SHKBP1-217ENST00000598558 CCNJLQ8IV13 435 aa13.92□□□□□ -0.18
SHKBP1-217ENST00000598558 PDIK1LQ8N165 341 aa13.92□□□□□ -0.18
SHKBP1-217ENST00000598558 HM13Q8TCT9 377 aa13.92□□□□□ -0.18
SHKBP1-217ENST00000598558 SEC14L1Q92503 715 aa13.92□□□□□ -0.18
SHKBP1-217ENST00000598558 LPGAT1Q92604 370 aa13.92□□□□□ -0.18
SHKBP1-217ENST00000598558 TBRG4Q969Z0 631 aaKnown RBP eCLIP13.92□□□□□ -0.18
SHKBP1-217ENST00000598558 RMDN2Q96LZ7 410 aa13.92□□□□□ -0.18
SHKBP1-217ENST00000598558 NRTNQ99748 197 aa13.92□□□□□ -0.18
SHKBP1-217ENST00000598558 TUBB2BQ9BVA1 445 aa13.92□□□□□ -0.18
SHKBP1-217ENST00000598558 CARD6Q9BX69 1037 aa13.92□□□□□ -0.18
SHKBP1-217ENST00000598558 OR52A5Q9H2C5 316 aa13.92□□□□□ -0.18
SHKBP1-217ENST00000598558 LRRN3Q9H3W5 708 aa13.92□□□□□ -0.18
SHKBP1-217ENST00000598558 COG4Q9H9E3 785 aa13.92□□□□□ -0.18
SHKBP1-217ENST00000598558 SARS2Q9NP81 518 aaKnown RBP13.92□□□□□ -0.18
SHKBP1-217ENST00000598558 C20orf96Q9NUD7 363 aaPredicted RBP13.92□□□□□ -0.18
SHKBP1-217ENST00000598558 SLC17A6Q9P2U8 582 aa13.92□□□□□ -0.18
SHKBP1-217ENST00000598558 IGHV1OR21-1A0A087WYE8 117 aa13.91□□□□□ -0.18
SHKBP1-217ENST00000598558 KIR2DS5A0A0G2JLQ3 304 aa13.91□□□□□ -0.18
SHKBP1-217ENST00000598558 A0A0G2JNG1 304 aa13.91□□□□□ -0.18
SHKBP1-217ENST00000598558 A0A1W2PNU3 283 aaPredicted RBP13.91□□□□□ -0.18
SHKBP1-217ENST00000598558 SLC5A10A0PJK1 596 aa13.91□□□□□ -0.18
SHKBP1-217ENST00000598558 RHPN2P1A8MT19 583 aa13.91□□□□□ -0.18
SHKBP1-217ENST00000598558 KIR2DS3K7RE56 304 aa13.91□□□□□ -0.18
SHKBP1-217ENST00000598558 SMAPO00193 183 aa13.91□□□□□ -0.18
SHKBP1-217ENST00000598558 PRMT5O14744 637 aaPredicted RBP13.91□□□□□ -0.18
SHKBP1-217ENST00000598558 NDUFS3O75489 264 aa13.91□□□□□ -0.18
SHKBP1-217ENST00000598558 VCLP18206 1134 aa13.91□□□□□ -0.18
SHKBP1-217ENST00000598558 GABRB3P28472 473 aa13.91□□□□□ -0.18
SHKBP1-217ENST00000598558 FMO4P31512 558 aa13.91□□□□□ -0.18
SHKBP1-217ENST00000598558 TTPAP49638 278 aa13.91□□□□□ -0.18
SHKBP1-217ENST00000598558 PLTPP55058 493 aa13.91□□□□□ -0.18
SHKBP1-217ENST00000598558 HHEXQ03014 270 aa13.91□□□□□ -0.18
SHKBP1-217ENST00000598558 PDIA2Q13087 525 aaKnown RBP13.91□□□□□ -0.18
SHKBP1-217ENST00000598558 KIR2DS5Q14953 304 aa13.91□□□□□ -0.18
SHKBP1-217ENST00000598558 LONRF1Q17RB8 773 aa13.91□□□□□ -0.18
SHKBP1-217ENST00000598558 HSP90AA5PQ58FG0 334 aa13.91□□□□□ -0.18
SHKBP1-217ENST00000598558 STEAP4Q687X5 459 aa13.91□□□□□ -0.18
SHKBP1-217ENST00000598558 ZNF549Q6P9A3 640 aa13.91□□□□□ -0.18
SHKBP1-217ENST00000598558 ZNF574Q6ZN55 896 aaPredicted RBP13.91□□□□□ -0.18
SHKBP1-217ENST00000598558 USP53Q70EK8 1073 aa13.91□□□□□ -0.18
SHKBP1-217ENST00000598558 B3GNT8Q7Z7M8 397 aa13.91□□□□□ -0.18
SHKBP1-217ENST00000598558 TMPRSS12Q86WS5 348 aa13.91□□□□□ -0.18
SHKBP1-217ENST00000598558 VRK3Q8IV63 474 aa13.91□□□□□ -0.18
SHKBP1-217ENST00000598558 DCBLD1Q8N8Z6 715 aa13.91□□□□□ -0.18
SHKBP1-217ENST00000598558 SERBP1Q8NC51 408 aaKnown RBP eCLIP13.91□□□□□ -0.18
SHKBP1-217ENST00000598558 FBXO36Q8NEA4 188 aa13.91□□□□□ -0.18
SHKBP1-217ENST00000598558 OR6C4Q8NGE1 309 aa13.91□□□□□ -0.18
SHKBP1-217ENST00000598558 FBXO25Q8TCJ0 367 aa13.91□□□□□ -0.18
SHKBP1-217ENST00000598558 JPH3Q8WXH2 748 aaPredicted RBP13.91□□□□□ -0.18
SHKBP1-217ENST00000598558 CFAP36Q96G28 342 aa13.91□□□□□ -0.18
SHKBP1-217ENST00000598558 TBC1D10AQ9BXI6 508 aa13.91□□□□□ -0.18
SHKBP1-217ENST00000598558 TMEM121BQ9BXQ6 578 aaPredicted RBP13.91□□□□□ -0.18
SHKBP1-217ENST00000598558 ABCG4Q9H172 646 aa13.91□□□□□ -0.18
SHKBP1-217ENST00000598558 FBXO6Q9NRD1 293 aaPredicted RBP13.91□□□□□ -0.18
SHKBP1-217ENST00000598558 IARS2Q9NSE4 1012 aaKnown RBP13.91□□□□□ -0.18
SHKBP1-217ENST00000598558 ZDHHC18Q9NUE0 388 aa13.91□□□□□ -0.18
SHKBP1-217ENST00000598558 EVA1BQ9NVM1 165 aa13.91□□□□□ -0.18
SHKBP1-217ENST00000598558 OGFRQ9NZT2 677 aa13.91□□□□□ -0.18
SHKBP1-217ENST00000598558 CDYLQ9Y232 598 aa13.91□□□□□ -0.18
SHKBP1-217ENST00000598558 CRYL1Q9Y2S2 319 aa13.91□□□□□ -0.18
SHKBP1-217ENST00000598558 UTP11Q9Y3A2 253 aaKnown RBP13.91□□□□□ -0.18
SHKBP1-217ENST00000598558 PCDHB1Q9Y5F3 818 aa13.91□□□□□ -0.18
SHKBP1-217ENST00000598558 PMS2P1A4D2B8 440 aa13.9□□□□□ -0.18
SHKBP1-217ENST00000598558 CTAGE15A4D2H0 777 aa13.9□□□□□ -0.18
SHKBP1-217ENST00000598558 OR5K4A6NMS3 321 aa13.9□□□□□ -0.18
SHKBP1-217ENST00000598558 HAUS5O94927 633 aa13.9□□□□□ -0.18
SHKBP1-217ENST00000598558 OR56A5P0C7T3 313 aa13.9□□□□□ -0.18
SHKBP1-217ENST00000598558 CTAGE8P0CG41 777 aa13.9□□□□□ -0.18
SHKBP1-217ENST00000598558 CDK4P11802 303 aa13.9□□□□□ -0.18
SHKBP1-217ENST00000598558 HOXB3P14651 431 aaPredicted RBP13.9□□□□□ -0.18
SHKBP1-217ENST00000598558 JUPP14923 745 aa13.9□□□□□ -0.18
SHKBP1-217ENST00000598558 PAMP19021 973 aa13.9□□□□□ -0.18
SHKBP1-217ENST00000598558 OGNP20774 298 aaKnown RBP13.9□□□□□ -0.18
SHKBP1-217ENST00000598558 RPS3P23396 243 aaKnown RBP eCLIP13.9□□□□□ -0.18
SHKBP1-217ENST00000598558 SLC1A2P43004 574 aa13.9□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms